Wall clock time and date at job start Tue Mar 31 2020 18:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36766 * 125.79948 * 2 1 4 4 C 1.47260 * 126.94423 * 359.97438 * 3 2 1 5 5 O 1.21624 * 119.99790 * 315.29610 * 4 3 2 6 6 N 1.34775 * 120.00025 * 135.29743 * 4 3 2 7 7 C 1.46928 * 120.62875 * 3.61422 * 6 4 3 8 8 C 1.52754 * 109.01018 * 233.58359 * 7 6 4 9 9 C 1.53040 * 109.38520 * 305.59335 * 8 7 6 10 10 C 1.53034 * 109.54218 * 61.23494 * 9 8 7 11 11 H 1.09005 * 109.49191 * 58.58836 * 10 9 8 12 12 N 1.46491 * 109.52737 * 178.66949 * 10 9 8 13 13 C 1.36944 * 120.00282 * 59.85494 * 12 10 9 14 14 H 1.08005 * 119.99542 * 320.85376 * 13 12 10 15 15 C 1.38805 * 120.00233 * 140.84654 * 13 12 10 16 16 N 1.31623 * 120.00152 * 339.56453 * 15 13 12 17 17 Si 1.86795 * 120.00015 * 159.55602 * 15 13 12 18 18 H 1.48505 * 109.47122 * 90.00250 * 17 15 13 19 19 H 1.48502 * 109.47504 * 210.00614 * 17 15 13 20 20 H 1.48509 * 109.47189 * 330.00418 * 17 15 13 21 21 C 1.46506 * 120.00255 * 239.85741 * 12 10 9 22 22 C 1.52997 * 109.47242 * 84.41046 * 21 12 10 23 23 O 1.42903 * 109.46815 * 64.99945 * 22 21 12 24 24 C 1.46928 * 120.63360 * 183.89754 * 6 4 3 25 25 C 1.46688 * 106.11295 * 179.97438 * 3 2 1 26 26 C 1.34490 * 106.33344 * 359.97438 * 25 3 2 27 27 N 1.34657 * 125.79760 * 180.24344 * 2 1 3 28 28 C 1.46503 * 124.85665 * 0.03631 * 27 2 1 29 29 H 1.08998 * 109.47174 * 90.00126 * 1 2 3 30 30 H 1.09002 * 109.46931 * 210.00294 * 1 2 3 31 31 H 1.08996 * 109.46915 * 330.00158 * 1 2 3 32 32 H 1.09007 * 109.58904 * 353.42230 * 7 6 4 33 33 H 1.09007 * 109.58794 * 113.84626 * 7 6 4 34 34 H 1.09004 * 109.56659 * 185.55141 * 8 7 6 35 35 H 1.09006 * 109.38954 * 65.51575 * 8 7 6 36 36 H 1.09006 * 109.45644 * 301.21704 * 9 8 7 37 37 H 1.08997 * 109.45990 * 181.26434 * 9 8 7 38 38 H 0.96998 * 119.99546 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.47112 * 204.41210 * 21 12 10 40 40 H 1.08996 * 109.46675 * 324.41134 * 21 12 10 41 41 H 1.08999 * 109.47511 * 185.00170 * 22 21 12 42 42 H 1.09005 * 109.47178 * 305.00413 * 22 21 12 43 43 H 0.96704 * 113.99696 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.58054 * 246.15607 * 24 6 4 45 45 H 1.08994 * 109.58060 * 6.58026 * 24 6 4 46 46 H 1.07995 * 126.83451 * 180.02562 * 25 3 2 47 47 H 1.08000 * 125.57205 * 179.97438 * 26 25 3 48 48 H 1.09000 * 109.46642 * 270.18138 * 28 27 2 49 49 H 1.09001 * 109.46673 * 30.17731 * 28 27 2 50 50 H 1.08998 * 109.46890 * 150.18146 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.9752 2.8740 -0.7419 6 7 2.4623 3.4054 0.8205 7 6 3.5969 3.0059 1.6642 8 6 3.2910 3.3718 3.1153 9 6 2.9366 4.8582 3.2006 10 6 1.6902 5.1364 2.3574 11 1 0.8633 4.5242 2.7176 12 7 1.3327 6.5529 2.4646 13 6 2.2229 7.5156 2.0695 14 1 3.2759 7.3952 2.2773 15 6 1.7719 8.6460 1.4020 16 7 0.6033 8.6305 0.7966 17 14 2.8234 10.1895 1.3633 18 1 3.7170 10.1500 0.1779 19 1 1.9456 11.3846 1.2819 20 1 3.6435 10.2609 2.5993 21 6 0.0227 6.9398 2.9945 22 6 0.0815 6.9769 4.5229 23 8 0.9779 8.0087 4.9401 24 6 1.9815 4.7919 0.8935 25 6 3.6882 0.6151 0.0006 26 6 3.6096 -0.7275 0.0015 27 7 2.2947 -1.0922 -0.0046 28 6 1.8094 -2.4745 -0.0113 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.7503 1.9296 1.5846 33 1 4.4959 3.5301 1.3398 34 1 4.1651 3.1700 3.7347 35 1 2.4493 2.7763 3.4690 36 1 3.7696 5.4522 2.8242 37 1 2.7400 5.1256 4.2387 38 1 0.2881 9.4205 0.3304 39 1 -0.2448 7.9267 2.6171 40 1 -0.7262 6.2142 2.6772 41 1 -0.9135 7.1775 4.9201 42 1 0.4349 6.0158 4.8964 43 1 1.0645 8.0902 5.8998 44 1 2.7461 5.4646 0.5049 45 1 1.0693 4.8936 0.3056 46 1 4.5890 1.2108 0.0012 47 1 4.4498 -1.4061 0.0018 48 1 1.6855 -2.8209 1.0148 49 1 0.8511 -2.5205 -0.5286 50 1 2.5306 -3.1102 -0.5249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264634338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:59 Heat of formation + Delta-G solvation = -4.661230 kcal Electronic energy + Delta-G solvation = -30568.597915 eV Core-core repulsion = 26597.775150 eV Total energy + Delta-G solvation = -3970.822766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.40594 -39.22832 -37.19420 -36.04244 -34.50363 -33.00235 -31.90845 -31.67500 -31.08787 -29.61435 -27.44462 -26.65891 -26.41499 -24.66219 -23.92318 -22.24631 -21.69974 -20.45996 -20.02135 -19.28835 -18.03433 -17.04970 -16.54110 -16.30887 -16.00742 -15.54939 -15.27624 -14.78251 -14.35071 -14.30579 -14.05937 -13.65952 -13.50602 -13.38800 -13.27243 -13.18609 -12.83268 -12.74645 -12.57759 -12.42168 -12.39652 -12.19444 -12.05833 -11.75494 -11.56314 -11.20854 -11.08506 -10.78474 -10.57047 -10.53260 -10.31424 -9.99876 -9.91748 -9.75229 -9.48024 -9.34217 -9.04144 -8.51246 -8.29962 -8.18181 -7.91150 -6.40890 -5.64278 -3.19922 1.98809 2.47207 2.71735 3.48066 3.49746 3.55477 3.61379 3.78604 4.48377 4.63358 4.68342 4.82228 4.84794 5.05757 5.15834 5.17971 5.22606 5.30882 5.43670 5.50856 5.53244 5.58815 5.63803 5.66620 5.87617 5.91828 5.95975 6.00659 6.08764 6.11081 6.14373 6.27504 6.33763 6.43697 6.46358 6.64430 6.75085 6.79450 6.82244 6.89553 7.02140 7.09957 7.18924 7.21568 7.31493 7.70986 7.98529 8.07746 8.51597 8.71161 8.81353 9.32729 9.95938 10.53310 11.38630 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.003144 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.412865 B = 8904.593467 C = 9120.750080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.083 3.917 3 C -0.216 4.216 4 C 0.585 3.415 5 O -0.550 6.550 6 N -0.600 5.600 7 C 0.101 3.899 8 C -0.131 4.131 9 C -0.125 4.125 10 C 0.168 3.832 11 H 0.046 0.954 12 N -0.567 5.567 13 C -0.241 4.241 14 H 0.056 0.944 15 C 0.018 3.982 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.149 3.851 22 C 0.059 3.941 23 O -0.544 6.544 24 C 0.109 3.891 25 C -0.168 4.168 26 C -0.021 4.021 27 N -0.449 5.449 28 C 0.070 3.930 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.252 0.748 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.349 0.651 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -21.881 3.795 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C -0.225 4.225 4 C 0.373 3.627 5 O -0.428 6.428 6 N -0.332 5.332 7 C -0.022 4.022 8 C -0.170 4.170 9 C -0.165 4.165 10 C 0.059 3.941 11 H 0.064 0.936 12 N -0.287 5.287 13 C -0.371 4.371 14 H 0.074 0.926 15 C -0.182 4.182 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.022 3.978 22 C -0.021 4.021 23 O -0.345 6.345 24 C -0.014 4.014 25 C -0.193 4.193 26 C -0.147 4.147 27 N -0.126 5.126 28 C -0.072 4.072 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.191 0.809 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.164 0.836 47 H 0.182 0.818 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.755 -21.789 2.624 22.118 hybrid contribution 0.627 0.695 0.716 1.179 sum 3.382 -21.094 3.340 21.623 Atomic orbital electron populations 1.20385 0.87488 1.03159 1.03314 1.20143 0.93475 0.85133 1.04390 1.20236 0.93347 0.92321 1.16641 1.17436 0.81463 0.83977 0.79823 1.90764 1.31587 1.79875 1.40616 1.48145 1.32761 1.11677 1.40619 1.21861 0.88743 1.01166 0.90412 1.21844 1.00975 0.98291 0.95856 1.21962 1.00556 0.93414 1.00527 1.20632 0.94256 0.87143 0.92029 0.93609 1.43633 1.15000 0.98922 1.71103 1.18736 0.89913 0.98484 1.29961 0.92628 1.25122 0.96973 0.99980 0.96112 1.70013 1.20862 1.28369 1.34017 0.86424 0.79821 0.83525 0.77628 1.21693 1.21808 1.20376 1.20941 0.86903 1.02574 0.87345 1.23099 0.89840 0.88763 1.00401 1.86854 1.67080 1.56247 1.24297 1.22284 1.01089 0.78387 0.99601 1.22011 0.95757 0.93269 1.08222 1.21634 0.85320 0.96139 1.11583 1.43436 1.05938 1.05849 1.57371 1.22035 1.01583 0.80320 1.03229 0.90326 0.91981 0.89597 0.89008 0.92023 0.91753 0.92455 0.91642 0.92646 0.93777 0.88376 0.94497 0.96266 0.95964 0.80861 0.90804 0.89577 0.83581 0.81794 0.90932 0.89820 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.35 36.01 0.34 -0.65 16 2 C 0.08 1.09 6.89 -81.88 -0.56 0.53 16 3 C -0.22 -3.32 5.38 -103.35 -0.56 -3.87 16 4 C 0.58 11.17 7.24 -12.59 -0.09 11.08 16 5 O -0.55 -12.53 16.15 5.26 0.08 -12.45 16 6 N -0.60 -11.05 2.98 -174.36 -0.52 -11.57 16 7 C 0.10 1.49 5.81 -3.93 -0.02 1.47 16 8 C -0.13 -1.90 6.06 -26.84 -0.16 -2.06 16 9 C -0.13 -2.29 5.11 -26.69 -0.14 -2.43 16 10 C 0.17 3.56 2.78 -67.82 -0.19 3.37 16 11 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 12 N -0.57 -13.95 2.31 -165.54 -0.38 -14.33 16 13 C -0.24 -6.55 7.88 -15.06 -0.12 -6.67 16 14 H 0.06 1.53 6.90 -52.48 -0.36 1.17 16 15 C 0.02 0.51 4.90 -17.43 -0.09 0.42 16 16 N -0.89 -26.21 11.62 55.49 0.64 -25.57 16 17 Si 0.90 22.58 29.60 -169.99 -5.03 17.55 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 C 0.15 3.55 5.56 -4.04 -0.02 3.53 16 22 C 0.06 1.19 7.39 37.16 0.27 1.46 16 23 O -0.54 -11.46 13.40 -35.23 -0.47 -11.93 16 24 C 0.11 2.40 5.76 -3.71 -0.02 2.38 16 25 C -0.17 -2.07 8.66 -37.50 -0.32 -2.39 16 26 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 27 N -0.45 -4.49 3.09 -119.88 -0.37 -4.86 16 28 C 0.07 0.38 10.61 59.85 0.63 1.02 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 31 H 0.09 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.09 1.19 4.26 -51.93 -0.22 0.96 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.29 7.06 -51.93 -0.37 0.93 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.10 2.69 5.69 -51.93 -0.30 2.40 16 40 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.35 5.34 9.12 45.56 0.42 5.76 16 44 H 0.07 1.77 7.51 -51.93 -0.39 1.38 16 45 H 0.09 2.17 7.02 -51.93 -0.36 1.81 16 46 H 0.15 1.60 7.41 -52.49 -0.39 1.22 16 47 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.39 7.50 -51.93 -0.39 0.00 16 50 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -35.22 394.64 -8.69 -43.92 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.35 Total: 6.52 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.24 Total: 6.79 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.63 Total: -56.34 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.39 Total: -24.38 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.22 -8.69 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264634338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.255 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds