Wall clock time and date at job start Tue Mar 31 2020 18:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36766 * 125.79948 * 2 1 4 4 C 1.47260 * 126.94423 * 359.97438 * 3 2 1 5 5 O 1.21624 * 119.99790 * 315.29610 * 4 3 2 6 6 N 1.34775 * 120.00025 * 135.29743 * 4 3 2 7 7 C 1.46928 * 120.62875 * 3.61422 * 6 4 3 8 8 C 1.52754 * 109.01018 * 233.58359 * 7 6 4 9 9 C 1.53040 * 109.38520 * 305.59335 * 8 7 6 10 10 C 1.53034 * 109.54218 * 61.23494 * 9 8 7 11 11 H 1.09005 * 109.49191 * 58.58836 * 10 9 8 12 12 N 1.46491 * 109.52737 * 178.66949 * 10 9 8 13 13 C 1.36944 * 120.00282 * 59.85494 * 12 10 9 14 14 H 1.08005 * 119.99542 * 320.85376 * 13 12 10 15 15 C 1.38805 * 120.00233 * 140.84654 * 13 12 10 16 16 N 1.31623 * 120.00152 * 339.56453 * 15 13 12 17 17 Si 1.86795 * 120.00015 * 159.55602 * 15 13 12 18 18 H 1.48505 * 109.47122 * 90.00250 * 17 15 13 19 19 H 1.48502 * 109.47504 * 210.00614 * 17 15 13 20 20 H 1.48509 * 109.47189 * 330.00418 * 17 15 13 21 21 C 1.46506 * 120.00255 * 239.85741 * 12 10 9 22 22 C 1.52997 * 109.47242 * 84.41046 * 21 12 10 23 23 O 1.42903 * 109.46815 * 64.99945 * 22 21 12 24 24 C 1.46928 * 120.63360 * 183.89754 * 6 4 3 25 25 C 1.46688 * 106.11295 * 179.97438 * 3 2 1 26 26 C 1.34490 * 106.33344 * 359.97438 * 25 3 2 27 27 N 1.34657 * 125.79760 * 180.24344 * 2 1 3 28 28 C 1.46503 * 124.85665 * 0.03631 * 27 2 1 29 29 H 1.08998 * 109.47174 * 90.00126 * 1 2 3 30 30 H 1.09002 * 109.46931 * 210.00294 * 1 2 3 31 31 H 1.08996 * 109.46915 * 330.00158 * 1 2 3 32 32 H 1.09007 * 109.58904 * 353.42230 * 7 6 4 33 33 H 1.09007 * 109.58794 * 113.84626 * 7 6 4 34 34 H 1.09004 * 109.56659 * 185.55141 * 8 7 6 35 35 H 1.09006 * 109.38954 * 65.51575 * 8 7 6 36 36 H 1.09006 * 109.45644 * 301.21704 * 9 8 7 37 37 H 1.08997 * 109.45990 * 181.26434 * 9 8 7 38 38 H 0.96998 * 119.99546 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.47112 * 204.41210 * 21 12 10 40 40 H 1.08996 * 109.46675 * 324.41134 * 21 12 10 41 41 H 1.08999 * 109.47511 * 185.00170 * 22 21 12 42 42 H 1.09005 * 109.47178 * 305.00413 * 22 21 12 43 43 H 0.96704 * 113.99696 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.58054 * 246.15607 * 24 6 4 45 45 H 1.08994 * 109.58060 * 6.58026 * 24 6 4 46 46 H 1.07995 * 126.83451 * 180.02562 * 25 3 2 47 47 H 1.08000 * 125.57205 * 179.97438 * 26 25 3 48 48 H 1.09000 * 109.46642 * 270.18138 * 28 27 2 49 49 H 1.09001 * 109.46673 * 30.17731 * 28 27 2 50 50 H 1.08998 * 109.46890 * 150.18146 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.9752 2.8740 -0.7419 6 7 2.4623 3.4054 0.8205 7 6 3.5969 3.0059 1.6642 8 6 3.2910 3.3718 3.1153 9 6 2.9366 4.8582 3.2006 10 6 1.6902 5.1364 2.3574 11 1 0.8633 4.5242 2.7176 12 7 1.3327 6.5529 2.4646 13 6 2.2229 7.5156 2.0695 14 1 3.2759 7.3952 2.2773 15 6 1.7719 8.6460 1.4020 16 7 0.6033 8.6305 0.7966 17 14 2.8234 10.1895 1.3633 18 1 3.7170 10.1500 0.1779 19 1 1.9456 11.3846 1.2819 20 1 3.6435 10.2609 2.5993 21 6 0.0227 6.9398 2.9945 22 6 0.0815 6.9769 4.5229 23 8 0.9779 8.0087 4.9401 24 6 1.9815 4.7919 0.8935 25 6 3.6882 0.6151 0.0006 26 6 3.6096 -0.7275 0.0015 27 7 2.2947 -1.0922 -0.0046 28 6 1.8094 -2.4745 -0.0113 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.7503 1.9296 1.5846 33 1 4.4959 3.5301 1.3398 34 1 4.1651 3.1700 3.7347 35 1 2.4493 2.7763 3.4690 36 1 3.7696 5.4522 2.8242 37 1 2.7400 5.1256 4.2387 38 1 0.2881 9.4205 0.3304 39 1 -0.2448 7.9267 2.6171 40 1 -0.7262 6.2142 2.6772 41 1 -0.9135 7.1775 4.9201 42 1 0.4349 6.0158 4.8964 43 1 1.0645 8.0902 5.8998 44 1 2.7461 5.4646 0.5049 45 1 1.0693 4.8936 0.3056 46 1 4.5890 1.2108 0.0012 47 1 4.4498 -1.4061 0.0018 48 1 1.6855 -2.8209 1.0148 49 1 0.8511 -2.5205 -0.5286 50 1 2.5306 -3.1102 -0.5249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264634338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:58 Heat of formation + Delta-G solvation = -29.358426 kcal Electronic energy + Delta-G solvation = -30569.668866 eV Core-core repulsion = 26597.775150 eV Total energy + Delta-G solvation = -3971.893716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.32208 -40.68602 -38.86889 -37.64606 -36.23781 -34.09118 -33.39167 -32.83245 -32.57851 -31.25729 -29.15300 -27.82969 -27.19537 -26.10332 -25.72477 -23.76995 -22.89481 -22.05149 -21.36052 -20.66769 -19.16794 -18.33368 -18.20627 -17.99932 -17.22466 -16.79809 -16.62785 -16.34084 -15.98051 -15.81916 -15.40816 -15.21058 -14.97070 -14.74291 -14.39733 -14.22370 -14.07358 -14.03798 -13.92128 -13.64676 -13.51127 -13.38492 -13.13833 -13.09945 -12.93044 -12.78961 -12.71958 -12.51568 -12.43595 -12.20527 -11.89398 -11.78766 -11.58035 -11.57275 -11.27394 -10.84517 -10.63101 -10.41744 -9.61598 -9.34822 -9.03762 -8.45128 -7.75791 -5.34961 0.92732 1.45085 1.47897 1.57140 1.58010 1.88926 2.19918 2.41997 2.57782 3.35807 3.57351 3.80667 3.82024 3.87922 4.03962 4.10037 4.16114 4.21820 4.27965 4.35333 4.43602 4.49432 4.50711 4.54545 4.62880 4.68165 4.70010 4.75201 4.77861 4.81971 4.92852 4.96355 4.98773 5.02575 5.05949 5.11527 5.12762 5.19260 5.25785 5.47323 5.60397 5.64943 5.71957 5.80332 5.84040 6.16284 6.45079 6.54578 6.64929 7.19980 7.27013 7.33701 7.92361 8.45729 9.23142 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.003144 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.412865 B = 8904.593467 C = 9120.750080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 C -0.256 4.256 4 C 0.578 3.422 5 O -0.604 6.604 6 N -0.600 5.600 7 C 0.099 3.901 8 C -0.119 4.119 9 C -0.113 4.113 10 C 0.170 3.830 11 H 0.046 0.954 12 N -0.581 5.581 13 C -0.231 4.231 14 H 0.052 0.948 15 C -0.036 4.036 16 N -0.924 5.924 17 Si 0.952 3.048 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.273 1.273 21 C 0.143 3.857 22 C 0.073 3.927 23 O -0.573 6.573 24 C 0.127 3.873 25 C -0.189 4.189 26 C 0.003 3.997 27 N -0.441 5.441 28 C 0.060 3.940 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.246 0.754 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.376 0.624 44 H 0.045 0.955 45 H 0.039 0.961 46 H 0.155 0.845 47 H 0.209 0.791 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -25.716 5.815 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C -0.267 4.267 4 C 0.370 3.630 5 O -0.486 6.486 6 N -0.332 5.332 7 C -0.022 4.022 8 C -0.158 4.158 9 C -0.152 4.152 10 C 0.062 3.938 11 H 0.064 0.936 12 N -0.301 5.301 13 C -0.361 4.361 14 H 0.070 0.930 15 C -0.232 4.232 16 N -0.569 5.569 17 Si 0.781 3.219 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.198 1.198 21 C 0.017 3.983 22 C -0.007 4.007 23 O -0.378 6.378 24 C 0.002 3.998 25 C -0.213 4.213 26 C -0.124 4.124 27 N -0.117 5.117 28 C -0.080 4.080 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.172 0.828 47 H 0.225 0.775 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.943 -25.678 4.702 26.569 hybrid contribution -0.059 1.735 0.071 1.737 sum 4.884 -23.943 4.773 24.898 Atomic orbital electron populations 1.20353 0.87123 1.03420 1.03203 1.20246 0.94027 0.85760 1.03818 1.20068 0.95818 0.90323 1.20442 1.18158 0.80489 0.85705 0.78683 1.90717 1.34099 1.81079 1.42752 1.48186 1.33745 1.09975 1.41253 1.22147 0.87284 1.02920 0.89853 1.21799 1.02759 0.95071 0.96155 1.21788 0.97859 0.96152 0.99431 1.20736 0.95861 0.85356 0.91826 0.93582 1.43832 1.14824 0.99922 1.71518 1.18874 0.90124 0.98835 1.28314 0.93016 1.25768 0.98172 1.02593 0.96694 1.70158 1.22585 1.28507 1.35679 0.85535 0.78345 0.80379 0.77644 1.21465 1.22334 1.19755 1.20883 0.86604 1.00386 0.90416 1.22792 0.91328 0.89461 0.97138 1.86764 1.67390 1.56550 1.27072 1.21770 0.98071 0.80533 0.99426 1.22150 0.94463 0.94644 1.10037 1.22264 0.86168 0.95774 1.08156 1.43753 1.05768 1.06805 1.55331 1.22429 1.02754 0.77832 1.04968 0.90657 0.88389 0.92564 0.86304 0.91386 0.87963 0.91946 0.93266 0.92413 0.94499 0.92164 0.94706 0.93506 0.94263 0.77768 0.93625 0.94209 0.82751 0.77467 0.89128 0.89116 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 9.35 71.24 0.67 -1.21 16 2 C 0.08 1.94 6.89 41.78 0.29 2.23 16 3 C -0.26 -7.79 5.38 -19.04 -0.10 -7.89 16 4 C 0.58 23.23 7.24 86.62 0.63 23.85 16 5 O -0.60 -29.83 16.15 -4.11 -0.07 -29.90 16 6 N -0.60 -22.95 2.98 -823.80 -2.45 -25.41 16 7 C 0.10 2.79 5.81 86.22 0.50 3.29 16 8 C -0.12 -3.16 6.06 30.53 0.19 -2.98 16 9 C -0.11 -4.04 5.11 30.62 0.16 -3.88 16 10 C 0.17 7.43 2.78 45.07 0.13 7.56 16 11 H 0.05 2.00 7.87 -2.38 -0.02 1.98 16 12 N -0.58 -29.59 2.31 -677.63 -1.57 -31.16 16 13 C -0.23 -12.96 7.88 84.03 0.66 -12.30 16 14 H 0.05 2.92 6.90 -2.91 -0.02 2.89 16 15 C -0.04 -2.11 4.90 84.86 0.42 -1.69 16 16 N -0.92 -57.40 11.62 21.65 0.25 -57.14 16 17 Si 0.95 47.87 29.60 68.60 2.03 49.90 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 21 C 0.14 7.07 5.56 86.38 0.48 7.55 16 22 C 0.07 2.84 7.39 71.98 0.53 3.37 16 23 O -0.57 -23.52 13.40 -148.98 -2.00 -25.52 16 24 C 0.13 5.96 5.76 86.36 0.50 6.45 16 25 C -0.19 -4.19 8.66 23.62 0.20 -3.99 16 26 C 0.00 0.05 11.34 83.12 0.94 0.99 16 27 N -0.44 -7.17 3.09 -533.18 -1.65 -8.82 16 28 C 0.06 0.37 10.61 127.77 1.36 1.73 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.40 7.59 -2.39 -0.02 1.38 16 31 H 0.06 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.12 2.78 4.26 -2.38 -0.01 2.77 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 34 H 0.10 2.04 8.14 -2.38 -0.02 2.03 16 35 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.05 1.92 7.06 -2.38 -0.02 1.90 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.06 3.47 5.69 -2.39 -0.01 3.45 16 40 H 0.03 1.67 8.04 -2.39 -0.02 1.65 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.38 10.72 9.12 -74.05 -0.68 10.05 16 44 H 0.05 2.35 7.51 -2.39 -0.02 2.33 16 45 H 0.04 2.20 7.02 -2.39 -0.02 2.19 16 46 H 0.15 3.02 7.41 -2.91 -0.02 2.99 16 47 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 48 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.09 0.48 7.50 -2.39 -0.02 0.46 16 50 H 0.11 0.17 8.13 -2.39 -0.02 0.15 16 Total: -1.00 -84.08 394.64 2.36 -81.73 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.27 Total: 23.23 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.54 Total: 23.08 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.41 Total: -122.53 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -2.06 Total: -55.42 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -84.08 2.36 -81.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264634338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.369 kcal (2) G-P(sol) polarization free energy of solvation -84.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds