Wall clock time and date at job start Tue Mar 31 2020 19:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.21763 * 2 1 4 4 C 1.52999 * 109.47365 * 64.29939 * 3 2 1 5 5 C 1.50703 * 109.47152 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00044 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99893 * 180.02562 * 5 4 3 8 8 C 1.47291 * 136.54312 * 359.97438 * 7 5 4 9 9 C 1.54079 * 87.60181 * 151.38941 * 8 7 5 10 10 H 1.09005 * 115.04094 * 141.63053 * 9 8 7 11 11 C 1.53066 * 111.39610 * 273.97102 * 9 8 7 12 12 C 1.52703 * 109.28026 * 142.29131 * 11 9 8 13 13 N 1.46531 * 108.49134 * 301.79659 * 12 11 9 14 14 C 1.36944 * 119.73747 * 236.40134 * 13 12 11 15 15 H 1.08001 * 119.99531 * 25.04320 * 14 13 12 16 16 C 1.38812 * 119.99948 * 205.31114 * 14 13 12 17 17 N 1.31615 * 119.99973 * 13.89340 * 16 14 13 18 18 Si 1.86798 * 119.99710 * 193.88868 * 16 14 13 19 19 H 1.48495 * 109.47274 * 60.00536 * 18 16 14 20 20 H 1.48507 * 109.46858 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47214 * 300.00160 * 18 16 14 22 22 C 1.45697 * 120.52780 * 56.12392 * 13 12 11 23 23 C 1.46465 * 136.54212 * 179.97438 * 7 5 4 24 24 H 1.08998 * 111.43859 * 97.09441 * 23 7 5 25 25 C 1.54474 * 110.24734 * 238.06644 * 2 1 3 26 26 C 1.54764 * 101.70727 * 266.27922 * 25 2 1 27 27 C 1.51287 * 104.22963 * 335.30187 * 26 25 2 28 28 O 1.21283 * 124.93922 * 196.16873 * 27 26 25 29 29 N 1.34413 * 110.11644 * 16.19169 * 27 26 25 30 30 H 1.08998 * 109.46793 * 60.00052 * 1 2 3 31 31 H 1.08991 * 109.47493 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47289 * 300.00633 * 1 2 3 33 33 H 1.09002 * 109.47399 * 304.29323 * 3 2 1 34 34 H 1.09003 * 109.47346 * 184.30017 * 3 2 1 35 35 H 1.08991 * 109.47312 * 59.99866 * 4 3 2 36 36 H 1.08998 * 109.46776 * 299.99590 * 4 3 2 37 37 H 1.08995 * 113.52654 * 266.07477 * 8 7 5 38 38 H 1.09000 * 113.52415 * 36.70665 * 8 7 5 39 39 H 1.08997 * 109.51424 * 262.32820 * 11 9 8 40 40 H 1.08997 * 109.51035 * 22.43362 * 11 9 8 41 41 H 1.09003 * 109.61869 * 182.01275 * 12 11 9 42 42 H 1.08998 * 109.55749 * 61.54587 * 12 11 9 43 43 H 0.96999 * 120.00291 * 179.97438 * 17 16 14 44 44 H 1.09001 * 108.78805 * 81.15984 * 22 13 12 45 45 H 1.08999 * 108.79225 * 199.49101 * 22 13 12 46 46 H 1.09002 * 110.97168 * 24.45247 * 25 2 1 47 47 H 1.09004 * 110.97176 * 148.21168 * 25 2 1 48 48 H 1.09001 * 110.51863 * 216.59215 * 26 25 2 49 49 H 1.08997 * 110.53207 * 94.02264 * 26 25 2 50 50 H 0.97003 * 124.34925 * 180.38901 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 6 1.6480 2.1305 1.2998 5 6 2.1683 3.5449 1.2994 6 8 2.8053 3.9564 0.3531 7 7 1.9265 4.3521 2.3514 8 6 1.2256 4.2450 3.6424 9 6 2.2060 5.3006 4.1887 10 1 1.7672 6.0283 4.8714 11 6 3.4969 4.6538 4.6967 12 6 4.6819 5.5517 4.3483 13 7 4.7106 5.7404 2.8955 14 6 5.8363 5.4088 2.1896 15 1 6.5191 4.6681 2.5790 16 6 6.1024 6.0286 0.9764 17 7 5.4406 7.1129 0.6322 18 14 7.4001 5.3238 -0.1675 19 1 7.0252 3.9381 -0.5474 20 1 7.4929 6.1642 -1.3884 21 1 8.7142 5.3092 0.5238 22 6 3.5490 6.2725 2.1952 23 6 2.2422 5.7321 2.7271 24 1 1.4154 6.4055 2.5013 25 6 2.0646 -0.7666 -1.2300 26 6 2.2655 -2.1878 -0.6512 27 6 2.4525 -1.9620 0.8330 28 8 2.9095 -2.7759 1.6073 29 7 2.0378 -0.7282 1.1687 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6410 1.9768 -0.8490 34 1 3.1460 1.4225 -0.0771 35 1 2.0658 1.5895 2.1487 36 1 0.5608 2.1438 1.3767 37 1 0.1919 4.5886 3.6060 38 1 1.3303 3.2682 4.1145 39 1 3.4399 4.5275 5.7779 40 1 3.6276 3.6809 4.2229 41 1 5.6079 5.0793 4.6761 42 1 4.5661 6.5165 4.8421 43 1 5.6268 7.5463 -0.2154 44 1 3.5463 7.3580 2.2940 45 1 3.6286 6.0169 1.1386 46 1 1.3303 -0.7722 -2.0355 47 1 3.0113 -0.3468 -1.5701 48 1 3.1525 -2.6534 -1.0809 49 1 1.3853 -2.8036 -0.8355 50 1 2.0698 -0.3659 2.0679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222146360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:58 Heat of formation + Delta-G solvation = -35.706396 kcal Electronic energy + Delta-G solvation = -30806.465504 eV Core-core repulsion = 26834.296519 eV Total energy + Delta-G solvation = -3972.168985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96523 -41.57486 -39.38475 -38.20866 -37.04829 -34.10779 -33.95628 -32.33305 -31.92726 -31.11084 -29.74534 -28.58937 -26.82011 -25.66377 -24.85252 -23.73164 -22.61466 -21.85297 -21.33373 -20.60935 -19.46034 -18.61832 -17.93656 -17.43647 -17.28666 -17.06431 -16.77055 -16.36144 -16.10888 -15.73295 -15.43700 -15.14574 -14.90020 -14.81749 -14.59269 -14.37837 -14.24131 -14.01739 -13.67443 -13.48358 -13.44634 -13.21642 -13.14798 -13.07563 -12.78504 -12.67806 -12.55347 -12.34385 -12.23596 -12.03380 -11.98823 -11.82185 -11.72895 -11.56951 -11.49118 -11.06949 -10.95965 -10.66853 -10.29437 -10.16109 -9.46445 -8.67690 -7.86336 -5.30103 1.33559 1.40149 1.43874 1.55534 1.86046 2.03687 2.38136 2.46768 3.29054 3.31045 3.40413 3.46684 3.61251 3.72324 3.80554 3.95415 3.97735 4.12306 4.16308 4.27318 4.28402 4.46383 4.48017 4.53345 4.57276 4.65509 4.70132 4.74863 4.76843 4.87092 4.90829 4.93861 4.94908 4.97853 5.05519 5.10412 5.11308 5.15083 5.20645 5.32274 5.41896 5.43290 5.54505 5.70611 5.83296 5.85874 6.03376 6.38956 7.05825 7.18936 7.22157 7.41929 7.95952 8.33794 9.17785 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003951 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.032674 B = 7084.317732 C = 8268.100936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 C -0.101 4.101 4 C -0.118 4.118 5 C 0.521 3.479 6 O -0.585 6.585 7 N -0.642 5.642 8 C 0.112 3.888 9 C -0.107 4.107 10 H 0.127 0.873 11 C -0.103 4.103 12 C 0.138 3.862 13 N -0.601 5.601 14 C -0.259 4.259 15 H 0.056 0.944 16 C -0.041 4.041 17 N -0.931 5.931 18 Si 0.954 3.046 19 H -0.292 1.292 20 H -0.291 1.291 21 H -0.270 1.270 22 C 0.182 3.818 23 C 0.102 3.898 24 H 0.088 0.912 25 C -0.122 4.122 26 C -0.148 4.148 27 C 0.509 3.491 28 O -0.593 6.593 29 N -0.716 5.716 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.025 0.975 43 H 0.244 0.756 44 H -0.010 1.010 45 H 0.052 0.948 46 H 0.123 0.877 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.129 0.871 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 -13.621 2.998 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.075 3.925 3 C -0.139 4.139 4 C -0.157 4.157 5 C 0.312 3.688 6 O -0.465 6.465 7 N -0.377 5.377 8 C -0.009 4.009 9 C -0.125 4.125 10 H 0.145 0.855 11 C -0.142 4.142 12 C 0.013 3.987 13 N -0.325 5.325 14 C -0.389 4.389 15 H 0.074 0.926 16 C -0.237 4.237 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.219 1.219 20 H -0.217 1.217 21 H -0.195 1.195 22 C 0.056 3.944 23 C -0.003 4.003 24 H 0.106 0.894 25 C -0.160 4.160 26 C -0.187 4.187 27 C 0.297 3.703 28 O -0.475 6.475 29 N -0.370 5.370 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.008 0.992 45 H 0.070 0.930 46 H 0.141 0.859 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.147 0.853 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -17.692 -13.907 2.452 22.637 hybrid contribution 1.427 0.568 -0.594 1.646 sum -16.266 -13.339 1.859 21.118 Atomic orbital electron populations 1.22215 0.91211 1.03559 1.04147 1.21182 0.95747 0.90252 0.85298 1.21604 1.00562 0.94101 0.97664 1.21612 1.03984 0.89857 1.00291 1.20963 0.79368 0.88412 0.80008 1.90768 1.42077 1.77420 1.36245 1.49706 1.54501 1.14163 1.19324 1.23489 0.97076 1.00573 0.79750 1.22808 0.96523 0.99029 0.94179 0.85483 1.21615 0.93706 0.97775 1.01088 1.20872 0.97280 0.96924 0.83589 1.43674 1.10968 1.75704 1.02141 1.19320 1.01054 1.15575 1.02986 0.92615 1.25575 1.00727 0.96216 1.01144 1.70164 1.45462 1.19562 1.22592 0.85537 0.79835 0.77309 0.78974 1.21928 1.21720 1.19522 1.19771 0.84614 0.93025 0.96995 1.22631 0.97601 0.85097 0.94995 0.89413 1.22815 1.03461 0.92725 0.96966 1.22407 1.06331 0.99543 0.90465 1.21546 0.75036 0.81352 0.92368 1.90721 1.48007 1.49505 1.59224 1.46579 1.63144 1.15340 1.11934 0.89453 0.91014 0.91150 0.89772 0.93892 0.88760 0.85559 0.86661 0.88468 0.88361 0.93912 0.93434 0.95751 0.94655 0.99215 0.92988 0.85869 0.90781 0.87797 0.85301 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.53 71.98 0.61 -0.86 16 2 C 0.16 2.48 0.87 4.05 0.00 2.48 16 3 C -0.10 -2.30 3.72 30.59 0.11 -2.19 16 4 C -0.12 -2.65 5.10 29.85 0.15 -2.50 16 5 C 0.52 18.85 8.01 87.66 0.70 19.55 16 6 O -0.59 -29.03 15.22 -3.02 -0.05 -29.08 16 7 N -0.64 -20.72 3.33 -866.14 -2.89 -23.60 16 8 C 0.11 2.18 7.77 81.10 0.63 2.81 16 9 C -0.11 -2.71 4.57 -10.59 -0.05 -2.75 16 10 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 11 C -0.10 -3.04 5.68 30.52 0.17 -2.86 16 12 C 0.14 5.65 6.43 86.27 0.56 6.20 16 13 N -0.60 -31.65 3.03 -708.14 -2.15 -33.80 16 14 C -0.26 -15.47 9.53 84.03 0.80 -14.67 16 15 H 0.06 3.30 7.83 -2.91 -0.02 3.27 16 16 C -0.04 -2.53 4.96 84.86 0.42 -2.11 16 17 N -0.93 -59.79 10.93 21.65 0.24 -59.56 16 18 Si 0.95 50.20 29.58 68.60 2.03 52.23 16 19 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 20 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 21 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 22 C 0.18 9.38 4.59 85.91 0.39 9.78 16 23 C 0.10 3.68 4.03 38.69 0.16 3.84 16 24 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 25 C -0.12 -1.61 6.22 31.70 0.20 -1.42 16 26 C -0.15 -2.15 6.86 30.64 0.21 -1.94 16 27 C 0.51 11.88 8.43 87.90 0.74 12.62 16 28 O -0.59 -19.62 18.03 -3.04 -0.05 -19.68 16 29 N -0.72 -13.67 5.35 -419.99 -2.25 -15.92 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.61 6.62 -2.38 -0.02 0.60 16 33 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.04 1.31 8.02 -2.39 -0.02 1.29 16 35 H 0.09 1.91 6.70 -2.39 -0.02 1.89 16 36 H 0.13 1.89 6.61 -2.39 -0.02 1.87 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.45 8.04 -2.39 -0.02 1.43 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.04 1.41 7.68 -2.39 -0.02 1.40 16 41 H 0.05 1.96 7.87 -2.39 -0.02 1.94 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 44 H -0.01 -0.56 7.99 -2.39 -0.02 -0.58 16 45 H 0.05 3.22 4.96 -2.39 -0.01 3.20 16 46 H 0.12 0.91 7.89 -2.39 -0.02 0.89 16 47 H 0.07 1.22 7.86 -2.39 -0.02 1.20 16 48 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.41 7.53 7.45 -92.71 -0.69 6.84 16 Total: -1.00 -90.93 387.30 0.95 -89.98 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.25 Total: 13.44 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 5.82 Total: 25.98 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -7.05 Total: -132.87 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.10 Total: -48.76 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.23 kcal Total: -90.93 0.95 -89.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222146360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.276 kcal (2) G-P(sol) polarization free energy of solvation -90.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds