Wall clock time and date at job start Tue Mar 31 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.63852 * 2 1 4 4 O 1.21279 * 120.00077 * 122.99922 * 3 2 1 5 5 N 1.34771 * 120.00021 * 302.99781 * 3 2 1 6 6 C 1.47027 * 125.65048 * 5.12786 * 5 3 2 7 7 C 1.54329 * 107.26803 * 178.84914 * 6 5 3 8 8 C 1.55151 * 103.02311 * 338.14578 * 7 6 5 9 9 H 1.09002 * 111.00512 * 277.23384 * 8 7 6 10 10 N 1.46901 * 111.04129 * 153.39429 * 8 7 6 11 11 C 1.46900 * 111.00150 * 92.78266 * 10 8 7 12 12 C 1.50691 * 109.47277 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00405 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99976 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99638 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00357 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99665 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99665 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46924 * 60.00593 * 19 17 15 21 21 H 1.48501 * 109.46621 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47198 * 300.00042 * 19 17 15 23 23 C 1.47425 * 125.65013 * 185.43709 * 5 3 2 24 24 C 1.53024 * 109.64316 * 120.41811 * 2 1 3 25 25 C 1.50064 * 110.14665 * 169.12177 * 24 2 1 26 26 C 1.29447 * 124.07565 * 342.86499 * 25 24 2 27 27 C 1.50063 * 124.07348 * 0.47835 * 26 25 24 28 28 C 1.53018 * 110.14965 * 342.86067 * 27 26 25 29 29 H 1.08996 * 109.46873 * 314.93198 * 1 2 3 30 30 H 1.08994 * 109.47044 * 74.93048 * 1 2 3 31 31 H 1.09003 * 109.46678 * 194.93394 * 1 2 3 32 32 H 1.09001 * 109.88164 * 298.39775 * 6 5 3 33 33 H 1.08997 * 109.88127 * 59.55912 * 6 5 3 34 34 H 1.08996 * 110.85181 * 219.67263 * 7 6 5 35 35 H 1.09002 * 110.66744 * 96.52330 * 7 6 5 36 36 H 1.00899 * 110.99645 * 328.83071 * 10 8 7 37 37 H 1.08998 * 109.46876 * 300.00574 * 11 10 8 38 38 H 1.09007 * 109.46889 * 60.00073 * 11 10 8 39 39 H 0.96993 * 119.99985 * 359.97438 * 14 12 11 40 40 H 0.97001 * 119.99416 * 180.02562 * 18 17 15 41 41 H 1.08994 * 110.36978 * 322.93406 * 23 5 3 42 42 H 1.09005 * 110.36806 * 85.14347 * 23 5 3 43 43 H 1.09003 * 109.35700 * 48.91622 * 24 2 1 44 44 H 1.08999 * 109.24705 * 289.25712 * 24 2 1 45 45 H 1.07999 * 117.96323 * 162.85288 * 25 24 2 46 46 H 1.07997 * 117.96141 * 180.18887 * 26 25 24 47 47 H 1.08997 * 109.35968 * 103.07182 * 27 26 25 48 48 H 1.09002 * 109.35530 * 222.65164 * 27 26 25 49 49 H 1.09002 * 109.64183 * 289.75738 * 28 27 26 50 50 H 1.09004 * 109.64318 * 169.12569 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.7791 1.7982 0.8809 5 7 1.6643 2.2676 -0.9789 6 6 0.6918 1.9754 -2.0421 7 6 0.5653 3.2460 -2.9090 8 6 1.0560 4.3688 -1.9574 9 1 0.2554 4.6967 -1.2944 10 7 1.6044 5.5009 -2.7161 11 6 0.5717 6.5143 -2.9698 12 6 1.1699 7.6571 -3.7488 13 8 2.3413 7.6299 -4.0624 14 7 0.4033 8.7095 -4.0972 15 6 0.9476 9.7490 -4.8065 16 1 1.9905 9.7247 -5.0857 17 6 0.1571 10.8338 -5.1661 18 7 -1.1119 10.8635 -4.8259 19 14 0.8987 12.2503 -6.1318 20 1 1.4251 11.7456 -7.4254 21 1 -0.1455 13.2745 -6.3888 22 1 2.0058 12.8567 -5.3497 23 6 2.1697 3.6400 -1.1647 24 6 2.0445 -0.7297 1.2428 25 6 3.5212 -0.9699 1.1269 26 6 4.1818 -0.9035 0.0157 27 6 3.5650 -0.5668 -1.3103 28 6 2.0457 -0.7361 -1.2430 29 1 -0.3633 0.7258 0.7275 30 1 -0.3633 0.2672 -0.9923 31 1 -0.3633 -0.9930 0.2648 32 1 1.0463 1.1432 -2.6502 33 1 -0.2753 1.7308 -1.6029 34 1 -0.4711 3.4142 -3.2019 35 1 1.2066 3.1776 -3.7877 36 1 2.0241 5.1885 -3.5788 37 1 -0.2407 6.0693 -3.5442 38 1 0.1849 6.8845 -2.0202 39 1 -0.5335 8.7312 -3.8468 40 1 -1.6637 11.6205 -5.0773 41 1 2.3249 4.1212 -0.1991 42 1 3.0983 3.6284 -1.7355 43 1 1.5294 -1.6855 1.3397 44 1 1.8456 -0.1210 2.1249 45 1 4.0668 -1.2133 2.0266 46 1 5.2437 -1.0981 0.0454 47 1 3.8025 0.4654 -1.5676 48 1 3.9689 -1.2298 -2.0754 49 1 1.7979 -1.7952 -1.1708 50 1 1.5896 -0.3101 -2.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265432549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:45 Heat of formation + Delta-G solvation = -49.537633 kcal Electronic energy + Delta-G solvation = -29300.696046 eV Core-core repulsion = 25327.927294 eV Total energy + Delta-G solvation = -3972.768752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19490 -38.91140 -38.05345 -37.06839 -34.89413 -33.86939 -33.22898 -31.31809 -31.16981 -30.49481 -28.94761 -27.00070 -26.25771 -24.52530 -23.69118 -23.44069 -21.91620 -20.98336 -19.80149 -19.30313 -18.10673 -17.90055 -16.71934 -16.50300 -16.26161 -15.95768 -15.48775 -15.10133 -14.95469 -14.53221 -14.28823 -14.07903 -13.89168 -13.72212 -13.60238 -13.38050 -13.19751 -13.06500 -12.86685 -12.58071 -12.49483 -12.43871 -12.31864 -12.24480 -11.80926 -11.70810 -11.58033 -11.46705 -11.33769 -11.03085 -10.89675 -10.73527 -10.45464 -10.40598 -10.23065 -9.77478 -9.51958 -9.14508 -8.75376 -8.49352 -8.11548 -7.98284 -6.43563 -3.84425 2.16906 2.53047 2.77102 3.19163 3.25013 3.29509 3.87684 4.00851 4.07977 4.17416 4.22871 4.34225 4.45811 4.51610 4.68262 4.77854 4.86407 4.98153 5.00510 5.05653 5.10186 5.13617 5.18084 5.23832 5.25148 5.32399 5.37771 5.39699 5.49255 5.55835 5.57062 5.71026 5.72746 5.74578 5.75637 5.81235 5.90054 5.90924 5.91631 5.95686 6.13383 6.25044 6.44803 6.78825 7.12054 7.38691 7.53451 7.56105 8.03904 8.06662 8.58880 9.15820 9.51777 10.03073 10.74015 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.001923 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.025471 B =14560.510901 C =14814.150254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C 0.543 3.457 4 O -0.531 6.531 5 N -0.618 5.618 6 C 0.094 3.906 7 C -0.167 4.167 8 C 0.079 3.921 9 H 0.092 0.908 10 N -0.656 5.656 11 C 0.052 3.948 12 C 0.439 3.561 13 O -0.583 6.583 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.116 3.884 24 C -0.067 4.067 25 C -0.137 4.137 26 C -0.162 4.162 27 C -0.094 4.094 28 C -0.110 4.110 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.353 0.647 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -26.424 7.866 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 C 0.331 3.669 4 O -0.406 6.406 5 N -0.353 5.353 6 C -0.029 4.029 7 C -0.207 4.207 8 C -0.033 4.033 9 H 0.110 0.890 10 N -0.288 5.288 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.467 6.467 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.007 4.007 24 C -0.104 4.104 25 C -0.155 4.155 26 C -0.180 4.180 27 C -0.131 4.131 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.097 -25.785 8.711 27.217 hybrid contribution -0.799 0.399 -1.042 1.372 sum -0.702 -25.386 7.669 26.528 Atomic orbital electron populations 1.22112 0.92593 1.03022 1.03201 1.20857 0.96851 0.92207 0.98125 1.20033 0.80384 0.86351 0.80114 1.90710 1.36478 1.77592 1.35843 1.48389 1.43556 1.14973 1.28345 1.22378 0.93022 0.98249 0.89234 1.23463 1.03164 0.95208 0.98877 1.22725 0.95813 0.89434 0.95310 0.88963 1.59896 1.30977 1.10912 1.26997 1.21701 0.92929 0.93010 1.00384 1.19781 0.87535 0.84813 0.85389 1.90532 1.16590 1.80460 1.59145 1.41853 1.11987 1.17087 1.48999 1.19657 0.97209 0.96232 1.29863 0.87952 1.25271 0.95346 0.99111 0.98214 1.69603 1.05633 1.32315 1.46741 0.85908 0.78348 0.80054 0.79863 1.19914 1.20980 1.19850 1.22145 0.96906 0.80492 1.01121 1.20354 0.93690 0.99577 0.96787 1.21853 0.95828 1.00189 0.97654 1.21890 0.99491 1.02097 0.94495 1.20464 0.94675 1.01943 0.96054 1.21794 0.95866 1.00746 0.96355 0.91991 0.90912 0.91314 0.90993 0.90577 0.89814 0.90108 0.82580 0.93664 0.89474 0.77453 0.91804 0.89944 0.90839 0.90241 0.90167 0.87960 0.88135 0.91028 0.90781 0.90495 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 7.81 37.16 0.29 -0.66 16 2 C -0.08 -0.65 0.50 -155.44 -0.08 -0.73 16 3 C 0.54 6.41 4.85 -10.99 -0.05 6.36 16 4 O -0.53 -8.38 15.34 5.56 0.09 -8.29 16 5 N -0.62 -6.56 3.32 -170.52 -0.57 -7.13 16 6 C 0.09 0.72 5.17 -3.06 -0.02 0.71 16 7 C -0.17 -1.45 6.55 -24.90 -0.16 -1.61 16 8 C 0.08 0.91 3.38 -65.57 -0.22 0.69 16 9 H 0.09 1.04 7.83 -51.93 -0.41 0.63 16 10 N -0.66 -9.96 6.04 -105.73 -0.64 -10.60 16 11 C 0.05 0.87 6.03 -4.98 -0.03 0.84 16 12 C 0.44 10.14 7.82 -10.99 -0.09 10.06 16 13 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 14 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 19 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.12 1.44 6.63 -2.53 -0.02 1.42 16 24 C -0.07 -0.57 4.54 -28.18 -0.13 -0.70 16 25 C -0.14 -1.32 8.88 -35.90 -0.32 -1.63 16 26 C -0.16 -1.55 9.57 -35.90 -0.34 -1.90 16 27 C -0.09 -0.81 5.59 -28.18 -0.16 -0.97 16 28 C -0.11 -0.78 4.72 -26.52 -0.13 -0.91 16 29 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.07 0.38 4.97 -51.93 -0.26 0.12 16 31 H 0.07 0.33 7.91 -51.93 -0.41 -0.08 16 32 H 0.07 0.46 5.60 -51.93 -0.29 0.17 16 33 H 0.08 0.48 5.69 -51.93 -0.30 0.19 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.35 5.49 7.89 -39.29 -0.31 5.18 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.16 7.99 -51.93 -0.41 0.75 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.51 7.94 -51.93 -0.41 0.10 16 44 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 45 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 50 H 0.08 0.46 5.17 -51.93 -0.27 0.19 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -33.05 387.17 -9.13 -42.18 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -7.89 Total: 12.27 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.69 Total: 3.02 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.54 Total: -55.39 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.05 -9.13 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265432549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.353 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds