Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.63852 * 2 1 4 4 O 1.21279 * 120.00077 * 122.99922 * 3 2 1 5 5 N 1.34771 * 120.00021 * 302.99781 * 3 2 1 6 6 C 1.47027 * 125.65048 * 5.12786 * 5 3 2 7 7 C 1.54329 * 107.26803 * 178.84914 * 6 5 3 8 8 C 1.55151 * 103.02311 * 338.14578 * 7 6 5 9 9 H 1.09002 * 111.00512 * 277.23384 * 8 7 6 10 10 N 1.46901 * 111.04129 * 153.39429 * 8 7 6 11 11 C 1.46900 * 111.00150 * 92.78266 * 10 8 7 12 12 C 1.50691 * 109.47277 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00405 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99976 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99638 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00357 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99665 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99665 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46924 * 60.00593 * 19 17 15 21 21 H 1.48501 * 109.46621 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47198 * 300.00042 * 19 17 15 23 23 C 1.47425 * 125.65013 * 185.43709 * 5 3 2 24 24 C 1.53024 * 109.64316 * 120.41811 * 2 1 3 25 25 C 1.50064 * 110.14665 * 169.12177 * 24 2 1 26 26 C 1.29447 * 124.07565 * 342.86499 * 25 24 2 27 27 C 1.50063 * 124.07348 * 0.47835 * 26 25 24 28 28 C 1.53018 * 110.14965 * 342.86067 * 27 26 25 29 29 H 1.08996 * 109.46873 * 314.93198 * 1 2 3 30 30 H 1.08994 * 109.47044 * 74.93048 * 1 2 3 31 31 H 1.09003 * 109.46678 * 194.93394 * 1 2 3 32 32 H 1.09001 * 109.88164 * 298.39775 * 6 5 3 33 33 H 1.08997 * 109.88127 * 59.55912 * 6 5 3 34 34 H 1.08996 * 110.85181 * 219.67263 * 7 6 5 35 35 H 1.09002 * 110.66744 * 96.52330 * 7 6 5 36 36 H 1.00899 * 110.99645 * 328.83071 * 10 8 7 37 37 H 1.08998 * 109.46876 * 300.00574 * 11 10 8 38 38 H 1.09007 * 109.46889 * 60.00073 * 11 10 8 39 39 H 0.96993 * 119.99985 * 359.97438 * 14 12 11 40 40 H 0.97001 * 119.99416 * 180.02562 * 18 17 15 41 41 H 1.08994 * 110.36978 * 322.93406 * 23 5 3 42 42 H 1.09005 * 110.36806 * 85.14347 * 23 5 3 43 43 H 1.09003 * 109.35700 * 48.91622 * 24 2 1 44 44 H 1.08999 * 109.24705 * 289.25712 * 24 2 1 45 45 H 1.07999 * 117.96323 * 162.85288 * 25 24 2 46 46 H 1.07997 * 117.96141 * 180.18887 * 26 25 24 47 47 H 1.08997 * 109.35968 * 103.07182 * 27 26 25 48 48 H 1.09002 * 109.35530 * 222.65164 * 27 26 25 49 49 H 1.09002 * 109.64183 * 289.75738 * 28 27 26 50 50 H 1.09004 * 109.64318 * 169.12569 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.7791 1.7982 0.8809 5 7 1.6643 2.2676 -0.9789 6 6 0.6918 1.9754 -2.0421 7 6 0.5653 3.2460 -2.9090 8 6 1.0560 4.3688 -1.9574 9 1 0.2554 4.6967 -1.2944 10 7 1.6044 5.5009 -2.7161 11 6 0.5717 6.5143 -2.9698 12 6 1.1699 7.6571 -3.7488 13 8 2.3413 7.6299 -4.0624 14 7 0.4033 8.7095 -4.0972 15 6 0.9476 9.7490 -4.8065 16 1 1.9905 9.7247 -5.0857 17 6 0.1571 10.8338 -5.1661 18 7 -1.1119 10.8635 -4.8259 19 14 0.8987 12.2503 -6.1318 20 1 1.4251 11.7456 -7.4254 21 1 -0.1455 13.2745 -6.3888 22 1 2.0058 12.8567 -5.3497 23 6 2.1697 3.6400 -1.1647 24 6 2.0445 -0.7297 1.2428 25 6 3.5212 -0.9699 1.1269 26 6 4.1818 -0.9035 0.0157 27 6 3.5650 -0.5668 -1.3103 28 6 2.0457 -0.7361 -1.2430 29 1 -0.3633 0.7258 0.7275 30 1 -0.3633 0.2672 -0.9923 31 1 -0.3633 -0.9930 0.2648 32 1 1.0463 1.1432 -2.6502 33 1 -0.2753 1.7308 -1.6029 34 1 -0.4711 3.4142 -3.2019 35 1 1.2066 3.1776 -3.7877 36 1 2.0241 5.1885 -3.5788 37 1 -0.2407 6.0693 -3.5442 38 1 0.1849 6.8845 -2.0202 39 1 -0.5335 8.7312 -3.8468 40 1 -1.6637 11.6205 -5.0773 41 1 2.3249 4.1212 -0.1991 42 1 3.0983 3.6284 -1.7355 43 1 1.5294 -1.6855 1.3397 44 1 1.8456 -0.1210 2.1249 45 1 4.0668 -1.2133 2.0266 46 1 5.2437 -1.0981 0.0454 47 1 3.8025 0.4654 -1.5676 48 1 3.9689 -1.2298 -2.0754 49 1 1.7979 -1.7952 -1.1708 50 1 1.5896 -0.3101 -2.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265432549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = -72.977787 kcal Electronic energy + Delta-G solvation = -29301.712488 eV Core-core repulsion = 25327.927294 eV Total energy + Delta-G solvation = -3973.785194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98335 -40.25984 -39.37115 -37.99892 -36.23971 -35.62738 -33.97432 -33.25922 -31.93591 -31.36326 -29.92925 -27.87731 -27.49554 -25.91314 -24.82125 -24.11355 -22.61144 -21.92660 -21.10799 -20.56576 -19.92095 -18.86590 -17.84427 -17.45417 -17.25027 -17.03087 -16.79021 -16.34134 -16.12731 -15.84156 -15.57424 -15.31486 -14.86796 -14.70674 -14.57014 -14.23479 -14.17861 -14.01779 -13.88864 -13.59648 -13.49708 -13.33067 -13.21365 -13.10634 -13.00206 -12.97558 -12.79866 -12.48273 -12.43125 -12.39645 -12.19397 -12.11568 -11.64695 -11.49989 -11.34851 -11.03518 -10.67204 -10.35575 -10.01280 -9.86667 -9.61359 -9.30100 -8.46365 -5.94863 1.40033 1.42210 1.44021 1.52792 1.66116 1.91517 2.05873 2.29946 2.91981 3.20997 3.33843 3.45647 3.56343 3.67491 3.73007 3.81192 4.00474 4.11607 4.16093 4.26814 4.29769 4.35963 4.38462 4.40526 4.50569 4.52232 4.57609 4.61736 4.71354 4.79121 4.80383 4.84816 4.88924 4.92322 4.96021 5.03122 5.10313 5.12162 5.20427 5.24512 5.31458 5.35648 5.41369 5.74008 5.88631 6.07960 6.09162 6.36960 6.55625 6.60657 7.13073 7.18563 7.56845 8.12353 8.70621 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.001923 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.025471 B =14560.510901 C =14814.150254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C 0.536 3.464 4 O -0.583 6.583 5 N -0.615 5.615 6 C 0.092 3.908 7 C -0.158 4.158 8 C 0.084 3.916 9 H 0.100 0.900 10 N -0.675 5.675 11 C 0.069 3.931 12 C 0.436 3.564 13 O -0.625 6.625 14 N -0.572 5.572 15 C -0.334 4.334 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.919 5.919 19 Si 0.992 3.008 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.117 3.883 24 C -0.068 4.068 25 C -0.148 4.148 26 C -0.176 4.176 27 C -0.096 4.096 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.350 0.650 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.047 0.953 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 -28.254 6.922 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C 0.326 3.674 4 O -0.462 6.462 5 N -0.349 5.349 6 C -0.029 4.029 7 C -0.197 4.197 8 C -0.027 4.027 9 H 0.118 0.882 10 N -0.307 5.307 11 C -0.063 4.063 12 C 0.224 3.776 13 O -0.512 6.512 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.200 1.200 23 C -0.007 4.007 24 C -0.106 4.106 25 C -0.166 4.166 26 C -0.194 4.194 27 C -0.133 4.133 28 C -0.142 4.142 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.117 0.883 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.277 -27.640 7.758 28.798 hybrid contribution 0.009 0.942 -0.683 1.163 sum -2.268 -26.698 7.075 27.713 Atomic orbital electron populations 1.22131 0.90385 1.04171 1.03933 1.20903 0.98462 0.89532 0.98696 1.20810 0.79541 0.87711 0.79345 1.90682 1.38872 1.78723 1.37939 1.48449 1.43697 1.13926 1.28803 1.22634 0.93345 0.98434 0.88511 1.23414 1.04215 0.93952 0.98138 1.22663 0.95335 0.89130 0.95576 0.88177 1.59807 1.31442 1.12318 1.27142 1.21537 0.93386 0.91059 1.00297 1.20918 0.86932 0.85466 0.84303 1.90502 1.18648 1.81464 1.60564 1.41918 1.12350 1.17327 1.49365 1.19614 0.96646 0.98183 1.31954 0.90422 1.26024 0.95736 1.00869 0.98630 1.69659 1.06266 1.33072 1.46958 0.85006 0.77818 0.77222 0.78408 1.19604 1.19465 1.19953 1.21955 0.97095 0.81959 0.99652 1.20417 0.93194 1.00604 0.96338 1.22057 0.96827 1.00042 0.97651 1.22069 0.99658 1.02385 0.95288 1.20490 0.96291 1.00722 0.95782 1.21838 0.94334 1.01957 0.96107 0.93094 0.89255 0.89077 0.88915 0.88218 0.87689 0.90139 0.82993 0.90465 0.87954 0.76869 0.91284 0.92599 0.92361 0.87433 0.91948 0.88110 0.88368 0.93490 0.89193 0.88279 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.81 71.98 0.56 -0.77 16 2 C -0.07 -1.07 0.50 -52.79 -0.03 -1.10 16 3 C 0.54 12.49 4.85 87.66 0.42 12.91 16 4 O -0.58 -19.28 15.34 -3.03 -0.05 -19.33 16 5 N -0.62 -12.47 3.32 -811.79 -2.70 -15.16 16 6 C 0.09 1.11 5.17 86.73 0.45 1.56 16 7 C -0.16 -2.24 6.55 31.78 0.21 -2.03 16 8 C 0.08 1.81 3.38 46.30 0.16 1.96 16 9 H 0.10 2.03 7.83 -2.39 -0.02 2.01 16 10 N -0.68 -20.04 6.04 -488.42 -2.95 -22.99 16 11 C 0.07 2.21 6.03 85.55 0.52 2.73 16 12 C 0.44 20.26 7.82 87.65 0.69 20.95 16 13 O -0.63 -34.36 15.78 -3.07 -0.05 -34.41 16 14 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 15 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 16 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 18 N -0.92 -48.98 13.05 21.67 0.28 -48.70 16 19 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.12 2.95 6.63 86.86 0.58 3.53 16 24 C -0.07 -1.10 4.54 29.66 0.13 -0.96 16 25 C -0.15 -2.82 8.88 27.03 0.24 -2.58 16 26 C -0.18 -3.37 9.57 27.03 0.26 -3.11 16 27 C -0.10 -1.55 5.59 29.65 0.17 -1.38 16 28 C -0.11 -1.17 4.72 30.73 0.14 -1.03 16 29 H 0.05 0.59 8.05 -2.39 -0.02 0.57 16 30 H 0.09 0.49 4.97 -2.39 -0.01 0.48 16 31 H 0.09 0.45 7.91 -2.39 -0.02 0.43 16 32 H 0.09 0.79 5.60 -2.39 -0.01 0.78 16 33 H 0.10 0.80 5.69 -2.39 -0.01 0.79 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 36 H 0.35 10.75 7.89 -89.69 -0.71 10.05 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 3.00 8.09 -2.38 -0.02 2.98 16 39 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 42 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.11 1.08 7.94 -2.39 -0.02 1.06 16 44 H 0.06 1.22 7.80 -2.39 -0.02 1.21 16 45 H 0.10 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.10 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.05 0.99 7.42 -2.39 -0.02 0.97 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 50 H 0.09 0.73 5.17 -2.39 -0.01 0.71 16 Total: -1.00 -75.30 387.17 0.25 -75.05 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.47 Total: 38.83 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.78 Total: 12.43 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -6.98 Total: -117.31 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.09 Total: -53.74 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -75.30 0.25 -75.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265432549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.074 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds