Wall clock time and date at job start Tue Mar 31 2020 18:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36766 * 125.80386 * 2 1 4 4 C 1.47266 * 126.93856 * 359.94589 * 3 2 1 5 5 O 1.21629 * 120.00381 * 37.40514 * 4 3 2 6 6 N 1.34773 * 119.99914 * 217.39927 * 4 3 2 7 7 C 1.46931 * 120.63222 * 4.73228 * 6 4 3 8 8 C 1.53620 * 108.54781 * 126.36151 * 7 6 4 9 9 C 1.53041 * 109.23962 * 54.85624 * 8 7 6 10 10 C 1.53037 * 109.53918 * 298.51039 * 9 8 7 11 11 H 1.08996 * 109.52496 * 301.39972 * 10 9 8 12 12 N 1.46501 * 109.49926 * 181.31367 * 10 9 8 13 13 C 1.36938 * 120.00283 * 300.16886 * 12 10 9 14 14 H 1.08003 * 119.99347 * 317.38086 * 13 12 10 15 15 C 1.38807 * 120.00139 * 137.38766 * 13 12 10 16 16 N 1.31617 * 120.00072 * 349.00686 * 15 13 12 17 17 Si 1.86801 * 119.99857 * 169.00692 * 15 13 12 18 18 H 1.48502 * 109.47002 * 89.99866 * 17 15 13 19 19 H 1.48503 * 109.47311 * 209.99873 * 17 15 13 20 20 H 1.48502 * 109.47303 * 330.00097 * 17 15 13 21 21 C 1.46500 * 119.99868 * 120.15875 * 12 10 9 22 22 C 1.52999 * 109.46985 * 85.54068 * 21 12 10 23 23 O 1.42902 * 109.47187 * 64.99803 * 22 21 12 24 24 C 1.46926 * 120.63428 * 185.00439 * 6 4 3 25 25 C 1.46686 * 106.12033 * 179.97438 * 3 2 1 26 26 C 1.34491 * 106.32817 * 0.02562 * 25 3 2 27 27 N 1.34664 * 125.80288 * 180.22942 * 2 1 3 28 28 C 1.46502 * 124.85039 * 0.02760 * 27 2 1 29 29 H 1.09005 * 109.47112 * 90.00048 * 1 2 3 30 30 H 1.09006 * 109.47144 * 210.00068 * 1 2 3 31 31 H 1.08998 * 109.47150 * 329.99820 * 1 2 3 32 32 H 1.08998 * 109.58183 * 246.20090 * 7 6 4 33 33 H 1.09003 * 109.58389 * 6.61848 * 7 6 4 34 34 H 1.08995 * 109.63360 * 294.86455 * 8 7 6 35 35 H 1.08999 * 109.45723 * 174.73953 * 8 7 6 36 36 H 1.08999 * 109.45937 * 178.48738 * 9 8 7 37 37 H 1.09003 * 109.44827 * 58.52690 * 9 8 7 38 38 H 0.97006 * 119.99509 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47326 * 205.53747 * 21 12 10 40 40 H 1.08997 * 109.47091 * 325.54400 * 21 12 10 41 41 H 1.09001 * 109.47483 * 184.99812 * 22 21 12 42 42 H 1.09003 * 109.47358 * 305.00186 * 22 21 12 43 43 H 0.96702 * 114.00288 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.58249 * 353.37746 * 24 6 4 45 45 H 1.09000 * 109.58997 * 113.65487 * 24 6 4 46 46 H 1.07997 * 126.83438 * 179.97438 * 25 3 2 47 47 H 1.08000 * 125.56683 * 179.97438 * 26 25 3 48 48 H 1.08994 * 109.47260 * 270.20668 * 28 27 2 49 49 H 1.09002 * 109.46754 * 30.21030 * 28 27 2 50 50 H 1.09003 * 109.46694 * 150.20602 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0011 5 8 0.8902 2.8485 0.6378 6 7 2.5563 3.4338 -0.7100 7 6 3.6789 3.0312 -1.5682 8 6 3.4337 3.5786 -2.9824 9 6 3.2120 5.0910 -2.9064 10 6 1.9746 5.3848 -2.0553 11 1 1.1062 4.8924 -2.4929 12 7 1.7450 6.8309 -2.0090 13 6 2.7064 7.6608 -1.4968 14 1 3.2330 7.3851 -0.5950 15 6 3.0039 8.8562 -2.1365 16 7 2.5274 9.0950 -3.3398 17 14 4.0808 10.1260 -1.2894 18 1 5.5039 9.8758 -1.6319 19 1 3.6939 11.4857 -1.7440 20 1 3.9007 10.0258 0.1813 21 6 0.4870 7.3894 -2.5108 22 6 -0.5677 7.3464 -1.4033 23 8 -0.1714 8.2079 -0.3343 24 6 2.1997 4.8571 -0.6348 25 6 3.6882 0.6151 0.0006 26 6 3.6095 -0.7275 0.0004 27 7 2.2947 -1.0922 -0.0044 28 6 1.8094 -2.4744 -0.0105 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 4.6076 3.4406 -1.1708 33 1 3.7415 1.9435 -1.6016 34 1 2.5519 3.1028 -3.4115 35 1 4.3011 3.3690 -3.6084 36 1 3.0643 5.4873 -3.9110 37 1 4.0842 5.5633 -2.4544 38 1 2.7357 9.9303 -3.7870 39 1 0.6461 8.4221 -2.8211 40 1 0.1434 6.8027 -3.3627 41 1 -1.5264 7.6788 -1.8014 42 1 -0.6628 6.3261 -1.0314 43 1 -0.7950 8.2307 0.4044 44 1 1.2860 4.9746 -0.0522 45 1 3.0092 5.4121 -0.1606 46 1 4.5889 1.2109 0.0004 47 1 4.4497 -1.4060 0.0003 48 1 1.6851 -2.8204 1.0156 49 1 0.8513 -2.5208 -0.5282 50 1 2.5308 -3.1105 -0.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264634337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:55 Heat of formation + Delta-G solvation = -6.373651 kcal Electronic energy + Delta-G solvation = -30602.340884 eV Core-core repulsion = 26631.443863 eV Total energy + Delta-G solvation = -3970.897022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45251 -39.28264 -37.17841 -35.99434 -34.48285 -33.03766 -31.87776 -31.67426 -31.12950 -29.55026 -27.45899 -26.65072 -26.45474 -24.64775 -23.99246 -22.07092 -21.78658 -20.54923 -19.95572 -19.31604 -18.09076 -17.06432 -16.45413 -16.32551 -16.03453 -15.58971 -15.33609 -14.72815 -14.46408 -14.23621 -14.06442 -13.69282 -13.55369 -13.33871 -13.29683 -13.11268 -12.77463 -12.73764 -12.70844 -12.48919 -12.32918 -12.20936 -12.10622 -11.78770 -11.60176 -11.17817 -10.84108 -10.80271 -10.66995 -10.58406 -10.24330 -10.01240 -9.80723 -9.72942 -9.43086 -9.40335 -8.94886 -8.56731 -8.38826 -8.21784 -7.97640 -6.33185 -5.61397 -3.26872 1.90312 2.41084 2.67773 3.46190 3.48459 3.53269 3.58899 3.72990 4.45037 4.61856 4.64761 4.79229 4.81975 5.02757 5.12673 5.15397 5.24835 5.38403 5.46278 5.49110 5.54221 5.56085 5.65236 5.69370 5.85235 5.89870 5.94239 6.02970 6.11113 6.17390 6.20228 6.28651 6.37942 6.47257 6.52895 6.67887 6.73685 6.75968 6.83863 6.94540 6.98294 7.08423 7.14933 7.23439 7.34684 7.81176 7.97550 7.99822 8.59519 8.71362 8.77686 9.35422 9.95118 10.54027 11.39705 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.003212 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.657263 B = 8715.838389 C = 9393.987353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.089 3.911 3 C -0.220 4.220 4 C 0.588 3.412 5 O -0.557 6.557 6 N -0.598 5.598 7 C 0.103 3.897 8 C -0.132 4.132 9 C -0.120 4.120 10 C 0.169 3.831 11 H 0.046 0.954 12 N -0.569 5.569 13 C -0.233 4.233 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.146 3.854 22 C 0.057 3.943 23 O -0.544 6.544 24 C 0.105 3.895 25 C -0.166 4.166 26 C -0.022 4.022 27 N -0.449 5.449 28 C 0.070 3.930 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.034 0.966 41 H 0.018 0.982 42 H 0.023 0.977 43 H 0.349 0.651 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -22.451 2.975 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 C -0.230 4.230 4 C 0.377 3.623 5 O -0.437 6.437 6 N -0.330 5.330 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.159 4.159 10 C 0.060 3.940 11 H 0.065 0.935 12 N -0.288 5.288 13 C -0.363 4.363 14 H 0.072 0.928 15 C -0.181 4.181 16 N -0.542 5.542 17 Si 0.729 3.271 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.020 3.980 22 C -0.023 4.023 23 O -0.345 6.345 24 C -0.019 4.019 25 C -0.190 4.190 26 C -0.148 4.148 27 N -0.126 5.126 28 C -0.072 4.072 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.041 0.959 43 H 0.192 0.808 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.165 0.835 47 H 0.182 0.818 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.974 -22.333 2.769 22.525 hybrid contribution 0.245 0.508 0.708 0.906 sum -0.729 -21.825 3.477 22.112 Atomic orbital electron populations 1.20529 0.87511 1.04329 1.02985 1.20189 0.93525 0.85142 1.03801 1.20193 0.93314 0.92232 1.17289 1.17410 0.82178 0.84000 0.78698 1.90711 1.27166 1.81169 1.44643 1.48035 1.32701 1.07995 1.44287 1.22069 0.88876 1.00612 0.90453 1.22038 1.01146 0.98293 0.95657 1.21899 1.00622 0.92201 1.01213 1.20613 0.95055 0.86470 0.91833 0.93529 1.43584 1.14064 0.99295 1.71905 1.18768 1.13646 1.00255 1.03659 0.92838 1.25236 0.98231 0.99926 0.94731 1.69854 1.47320 1.24692 1.12308 0.86370 0.80061 0.81140 0.79548 1.21630 1.21800 1.20354 1.21042 0.83739 1.02878 0.90375 1.23119 0.97342 0.91375 0.90467 1.86829 1.49859 1.67696 1.30157 1.22278 1.01668 0.77478 1.00441 1.22065 0.95835 0.93276 1.07838 1.21651 0.85321 0.96183 1.11602 1.43476 1.05982 1.05901 1.57201 1.22043 1.01585 0.80303 1.03281 0.90891 0.91839 0.88147 0.91910 0.89136 0.92493 0.91729 0.92062 0.91372 0.93841 0.87632 0.94769 0.96386 0.95878 0.80796 0.90011 0.91299 0.83513 0.81753 0.90920 0.89808 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.59 36.00 0.35 -0.70 16 2 C 0.09 1.12 6.88 -81.88 -0.56 0.55 16 3 C -0.22 -3.27 5.41 -103.35 -0.56 -3.83 16 4 C 0.59 10.69 7.48 -12.59 -0.09 10.59 16 5 O -0.56 -11.79 14.94 5.25 0.08 -11.71 16 6 N -0.60 -10.60 2.97 -173.82 -0.52 -11.12 16 7 C 0.10 1.51 5.52 -3.49 -0.02 1.49 16 8 C -0.13 -2.03 6.10 -26.39 -0.16 -2.19 16 9 C -0.12 -2.36 5.11 -26.69 -0.14 -2.50 16 10 C 0.17 3.60 2.79 -67.81 -0.19 3.41 16 11 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 12 N -0.57 -14.08 2.30 -165.53 -0.38 -14.46 16 13 C -0.23 -6.34 7.93 -15.06 -0.12 -6.46 16 14 H 0.05 1.49 6.76 -52.48 -0.36 1.13 16 15 C 0.02 0.49 5.12 -17.43 -0.09 0.41 16 16 N -0.90 -25.94 11.27 55.49 0.63 -25.32 16 17 Si 0.90 22.40 29.57 -169.99 -5.03 17.38 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.15 3.53 5.56 -4.04 -0.02 3.50 16 22 C 0.06 1.21 7.39 37.16 0.27 1.49 16 23 O -0.54 -12.11 13.35 -35.23 -0.47 -12.58 16 24 C 0.10 2.16 5.77 -3.71 -0.02 2.14 16 25 C -0.17 -1.98 8.64 -37.50 -0.32 -2.31 16 26 C -0.02 -0.21 11.34 -16.83 -0.19 -0.40 16 27 N -0.45 -4.35 3.09 -119.88 -0.37 -4.72 16 28 C 0.07 0.36 10.61 59.85 0.63 1.00 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 31 H 0.10 1.36 6.60 -51.93 -0.34 1.01 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.17 4.54 -51.93 -0.24 0.93 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.45 7.70 -51.93 -0.40 1.05 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.11 2.92 5.57 -51.93 -0.29 2.63 16 40 H 0.03 0.78 8.02 -51.93 -0.42 0.36 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.35 5.85 9.12 45.56 0.42 6.27 16 44 H 0.08 1.86 6.99 -51.93 -0.36 1.49 16 45 H 0.07 1.51 6.84 -51.93 -0.36 1.16 16 46 H 0.15 1.58 7.26 -52.49 -0.38 1.20 16 47 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.36 7.50 -51.93 -0.39 -0.03 16 50 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -34.44 392.02 -8.66 -43.11 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.28 Total: 7.31 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.24 Total: 6.20 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.64 Total: -55.61 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.39 Total: -24.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.44 -8.66 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264634337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.733 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds