Wall clock time and date at job start Tue Mar 31 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 110.91070 * 2 1 4 4 O 1.21282 * 119.99476 * 236.03395 * 3 2 1 5 5 N 1.34768 * 120.00120 * 56.03129 * 3 2 1 6 6 C 1.46504 * 120.00115 * 179.72205 * 5 3 2 7 7 C 1.52998 * 109.47157 * 180.27936 * 6 5 3 8 8 H 1.09002 * 109.46992 * 294.99695 * 7 6 5 9 9 N 1.46890 * 109.47324 * 55.00263 * 7 6 5 10 10 C 1.46902 * 111.00137 * 222.69639 * 9 7 6 11 11 C 1.50701 * 109.47356 * 186.10899 * 10 9 7 12 12 O 1.21294 * 119.99678 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.37104 * 119.99973 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99555 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99935 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99687 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99559 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47389 * 60.00359 * 18 16 14 20 20 H 1.48505 * 109.46460 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47462 * 299.99761 * 18 16 14 22 22 C 1.53002 * 109.46946 * 175.00586 * 7 6 5 23 23 C 1.53002 * 117.49685 * 251.53838 * 22 7 6 24 24 C 1.53001 * 117.50081 * 182.88394 * 22 7 6 25 25 C 1.54628 * 111.07372 * 123.98643 * 2 1 3 26 26 C 1.51106 * 104.72678 * 142.68009 * 25 2 1 27 27 C 1.30529 * 111.10240 * 343.56877 * 26 25 2 28 28 C 1.51107 * 111.10623 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47796 * 60.70190 * 1 2 3 30 30 H 1.09004 * 109.46720 * 180.70457 * 1 2 3 31 31 H 1.09004 * 109.47050 * 300.70086 * 1 2 3 32 32 H 0.96998 * 120.00283 * 0.02562 * 5 3 2 33 33 H 1.09004 * 109.47202 * 300.28212 * 6 5 3 34 34 H 1.08999 * 109.46688 * 60.27690 * 6 5 3 35 35 H 1.00904 * 111.00186 * 346.65390 * 9 7 6 36 36 H 1.08997 * 109.47565 * 306.11176 * 10 9 7 37 37 H 1.09002 * 109.46811 * 66.11724 * 10 9 7 38 38 H 0.97001 * 120.00272 * 0.02562 * 13 11 10 39 39 H 0.97005 * 119.99586 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.55269 * 37.20404 * 22 7 6 41 41 H 1.09006 * 117.49805 * 359.97438 * 23 22 7 42 42 H 1.09000 * 117.49883 * 145.01613 * 23 22 7 43 43 H 1.09003 * 117.50019 * 214.98127 * 24 22 7 44 44 H 1.09005 * 117.49434 * 359.96701 * 24 22 7 45 45 H 1.08991 * 110.39237 * 261.49565 * 25 2 1 46 46 H 1.09002 * 110.38472 * 23.87409 * 25 2 1 47 47 H 1.07998 * 124.45172 * 163.58359 * 26 25 2 48 48 H 1.07995 * 124.44710 * 180.02562 * 27 26 25 49 49 H 1.09002 * 110.38663 * 257.62906 * 28 27 26 50 50 H 1.08999 * 110.48437 * 135.29515 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4078 0.0000 4 8 2.8325 1.7647 -0.8712 5 7 1.6992 2.2700 0.9679 6 6 2.2269 3.6367 0.9714 7 6 1.6604 4.3991 2.1709 8 1 0.5818 4.5068 2.0565 9 7 1.9503 3.6563 3.4045 10 6 0.7842 3.6437 4.2978 11 6 1.1633 3.0062 5.6097 12 8 2.2938 2.6026 5.7836 13 7 0.2464 2.8855 6.5901 14 6 0.5914 2.3060 7.7838 15 1 1.5978 1.9459 7.9383 16 6 -0.3541 2.1812 8.7944 17 7 -1.5788 2.6189 8.6061 18 14 0.1158 1.3910 10.4204 19 1 1.2131 2.1687 11.0499 20 1 -1.0632 1.3777 11.3232 21 1 0.5708 -0.0021 10.1807 22 6 2.3060 5.7842 2.2458 23 6 3.3069 6.0369 3.3751 24 6 1.9192 6.6811 3.4235 25 6 2.0860 -0.8066 1.1964 26 6 3.3086 -1.5080 0.6518 27 6 3.3081 -1.5078 -0.6535 28 6 2.0848 -0.8068 -1.1971 29 1 -0.3635 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 1.0880 1.9844 1.6648 33 1 3.3143 3.6062 1.0408 34 1 1.9357 4.1409 0.0499 35 1 2.2577 2.7177 3.1977 36 1 0.4502 4.6661 4.4738 37 1 -0.0212 3.0727 3.8358 38 1 -0.6576 3.2086 6.4512 39 1 -2.2389 2.5314 9.3114 40 1 2.4965 6.2666 1.2872 41 1 3.5052 5.2165 4.0649 42 1 4.1557 6.6859 3.1594 43 1 1.8555 7.7537 3.2397 44 1 1.2045 6.2845 4.1446 45 1 2.3635 -0.1365 2.0100 46 1 1.3507 -1.5353 1.5375 47 1 4.0812 -1.9514 1.2623 48 1 4.0802 -1.9512 -1.2647 49 1 1.3495 -1.5357 -1.5379 50 1 2.3597 -0.1365 -2.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265369683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:55 Heat of formation + Delta-G solvation = -27.075604 kcal Electronic energy + Delta-G solvation = -29639.094798 eV Core-core repulsion = 25667.300072 eV Total energy + Delta-G solvation = -3971.794726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79081 -39.06367 -37.92611 -37.45207 -35.23672 -34.09665 -33.38121 -32.06064 -31.25038 -29.59579 -28.32563 -26.26352 -25.79963 -24.24852 -23.72832 -22.21347 -21.81478 -20.08602 -19.54119 -19.13606 -19.04782 -17.93262 -17.34589 -16.29214 -16.11843 -15.94875 -15.75692 -15.35865 -14.91872 -14.54353 -14.49604 -14.31264 -13.91913 -13.71525 -13.38151 -13.31132 -13.03345 -12.90103 -12.53657 -12.41098 -12.34026 -12.26917 -11.89534 -11.72757 -11.54135 -11.49035 -11.33667 -11.22725 -11.09287 -10.98439 -10.90854 -10.47162 -10.25041 -10.13174 -9.88347 -9.77717 -9.53317 -9.24776 -9.02329 -8.51772 -8.12679 -7.99911 -6.45377 -3.86252 2.14096 2.51663 2.95790 3.17388 3.23606 3.27781 3.84712 3.88704 4.10240 4.17604 4.28853 4.37550 4.47181 4.64635 4.80438 4.91383 5.05687 5.07541 5.12000 5.14943 5.21511 5.32364 5.33928 5.36771 5.44889 5.48865 5.53244 5.55076 5.59836 5.68426 5.70442 5.74671 5.77598 5.82280 5.90065 5.92595 5.96156 6.09408 6.21898 6.28051 6.39611 6.40247 6.73514 6.75263 7.09997 7.29509 7.51554 7.52078 8.02091 8.07719 8.57173 9.14329 9.50088 10.01496 10.72162 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.003254 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.388650 B = 8602.838622 C =10673.200265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C 0.534 3.466 4 O -0.535 6.535 5 N -0.731 5.731 6 C 0.114 3.886 7 C 0.106 3.894 8 H 0.062 0.938 9 N -0.660 5.660 10 C 0.046 3.954 11 C 0.440 3.560 12 O -0.579 6.579 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.024 3.976 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.178 4.178 25 C -0.090 4.090 26 C -0.169 4.169 27 C -0.160 4.160 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.350 0.650 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.391 0.609 39 H 0.272 0.728 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.126 0.874 48 H 0.124 0.876 49 H 0.081 0.919 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -1.505 -17.900 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C 0.320 3.680 4 O -0.411 6.411 5 N -0.383 5.383 6 C -0.010 4.010 7 C -0.004 4.004 8 H 0.080 0.920 9 N -0.294 5.294 10 C -0.086 4.086 11 C 0.225 3.775 12 O -0.463 6.463 13 N -0.200 5.200 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.178 4.178 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.172 4.172 23 C -0.193 4.193 24 C -0.215 4.215 25 C -0.127 4.127 26 C -0.187 4.187 27 C -0.178 4.178 28 C -0.119 4.119 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.099 0.901 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.619 -0.980 -17.966 18.183 hybrid contribution -1.282 -0.823 0.748 1.697 sum 1.337 -1.802 -17.219 17.364 Atomic orbital electron populations 1.21791 0.91706 1.03234 1.02596 1.21649 0.96987 0.92216 0.98494 1.20211 0.80434 0.86474 0.80898 1.90674 1.35089 1.78315 1.37059 1.46035 1.49627 1.12859 1.29821 1.21654 0.99969 0.81111 0.98253 1.21236 0.98146 0.92974 0.88087 0.92019 1.59982 1.34184 1.21834 1.13380 1.21893 0.91407 1.01517 0.93787 1.19756 0.86505 0.85568 0.85644 1.90539 1.20522 1.53543 1.81723 1.41856 1.11972 1.53340 1.12798 1.19644 0.98482 1.35069 0.89745 0.87987 1.25247 0.94941 0.97748 0.99884 1.69601 1.02988 1.46759 1.34949 0.85933 0.77788 0.79643 0.80964 1.19866 1.20976 1.19914 1.22171 1.05759 0.95216 0.94098 1.22979 0.91600 1.03220 1.01498 1.22916 1.00311 0.97472 1.00803 1.21473 0.96315 0.98395 0.96497 1.23231 0.98349 1.00880 0.96272 1.23203 0.98275 1.00105 0.96169 1.21342 0.95568 0.97765 0.97271 0.91828 0.91004 0.91852 0.76617 0.90294 0.90812 0.82920 0.89313 0.94036 0.77546 0.91809 0.88057 0.86027 0.90200 0.89673 0.88763 0.90388 0.89277 0.85572 0.85786 0.90058 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.36 37.16 0.31 -0.76 16 2 C -0.09 -0.90 0.84 -153.93 -0.13 -1.03 16 3 C 0.53 6.61 6.51 -10.99 -0.07 6.54 16 4 O -0.54 -8.43 15.53 5.56 0.09 -8.34 16 5 N -0.73 -7.98 4.74 -60.29 -0.29 -8.26 16 6 C 0.11 1.28 5.17 -4.04 -0.02 1.26 16 7 C 0.11 1.21 2.66 -67.72 -0.18 1.03 16 8 H 0.06 0.66 7.63 -51.93 -0.40 0.27 16 9 N -0.66 -9.45 3.99 -108.00 -0.43 -9.89 16 10 C 0.05 0.74 5.76 -4.97 -0.03 0.71 16 11 C 0.44 9.74 7.84 -10.99 -0.09 9.65 16 12 O -0.58 -14.96 15.91 5.54 0.09 -14.87 16 13 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 14 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 15 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 17 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 18 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.15 -1.75 5.69 -90.62 -0.52 -2.27 16 23 C -0.16 -2.06 9.86 -26.70 -0.26 -2.33 16 24 C -0.18 -2.19 10.07 -26.70 -0.27 -2.46 16 25 C -0.09 -0.91 5.93 -26.83 -0.16 -1.07 16 26 C -0.17 -1.78 10.78 -35.70 -0.38 -2.17 16 27 C -0.16 -1.63 10.77 -35.69 -0.38 -2.01 16 28 C -0.08 -0.81 5.72 -26.81 -0.15 -0.97 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.06 0.47 7.46 -51.93 -0.39 0.09 16 32 H 0.40 3.96 7.01 -40.82 -0.29 3.68 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.35 5.23 6.88 -39.29 -0.27 4.96 16 36 H 0.09 1.34 5.96 -51.93 -0.31 1.03 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.10 1.02 8.13 -51.93 -0.42 0.59 16 41 H 0.12 1.99 6.99 -51.93 -0.36 1.63 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.28 5.92 -51.93 -0.31 0.98 16 45 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 46 H 0.09 0.80 7.88 -51.93 -0.41 0.39 16 47 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 50 H 0.09 0.98 7.01 -51.93 -0.36 0.61 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -31.39 403.56 -9.36 -40.75 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -7.97 Total: 19.37 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.58 Total: -3.61 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.05 Total: -55.01 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.39 -9.36 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265369683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.673 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds