Wall clock time and date at job start Tue Mar 31 2020 18:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36766 * 125.80386 * 2 1 4 4 C 1.47266 * 126.93856 * 359.94589 * 3 2 1 5 5 O 1.21629 * 120.00381 * 37.40514 * 4 3 2 6 6 N 1.34773 * 119.99914 * 217.39927 * 4 3 2 7 7 C 1.46931 * 120.63222 * 4.73228 * 6 4 3 8 8 C 1.53620 * 108.54781 * 126.36151 * 7 6 4 9 9 C 1.53041 * 109.23962 * 54.85624 * 8 7 6 10 10 C 1.53037 * 109.53918 * 298.51039 * 9 8 7 11 11 H 1.08996 * 109.52496 * 301.39972 * 10 9 8 12 12 N 1.46501 * 109.49926 * 181.31367 * 10 9 8 13 13 C 1.36938 * 120.00283 * 300.16886 * 12 10 9 14 14 H 1.08003 * 119.99347 * 317.38086 * 13 12 10 15 15 C 1.38807 * 120.00139 * 137.38766 * 13 12 10 16 16 N 1.31617 * 120.00072 * 349.00686 * 15 13 12 17 17 Si 1.86801 * 119.99857 * 169.00692 * 15 13 12 18 18 H 1.48502 * 109.47002 * 89.99866 * 17 15 13 19 19 H 1.48503 * 109.47311 * 209.99873 * 17 15 13 20 20 H 1.48502 * 109.47303 * 330.00097 * 17 15 13 21 21 C 1.46500 * 119.99868 * 120.15875 * 12 10 9 22 22 C 1.52999 * 109.46985 * 85.54068 * 21 12 10 23 23 O 1.42902 * 109.47187 * 64.99803 * 22 21 12 24 24 C 1.46926 * 120.63428 * 185.00439 * 6 4 3 25 25 C 1.46686 * 106.12033 * 179.97438 * 3 2 1 26 26 C 1.34491 * 106.32817 * 0.02562 * 25 3 2 27 27 N 1.34664 * 125.80288 * 180.22942 * 2 1 3 28 28 C 1.46502 * 124.85039 * 0.02760 * 27 2 1 29 29 H 1.09005 * 109.47112 * 90.00048 * 1 2 3 30 30 H 1.09006 * 109.47144 * 210.00068 * 1 2 3 31 31 H 1.08998 * 109.47150 * 329.99820 * 1 2 3 32 32 H 1.08998 * 109.58183 * 246.20090 * 7 6 4 33 33 H 1.09003 * 109.58389 * 6.61848 * 7 6 4 34 34 H 1.08995 * 109.63360 * 294.86455 * 8 7 6 35 35 H 1.08999 * 109.45723 * 174.73953 * 8 7 6 36 36 H 1.08999 * 109.45937 * 178.48738 * 9 8 7 37 37 H 1.09003 * 109.44827 * 58.52690 * 9 8 7 38 38 H 0.97006 * 119.99509 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47326 * 205.53747 * 21 12 10 40 40 H 1.08997 * 109.47091 * 325.54400 * 21 12 10 41 41 H 1.09001 * 109.47483 * 184.99812 * 22 21 12 42 42 H 1.09003 * 109.47358 * 305.00186 * 22 21 12 43 43 H 0.96702 * 114.00288 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.58249 * 353.37746 * 24 6 4 45 45 H 1.09000 * 109.58997 * 113.65487 * 24 6 4 46 46 H 1.07997 * 126.83438 * 179.97438 * 25 3 2 47 47 H 1.08000 * 125.56683 * 179.97438 * 26 25 3 48 48 H 1.08994 * 109.47260 * 270.20668 * 28 27 2 49 49 H 1.09002 * 109.46754 * 30.21030 * 28 27 2 50 50 H 1.09003 * 109.46694 * 150.20602 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0011 5 8 0.8902 2.8485 0.6378 6 7 2.5563 3.4338 -0.7100 7 6 3.6789 3.0312 -1.5682 8 6 3.4337 3.5786 -2.9824 9 6 3.2120 5.0910 -2.9064 10 6 1.9746 5.3848 -2.0553 11 1 1.1062 4.8924 -2.4929 12 7 1.7450 6.8309 -2.0090 13 6 2.7064 7.6608 -1.4968 14 1 3.2330 7.3851 -0.5950 15 6 3.0039 8.8562 -2.1365 16 7 2.5274 9.0950 -3.3398 17 14 4.0808 10.1260 -1.2894 18 1 5.5039 9.8758 -1.6319 19 1 3.6939 11.4857 -1.7440 20 1 3.9007 10.0258 0.1813 21 6 0.4870 7.3894 -2.5108 22 6 -0.5677 7.3464 -1.4033 23 8 -0.1714 8.2079 -0.3343 24 6 2.1997 4.8571 -0.6348 25 6 3.6882 0.6151 0.0006 26 6 3.6095 -0.7275 0.0004 27 7 2.2947 -1.0922 -0.0044 28 6 1.8094 -2.4744 -0.0105 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 4.6076 3.4406 -1.1708 33 1 3.7415 1.9435 -1.6016 34 1 2.5519 3.1028 -3.4115 35 1 4.3011 3.3690 -3.6084 36 1 3.0643 5.4873 -3.9110 37 1 4.0842 5.5633 -2.4544 38 1 2.7357 9.9303 -3.7870 39 1 0.6461 8.4221 -2.8211 40 1 0.1434 6.8027 -3.3627 41 1 -1.5264 7.6788 -1.8014 42 1 -0.6628 6.3261 -1.0314 43 1 -0.7950 8.2307 0.4044 44 1 1.2860 4.9746 -0.0522 45 1 3.0092 5.4121 -0.1606 46 1 4.5889 1.2109 0.0004 47 1 4.4497 -1.4060 0.0003 48 1 1.6851 -2.8204 1.0156 49 1 0.8513 -2.5208 -0.5282 50 1 2.5308 -3.1105 -0.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264634337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:54 Heat of formation + Delta-G solvation = -29.721099 kcal Electronic energy + Delta-G solvation = -30603.353306 eV Core-core repulsion = 26631.443863 eV Total energy + Delta-G solvation = -3971.909443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.32376 -40.68477 -38.83517 -37.65758 -36.24062 -34.08061 -33.34535 -32.88537 -32.53369 -31.20604 -29.15856 -27.82596 -27.18946 -25.97994 -25.86819 -23.63163 -22.97793 -22.08701 -21.32763 -20.68790 -19.17159 -18.35919 -18.22136 -17.98519 -17.21990 -16.84509 -16.41122 -16.37244 -16.06317 -15.88921 -15.41290 -15.24792 -14.90805 -14.59706 -14.43452 -14.31929 -14.11533 -13.98423 -13.80613 -13.66941 -13.55505 -13.46600 -13.10901 -13.05198 -12.83136 -12.75520 -12.72913 -12.51614 -12.44593 -12.27673 -11.93853 -11.68589 -11.57730 -11.54823 -11.23799 -10.82924 -10.67307 -10.45704 -9.64186 -9.35822 -9.04051 -8.36383 -7.71065 -5.40630 0.88035 1.45607 1.48615 1.56535 1.57738 1.89852 2.23795 2.44702 2.57789 3.39193 3.57800 3.78385 3.81848 3.88653 4.04791 4.10770 4.16301 4.22465 4.27990 4.34961 4.44029 4.47560 4.49330 4.52314 4.65559 4.67348 4.68719 4.76591 4.76951 4.82509 4.89535 4.96085 4.97901 5.03685 5.06071 5.11071 5.11785 5.21274 5.28672 5.48393 5.62456 5.66833 5.73212 5.84126 5.85981 6.16516 6.44138 6.59543 6.63964 7.15211 7.28716 7.33014 7.92119 8.47105 9.25371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.003212 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.657263 B = 8715.838389 C = 9393.987353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.084 3.916 3 C -0.261 4.261 4 C 0.582 3.418 5 O -0.600 6.600 6 N -0.601 5.601 7 C 0.105 3.895 8 C -0.121 4.121 9 C -0.110 4.110 10 C 0.171 3.829 11 H 0.045 0.955 12 N -0.582 5.582 13 C -0.230 4.230 14 H 0.042 0.958 15 C -0.029 4.029 16 N -0.922 5.922 17 Si 0.952 3.048 18 H -0.281 1.281 19 H -0.294 1.294 20 H -0.281 1.281 21 C 0.142 3.858 22 C 0.067 3.933 23 O -0.572 6.572 24 C 0.123 3.877 25 C -0.187 4.187 26 C -0.001 4.001 27 N -0.442 5.442 28 C 0.060 3.940 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.248 0.752 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.374 0.626 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.154 0.846 47 H 0.206 0.794 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -26.129 3.035 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 C -0.271 4.271 4 C 0.374 3.626 5 O -0.483 6.483 6 N -0.332 5.332 7 C -0.016 4.016 8 C -0.159 4.159 9 C -0.149 4.149 10 C 0.063 3.937 11 H 0.063 0.937 12 N -0.302 5.302 13 C -0.360 4.360 14 H 0.060 0.940 15 C -0.225 4.225 16 N -0.567 5.567 17 Si 0.781 3.219 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.206 1.206 21 C 0.016 3.984 22 C -0.013 4.013 23 O -0.377 6.377 24 C -0.001 4.001 25 C -0.211 4.211 26 C -0.128 4.128 27 N -0.117 5.117 28 C -0.080 4.080 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.220 0.780 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.172 0.828 47 H 0.223 0.777 48 H 0.104 0.896 49 H 0.112 0.888 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.034 -26.066 2.833 26.220 hybrid contribution -0.130 1.521 0.747 1.699 sum -0.096 -24.546 3.580 24.806 Atomic orbital electron populations 1.20489 0.86975 1.04150 1.03461 1.20334 0.94163 0.85710 1.03125 1.20075 0.95563 0.90562 1.20891 1.18042 0.81380 0.85495 0.77657 1.90673 1.29141 1.82138 1.46324 1.48078 1.33619 1.06527 1.44955 1.22269 0.87901 1.02252 0.89221 1.21968 1.02689 0.94491 0.96794 1.21732 0.98616 0.95495 0.99080 1.20671 0.95846 0.84638 0.92552 0.93716 1.43732 1.14093 1.00436 1.71978 1.18796 1.13460 1.00731 1.03051 0.94034 1.25801 0.99767 1.01537 0.95365 1.69989 1.48622 1.24800 1.13318 0.85536 0.79073 0.78962 0.78344 1.20764 1.22081 1.20612 1.20977 0.84554 1.01024 0.91861 1.22901 0.97384 0.91447 0.89519 1.86744 1.51662 1.67900 1.31415 1.21771 0.99605 0.79618 0.99138 1.22200 0.94698 0.94597 1.09578 1.22253 0.86191 0.95871 1.08440 1.43789 1.05799 1.06888 1.55239 1.22424 1.02914 0.77908 1.04758 0.90057 0.88821 0.91454 0.91123 0.86435 0.92127 0.88656 0.94174 0.93341 0.94315 0.90895 0.94065 0.93399 0.95796 0.78020 0.92701 0.93231 0.82830 0.77695 0.89610 0.88805 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.59 71.23 0.68 -1.25 16 2 C 0.08 1.96 6.88 41.78 0.29 2.25 16 3 C -0.26 -7.50 5.41 -19.04 -0.10 -7.60 16 4 C 0.58 21.66 7.48 86.62 0.65 22.31 16 5 O -0.60 -26.67 14.94 -4.12 -0.06 -26.73 16 6 N -0.60 -21.65 2.97 -822.10 -2.44 -24.08 16 7 C 0.11 2.95 5.52 86.51 0.48 3.42 16 8 C -0.12 -3.53 6.10 30.82 0.19 -3.34 16 9 C -0.11 -4.39 5.11 30.62 0.16 -4.24 16 10 C 0.17 7.54 2.79 45.07 0.13 7.67 16 11 H 0.04 1.98 7.85 -2.39 -0.02 1.96 16 12 N -0.58 -29.87 2.30 -677.61 -1.56 -31.43 16 13 C -0.23 -12.91 7.93 84.03 0.67 -12.24 16 14 H 0.04 2.41 6.76 -2.91 -0.02 2.39 16 15 C -0.03 -1.63 5.12 84.86 0.43 -1.20 16 16 N -0.92 -54.82 11.27 21.65 0.24 -54.58 16 17 Si 0.95 47.07 29.57 68.60 2.03 49.10 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 20 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 21 C 0.14 7.07 5.56 86.38 0.48 7.55 16 22 C 0.07 2.88 7.39 71.98 0.53 3.41 16 23 O -0.57 -25.78 13.35 -148.98 -1.99 -27.77 16 24 C 0.12 5.33 5.77 86.36 0.50 5.83 16 25 C -0.19 -4.00 8.64 23.62 0.20 -3.80 16 26 C 0.00 -0.01 11.34 83.12 0.94 0.93 16 27 N -0.44 -6.87 3.09 -533.20 -1.65 -8.51 16 28 C 0.06 0.34 10.61 127.77 1.36 1.70 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 1.29 7.59 -2.38 -0.02 1.27 16 31 H 0.07 1.87 6.60 -2.39 -0.02 1.86 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.12 2.75 4.54 -2.39 -0.01 2.74 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 2.11 7.70 -2.39 -0.02 2.09 16 38 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 39 H 0.07 4.17 5.57 -2.39 -0.01 4.16 16 40 H 0.04 1.93 8.02 -2.39 -0.02 1.91 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.37 12.47 9.12 -74.06 -0.68 11.80 16 44 H 0.05 2.64 6.99 -2.39 -0.02 2.63 16 45 H 0.05 2.30 6.84 -2.39 -0.02 2.28 16 46 H 0.15 2.93 7.26 -2.91 -0.02 2.91 16 47 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.09 0.39 7.50 -2.39 -0.02 0.38 16 50 H 0.11 0.11 8.13 -2.39 -0.02 0.09 16 Total: -1.00 -79.32 392.02 2.42 -76.89 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.27 Total: 25.72 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 7.58 Total: 21.40 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -5.40 Total: -118.61 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -2.05 Total: -54.50 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.32 2.42 -76.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264634337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.172 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds