Wall clock time and date at job start Tue Mar 31 2020 18:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.91174 * 2 1 4 4 O 1.21281 * 119.99711 * 236.02816 * 3 2 1 5 5 N 1.34782 * 120.00012 * 56.03273 * 3 2 1 6 6 C 1.46500 * 119.99903 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47147 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.47206 * 65.00464 * 7 6 5 9 9 N 1.46900 * 109.47179 * 304.99941 * 7 6 5 10 10 C 1.46899 * 110.99740 * 154.50117 * 9 7 6 11 11 C 1.50703 * 109.46982 * 184.07398 * 10 9 7 12 12 O 1.21299 * 119.99877 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00488 * 180.02562 * 11 10 9 14 14 C 1.37089 * 120.00347 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99991 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99992 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00059 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47150 * 59.99625 * 18 16 14 20 20 H 1.48497 * 109.47202 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46804 * 299.99965 * 18 16 14 22 22 C 1.52997 * 109.47116 * 184.99696 * 7 6 5 23 23 C 1.52994 * 117.50255 * 228.10653 * 22 7 6 24 24 C 1.53002 * 117.50232 * 296.77240 * 22 7 6 25 25 C 1.54638 * 111.06976 * 123.98641 * 2 1 3 26 26 C 1.51104 * 104.72021 * 142.68118 * 25 2 1 27 27 C 1.30528 * 111.10703 * 343.56197 * 26 25 2 28 28 C 1.51098 * 111.10264 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47041 * 60.70441 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.70275 * 1 2 3 31 31 H 1.09001 * 109.46921 * 300.70070 * 1 2 3 32 32 H 0.97001 * 119.99899 * 0.02562 * 5 3 2 33 33 H 1.09000 * 109.46852 * 59.99888 * 6 5 3 34 34 H 1.09011 * 109.46783 * 300.00306 * 6 5 3 35 35 H 1.00896 * 110.99724 * 278.45897 * 9 7 6 36 36 H 1.08995 * 109.47314 * 304.07242 * 10 9 7 37 37 H 1.09000 * 109.47174 * 64.08001 * 10 9 7 38 38 H 0.97007 * 119.99561 * 0.02562 * 13 11 10 39 39 H 0.96996 * 119.99943 * 179.97438 * 17 16 14 40 40 H 1.09010 * 115.54718 * 82.44034 * 22 7 6 41 41 H 1.08999 * 117.50440 * 215.00446 * 23 22 7 42 42 H 1.09006 * 117.49858 * 0.03162 * 23 22 7 43 43 H 1.08996 * 117.49293 * 359.97392 * 24 22 7 44 44 H 1.09000 * 117.49966 * 144.99639 * 24 22 7 45 45 H 1.08996 * 110.39205 * 261.49148 * 25 2 1 46 46 H 1.08999 * 110.38570 * 23.87652 * 25 2 1 47 47 H 1.08001 * 124.44853 * 163.58852 * 26 25 2 48 48 H 1.07995 * 124.44824 * 180.02562 * 27 26 25 49 49 H 1.09003 * 110.38690 * 257.62040 * 28 27 26 50 50 H 1.08997 * 110.48251 * 135.29420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.8326 1.7647 -0.8711 5 7 1.6993 2.2700 0.9681 6 6 2.2226 3.6384 0.9684 7 6 1.6522 4.4023 2.1649 8 1 2.0166 3.9541 3.0894 9 7 0.1850 4.3364 2.1337 10 6 -0.3777 4.4938 3.4815 11 6 -1.8737 4.3213 3.4245 12 8 -2.4177 4.0903 2.3652 13 7 -2.6075 4.4246 4.5503 14 6 -3.9683 4.2671 4.4985 15 1 -4.4525 4.0606 3.5554 16 6 -4.7248 4.3741 5.6591 17 7 -4.1358 4.6268 6.8063 18 14 -6.5790 4.1588 5.5887 19 1 -6.9008 2.8034 5.0744 20 1 -7.1480 4.3189 6.9509 21 1 -7.1621 5.1825 4.6846 22 6 2.0987 5.8641 2.0966 23 6 2.6776 6.4862 3.3688 24 6 3.5986 6.1500 2.1932 25 6 2.0860 -0.8066 1.1965 26 6 3.3085 -1.5080 0.6518 27 6 3.3081 -1.5079 -0.6534 28 6 2.0854 -0.8059 -1.1969 29 1 -0.3633 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 1.0880 1.9844 1.6650 33 1 1.9314 4.1389 0.0449 34 1 3.3101 3.6114 1.0397 35 1 -0.1944 5.0243 1.5007 36 1 0.0498 3.7413 4.1440 37 1 -0.1409 5.4881 3.8602 38 1 -2.1726 4.6104 5.3973 39 1 -4.6639 4.7019 7.6164 40 1 1.5045 6.5072 1.4472 41 1 2.4644 7.5386 3.5565 42 1 2.7409 5.8540 4.2545 43 1 4.2673 5.2967 2.3060 44 1 3.9913 6.9812 1.6075 45 1 2.3636 -0.1366 2.0101 46 1 1.3506 -1.5353 1.5376 47 1 4.0811 -1.9515 1.2624 48 1 4.0801 -1.9513 -1.2646 49 1 1.3495 -1.5342 -1.5378 50 1 2.3608 -0.1359 -2.0113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265369684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:57 Heat of formation + Delta-G solvation = -56.806309 kcal Electronic energy + Delta-G solvation = -29276.884447 eV Core-core repulsion = 25303.800501 eV Total energy + Delta-G solvation = -3973.083946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.55029 -40.28715 -39.35938 -38.39763 -36.22014 -35.85508 -34.87571 -33.22059 -32.77613 -30.40770 -29.08629 -27.75011 -26.50573 -25.77597 -24.38602 -23.33759 -22.67409 -21.64138 -21.02175 -20.13199 -19.84421 -19.77613 -18.06559 -17.75723 -17.22131 -16.84115 -16.74658 -16.38725 -16.32391 -15.93868 -15.77678 -15.43277 -15.24496 -14.83813 -14.67717 -14.03269 -13.97826 -13.80176 -13.62692 -13.52158 -13.43077 -13.15483 -13.10744 -13.02011 -12.93641 -12.69227 -12.43034 -12.40162 -12.24217 -12.15296 -12.11982 -12.06454 -11.61438 -11.46798 -11.40810 -11.02519 -10.72373 -10.29605 -9.99209 -9.97370 -9.76716 -9.32844 -8.43861 -5.91758 1.39348 1.41066 1.43264 1.53363 1.68045 2.10859 2.24432 2.30834 2.83615 2.92182 3.24163 3.46541 3.54660 3.65368 3.68700 3.84926 3.93275 4.06643 4.12545 4.15937 4.33012 4.36771 4.37799 4.46536 4.50384 4.57803 4.62265 4.68760 4.72856 4.77633 4.83022 4.84331 4.89071 4.92639 5.02259 5.04452 5.05709 5.15942 5.20706 5.27330 5.28864 5.43784 5.52931 5.64329 5.89592 6.00952 6.10893 6.34296 6.63768 6.64486 7.16681 7.30498 7.61480 8.17080 8.73229 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.002976 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.353906 B = 9406.475411 C =11559.015595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C 0.524 3.476 4 O -0.585 6.585 5 N -0.704 5.704 6 C 0.141 3.859 7 C 0.118 3.882 8 H 0.097 0.903 9 N -0.665 5.665 10 C 0.068 3.932 11 C 0.440 3.560 12 O -0.620 6.620 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.078 0.922 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.988 3.012 19 H -0.272 1.272 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.194 4.194 23 C -0.173 4.173 24 C -0.164 4.164 25 C -0.085 4.085 26 C -0.177 4.177 27 C -0.167 4.167 28 C -0.086 4.086 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.345 0.655 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.141 0.859 48 H 0.135 0.865 49 H 0.096 0.904 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -6.123 -6.005 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C 0.311 3.689 4 O -0.465 6.465 5 N -0.354 5.354 6 C 0.016 3.984 7 C 0.008 3.992 8 H 0.115 0.885 9 N -0.296 5.296 10 C -0.064 4.064 11 C 0.228 3.772 12 O -0.507 6.507 13 N -0.212 5.212 14 C -0.461 4.461 15 H 0.096 0.904 16 C -0.211 4.211 17 N -0.562 5.562 18 Si 0.812 3.188 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.214 4.214 23 C -0.209 4.209 24 C -0.201 4.201 25 C -0.122 4.122 26 C -0.195 4.195 27 C -0.185 4.185 28 C -0.123 4.123 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.114 0.886 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.061 -6.665 -7.083 19.638 hybrid contribution -0.966 1.186 0.778 1.716 sum 16.095 -5.478 -6.305 18.133 Atomic orbital electron populations 1.21767 0.90957 1.03814 1.02451 1.21626 0.97376 0.91069 0.98939 1.20666 0.79993 0.87662 0.80574 1.90625 1.37831 1.79461 1.38626 1.45795 1.48469 1.11863 1.29315 1.21217 0.97738 0.81403 0.98018 1.21371 0.86926 0.92504 0.98449 0.88517 1.60155 1.04428 1.56993 1.08005 1.21539 0.90291 1.02296 0.92287 1.20891 0.90276 0.82270 0.83793 1.90510 1.74305 1.54912 1.30930 1.41917 1.06875 1.63188 1.09179 1.19594 0.83442 1.47573 0.95451 0.90393 1.25964 1.04513 0.96512 0.94152 1.69658 1.38246 1.49050 0.99217 0.85058 0.77263 0.78896 0.77566 1.19679 1.19664 1.19902 1.23011 0.98303 0.96949 1.03157 1.23084 1.03638 1.01905 0.92322 1.22972 0.91607 1.03818 1.01737 1.21475 0.96544 0.98320 0.95900 1.23419 0.98698 1.01037 0.96343 1.23381 0.98376 1.00045 0.96690 1.21366 0.96348 0.97771 0.96833 0.92937 0.89489 0.91972 0.75163 0.93174 0.90775 0.83547 0.87472 0.91641 0.77043 0.91398 0.88139 0.88520 0.88054 0.87956 0.88102 0.90668 0.87964 0.84145 0.84718 0.88586 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.36 71.98 0.60 -2.18 16 2 C -0.09 -1.90 0.84 -51.82 -0.04 -1.94 16 3 C 0.52 14.30 6.51 87.66 0.57 14.88 16 4 O -0.58 -20.00 15.53 -3.03 -0.05 -20.04 16 5 N -0.70 -17.09 5.22 -463.05 -2.42 -19.51 16 6 C 0.14 3.22 5.18 86.38 0.45 3.67 16 7 C 0.12 2.41 2.34 44.91 0.11 2.51 16 8 H 0.10 1.77 7.51 -2.38 -0.02 1.75 16 9 N -0.66 -18.13 5.25 -495.59 -2.60 -20.73 16 10 C 0.07 2.06 5.99 85.56 0.51 2.57 16 11 C 0.44 19.51 7.83 87.66 0.69 20.20 16 12 O -0.62 -32.53 15.87 -3.09 -0.05 -32.57 16 13 N -0.57 -28.05 5.29 -306.98 -1.62 -29.67 16 14 C -0.33 -18.23 9.68 84.04 0.81 -17.42 16 15 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 16 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 17 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 18 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C -0.19 -3.57 5.09 -10.80 -0.05 -3.62 16 23 C -0.17 -2.80 10.18 30.62 0.31 -2.48 16 24 C -0.16 -2.49 9.85 30.62 0.30 -2.19 16 25 C -0.09 -1.53 5.93 30.53 0.18 -1.35 16 26 C -0.18 -3.14 10.77 26.26 0.28 -2.85 16 27 C -0.17 -3.20 10.78 26.26 0.28 -2.92 16 28 C -0.09 -1.82 5.72 30.52 0.17 -1.65 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.06 1.41 7.46 -2.39 -0.02 1.39 16 32 H 0.41 9.61 7.42 -92.71 -0.69 8.93 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.62 7.68 -2.38 -0.02 1.60 16 35 H 0.35 10.46 8.20 -89.70 -0.74 9.72 16 36 H 0.11 2.79 7.95 -2.39 -0.02 2.77 16 37 H 0.07 1.78 8.10 -2.39 -0.02 1.77 16 38 H 0.40 18.37 7.90 -92.70 -0.73 17.63 16 39 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.10 2.02 7.96 -2.38 -0.02 2.00 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.54 8.07 -2.38 -0.02 1.52 16 43 H 0.10 1.44 7.87 -2.39 -0.02 1.42 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.32 7.85 -2.39 -0.02 1.30 16 46 H 0.10 1.54 7.88 -2.39 -0.02 1.52 16 47 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 49 H 0.10 1.69 7.89 -2.39 -0.02 1.67 16 50 H 0.07 1.68 7.01 -2.39 -0.02 1.66 16 Total: -1.00 -68.31 410.64 0.02 -68.29 By element: Atomic # 1 Polarization: 54.47 SS G_CDS: -1.19 Total: 53.28 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.64 Total: 5.08 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.36 Total: -118.15 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.10 Total: -52.62 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -68.31 0.02 -68.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265369684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.481 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds