Wall clock time and date at job start Tue Mar 31 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.91174 * 2 1 4 4 O 1.21281 * 119.99711 * 236.02816 * 3 2 1 5 5 N 1.34782 * 120.00012 * 56.03273 * 3 2 1 6 6 C 1.46500 * 119.99903 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47147 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.47206 * 65.00464 * 7 6 5 9 9 N 1.46900 * 109.47179 * 304.99941 * 7 6 5 10 10 C 1.46899 * 110.99740 * 154.50117 * 9 7 6 11 11 C 1.50703 * 109.46982 * 184.07398 * 10 9 7 12 12 O 1.21299 * 119.99877 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00488 * 180.02562 * 11 10 9 14 14 C 1.37089 * 120.00347 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99991 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99992 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00059 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47150 * 59.99625 * 18 16 14 20 20 H 1.48497 * 109.47202 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46804 * 299.99965 * 18 16 14 22 22 C 1.52997 * 109.47116 * 184.99696 * 7 6 5 23 23 C 1.52994 * 117.50255 * 228.10653 * 22 7 6 24 24 C 1.53002 * 117.50232 * 296.77240 * 22 7 6 25 25 C 1.54638 * 111.06976 * 123.98641 * 2 1 3 26 26 C 1.51104 * 104.72021 * 142.68118 * 25 2 1 27 27 C 1.30528 * 111.10703 * 343.56197 * 26 25 2 28 28 C 1.51098 * 111.10264 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47041 * 60.70441 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.70275 * 1 2 3 31 31 H 1.09001 * 109.46921 * 300.70070 * 1 2 3 32 32 H 0.97001 * 119.99899 * 0.02562 * 5 3 2 33 33 H 1.09000 * 109.46852 * 59.99888 * 6 5 3 34 34 H 1.09011 * 109.46783 * 300.00306 * 6 5 3 35 35 H 1.00896 * 110.99724 * 278.45897 * 9 7 6 36 36 H 1.08995 * 109.47314 * 304.07242 * 10 9 7 37 37 H 1.09000 * 109.47174 * 64.08001 * 10 9 7 38 38 H 0.97007 * 119.99561 * 0.02562 * 13 11 10 39 39 H 0.96996 * 119.99943 * 179.97438 * 17 16 14 40 40 H 1.09010 * 115.54718 * 82.44034 * 22 7 6 41 41 H 1.08999 * 117.50440 * 215.00446 * 23 22 7 42 42 H 1.09006 * 117.49858 * 0.03162 * 23 22 7 43 43 H 1.08996 * 117.49293 * 359.97392 * 24 22 7 44 44 H 1.09000 * 117.49966 * 144.99639 * 24 22 7 45 45 H 1.08996 * 110.39205 * 261.49148 * 25 2 1 46 46 H 1.08999 * 110.38570 * 23.87652 * 25 2 1 47 47 H 1.08001 * 124.44853 * 163.58852 * 26 25 2 48 48 H 1.07995 * 124.44824 * 180.02562 * 27 26 25 49 49 H 1.09003 * 110.38690 * 257.62040 * 28 27 26 50 50 H 1.08997 * 110.48251 * 135.29420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.8326 1.7647 -0.8711 5 7 1.6993 2.2700 0.9681 6 6 2.2226 3.6384 0.9684 7 6 1.6522 4.4023 2.1649 8 1 2.0166 3.9541 3.0894 9 7 0.1850 4.3364 2.1337 10 6 -0.3777 4.4938 3.4815 11 6 -1.8737 4.3213 3.4245 12 8 -2.4177 4.0903 2.3652 13 7 -2.6075 4.4246 4.5503 14 6 -3.9683 4.2671 4.4985 15 1 -4.4525 4.0606 3.5554 16 6 -4.7248 4.3741 5.6591 17 7 -4.1358 4.6268 6.8063 18 14 -6.5790 4.1588 5.5887 19 1 -6.9008 2.8034 5.0744 20 1 -7.1480 4.3189 6.9509 21 1 -7.1621 5.1825 4.6846 22 6 2.0987 5.8641 2.0966 23 6 2.6776 6.4862 3.3688 24 6 3.5986 6.1500 2.1932 25 6 2.0860 -0.8066 1.1965 26 6 3.3085 -1.5080 0.6518 27 6 3.3081 -1.5079 -0.6534 28 6 2.0854 -0.8059 -1.1969 29 1 -0.3633 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 1.0880 1.9844 1.6650 33 1 1.9314 4.1389 0.0449 34 1 3.3101 3.6114 1.0397 35 1 -0.1944 5.0243 1.5007 36 1 0.0498 3.7413 4.1440 37 1 -0.1409 5.4881 3.8602 38 1 -2.1726 4.6104 5.3973 39 1 -4.6639 4.7019 7.6164 40 1 1.5045 6.5072 1.4472 41 1 2.4644 7.5386 3.5565 42 1 2.7409 5.8540 4.2545 43 1 4.2673 5.2967 2.3060 44 1 3.9913 6.9812 1.6075 45 1 2.3636 -0.1366 2.0101 46 1 1.3506 -1.5353 1.5376 47 1 4.0811 -1.9515 1.2624 48 1 4.0801 -1.9513 -1.2646 49 1 1.3495 -1.5342 -1.5378 50 1 2.3608 -0.1359 -2.0113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265369684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:59 Heat of formation + Delta-G solvation = -35.880608 kcal Electronic energy + Delta-G solvation = -29275.977041 eV Core-core repulsion = 25303.800501 eV Total energy + Delta-G solvation = -3972.176539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.57278 -39.01079 -37.94980 -37.43586 -35.13126 -34.14099 -33.55759 -31.91464 -31.24225 -29.29545 -28.26054 -26.22001 -25.61628 -24.27661 -23.28737 -22.58777 -21.78380 -20.70343 -19.37732 -19.07655 -18.98402 -17.91692 -17.06343 -16.53977 -16.04763 -15.71841 -15.55109 -15.31737 -14.92713 -14.61415 -14.33088 -14.19018 -14.07903 -13.68004 -13.30313 -13.06298 -12.92995 -12.79429 -12.44844 -12.35713 -12.28624 -12.16815 -11.96959 -11.73499 -11.54357 -11.52447 -11.39033 -11.29946 -11.26151 -11.04721 -10.75049 -10.64780 -10.46854 -10.25608 -10.18740 -9.66489 -9.52602 -9.04208 -8.87558 -8.54367 -8.11742 -7.99014 -6.44619 -3.85484 2.14921 2.74550 3.17713 3.21736 3.23820 3.27983 3.63422 3.87930 4.00743 4.24739 4.31277 4.48127 4.50738 4.71757 4.74646 4.83997 4.99613 5.05254 5.09570 5.11417 5.19813 5.24647 5.31814 5.37366 5.47697 5.49788 5.56591 5.63020 5.67416 5.72972 5.73564 5.76902 5.78819 5.86698 5.89968 5.94704 5.95385 5.99711 6.02842 6.17359 6.23558 6.39440 6.56959 6.75761 7.10009 7.52164 7.54009 7.68363 8.03005 8.35814 8.58241 9.15116 9.51390 10.02832 10.72989 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.002976 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.353906 B = 9406.475411 C =11559.015595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C 0.530 3.470 4 O -0.548 6.548 5 N -0.710 5.710 6 C 0.138 3.862 7 C 0.105 3.895 8 H 0.083 0.917 9 N -0.657 5.657 10 C 0.050 3.950 11 C 0.440 3.560 12 O -0.582 6.582 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.182 4.182 23 C -0.174 4.174 24 C -0.174 4.174 25 C -0.086 4.086 26 C -0.177 4.177 27 C -0.154 4.154 28 C -0.085 4.085 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.353 0.647 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.081 0.919 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.182 -5.561 -7.165 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C 0.315 3.685 4 O -0.426 6.426 5 N -0.361 5.361 6 C 0.013 3.987 7 C -0.006 4.006 8 H 0.101 0.899 9 N -0.288 5.288 10 C -0.082 4.082 11 C 0.226 3.774 12 O -0.466 6.466 13 N -0.200 5.200 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.203 4.203 23 C -0.211 4.211 24 C -0.212 4.212 25 C -0.124 4.124 26 C -0.195 4.195 27 C -0.171 4.171 28 C -0.122 4.122 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.245 0.755 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.099 0.901 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.209 -6.109 -8.273 19.197 hybrid contribution -0.758 0.986 1.200 1.728 sum 15.451 -5.124 -7.073 17.749 Atomic orbital electron populations 1.21795 0.91235 1.02857 1.03528 1.21611 0.97312 0.92335 0.97773 1.20188 0.80545 0.86645 0.81095 1.90647 1.36059 1.78625 1.37293 1.45770 1.48895 1.11756 1.29656 1.21212 0.97343 0.81745 0.98354 1.21460 0.89106 0.91694 0.98384 0.89867 1.60197 1.02547 1.56961 1.09102 1.21712 0.95115 1.00549 0.90855 1.19805 0.87773 0.84728 0.85133 1.90535 1.72671 1.53782 1.29589 1.41856 1.07487 1.62332 1.08338 1.19640 0.81742 1.45658 0.95889 0.87999 1.25251 1.00647 0.97256 0.94712 1.69600 1.36865 1.49005 0.98871 0.85934 0.82130 0.79115 0.77148 1.19865 1.20984 1.19926 1.23136 0.97099 0.97894 1.02139 1.23015 1.04013 1.01712 0.92400 1.22908 0.92551 1.03436 1.02304 1.21436 0.96072 0.98202 0.96651 1.23203 0.98498 1.01488 0.96301 1.23237 0.98201 0.99520 0.96183 1.21358 0.95380 0.97843 0.97623 0.91754 0.91454 0.91057 0.75472 0.91540 0.91514 0.82690 0.89830 0.93481 0.77522 0.91817 0.87432 0.88752 0.88643 0.88657 0.88819 0.90871 0.89460 0.85890 0.85926 0.90070 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.36 37.16 0.31 -1.16 16 2 C -0.09 -0.98 0.84 -153.95 -0.13 -1.11 16 3 C 0.53 7.24 6.51 -10.98 -0.07 7.17 16 4 O -0.55 -9.22 15.53 5.56 0.09 -9.14 16 5 N -0.71 -8.79 5.22 -60.29 -0.31 -9.11 16 6 C 0.14 1.63 5.18 -4.05 -0.02 1.61 16 7 C 0.10 1.15 2.34 -67.72 -0.16 0.99 16 8 H 0.08 0.88 7.51 -51.93 -0.39 0.49 16 9 N -0.66 -9.26 5.25 -108.00 -0.57 -9.83 16 10 C 0.05 0.80 5.99 -4.98 -0.03 0.77 16 11 C 0.44 9.77 7.83 -10.98 -0.09 9.68 16 12 O -0.58 -14.99 15.87 5.54 0.09 -14.90 16 13 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 14 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 15 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 18 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.18 -1.82 5.09 -90.62 -0.46 -2.29 16 23 C -0.17 -1.62 10.18 -26.69 -0.27 -1.89 16 24 C -0.17 -1.52 9.85 -26.69 -0.26 -1.78 16 25 C -0.09 -0.85 5.93 -26.82 -0.16 -1.01 16 26 C -0.18 -1.73 10.77 -35.70 -0.38 -2.12 16 27 C -0.15 -1.56 10.78 -35.70 -0.38 -1.94 16 28 C -0.08 -0.92 5.72 -26.84 -0.15 -1.07 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.07 0.82 7.46 -51.93 -0.39 0.44 16 32 H 0.41 4.96 7.42 -40.82 -0.30 4.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.77 7.68 -51.92 -0.40 0.37 16 35 H 0.35 5.37 8.20 -39.29 -0.32 5.05 16 36 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 37 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.39 9.13 7.90 -40.82 -0.32 8.80 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.11 1.13 7.96 -51.92 -0.41 0.71 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 46 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 50 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -31.41 410.64 -9.64 -41.05 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -8.26 Total: 19.06 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.50 Total: -1.92 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.22 Total: -55.99 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.41 -9.64 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265369684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.168 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds