Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 110.34546 * 2 1 4 4 O 1.21285 * 120.00015 * 122.28878 * 3 2 1 5 5 N 1.34772 * 120.00158 * 302.28796 * 3 2 1 6 6 C 1.46504 * 120.00206 * 180.27374 * 5 3 2 7 7 C 1.53002 * 109.46931 * 179.72157 * 6 5 3 8 8 H 1.09007 * 109.47042 * 65.00661 * 7 6 5 9 9 N 1.46896 * 109.47567 * 305.00577 * 7 6 5 10 10 C 1.46912 * 110.99603 * 301.49342 * 9 7 6 11 11 C 1.50697 * 109.46677 * 185.06192 * 10 9 7 12 12 O 1.21287 * 120.00380 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99714 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99956 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00178 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99661 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99709 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00346 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46839 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.47023 * 209.99759 * 18 16 14 21 21 H 1.48493 * 109.46824 * 329.99953 * 18 16 14 22 22 C 1.53003 * 109.46795 * 185.00190 * 7 6 5 23 23 C 1.53001 * 117.49517 * 253.77027 * 22 7 6 24 24 C 1.53005 * 117.49768 * 185.11115 * 22 7 6 25 25 C 1.51097 * 110.48343 * 237.64539 * 2 1 3 26 26 C 1.30526 * 111.10652 * 257.58032 * 25 2 1 27 27 C 1.51100 * 111.10413 * 359.97438 * 26 25 2 28 28 C 1.54630 * 110.38596 * 122.28701 * 2 1 3 29 29 H 1.08996 * 109.47000 * 59.30012 * 1 2 3 30 30 H 1.09004 * 109.47018 * 179.29926 * 1 2 3 31 31 H 1.09005 * 109.46859 * 299.30052 * 1 2 3 32 32 H 0.97000 * 119.99822 * 359.97438 * 5 3 2 33 33 H 1.08991 * 109.47217 * 299.72336 * 6 5 3 34 34 H 1.08999 * 109.46861 * 59.73033 * 6 5 3 35 35 H 1.00890 * 111.00424 * 65.44683 * 9 7 6 36 36 H 1.08996 * 109.46846 * 305.06439 * 10 9 7 37 37 H 1.08997 * 109.46924 * 65.06082 * 10 9 7 38 38 H 0.97002 * 120.00021 * 0.02562 * 13 11 10 39 39 H 0.97003 * 120.00226 * 180.02562 * 17 16 14 40 40 H 1.08990 * 115.54887 * 39.44031 * 22 7 6 41 41 H 1.08991 * 117.50526 * 0.02562 * 23 22 7 42 42 H 1.09008 * 117.49656 * 145.02159 * 23 22 7 43 43 H 1.08991 * 117.49709 * 214.97574 * 24 22 7 44 44 H 1.08997 * 117.49464 * 359.97438 * 24 22 7 45 45 H 1.08006 * 124.44797 * 77.55535 * 25 2 1 46 46 H 1.07995 * 124.44598 * 180.02562 * 26 25 2 47 47 H 1.08994 * 110.38742 * 224.75275 * 27 26 25 48 48 H 1.09008 * 110.38392 * 102.37500 * 27 26 25 49 49 H 1.08999 * 111.03818 * 212.32474 * 28 2 1 50 50 H 1.09007 * 111.03937 * 336.21850 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7909 1.7865 0.8879 5 7 1.7037 2.2616 -0.9867 6 6 2.2179 3.6334 -0.9899 7 6 1.6772 4.3778 -2.2124 8 1 0.5947 4.4758 -2.1288 9 7 2.0080 3.6253 -3.4299 10 6 3.4601 3.4427 -3.5575 11 6 3.7689 2.7786 -4.8746 12 8 2.8682 2.4866 -5.6325 13 7 5.0462 2.5101 -5.2107 14 6 5.3272 1.9055 -6.4087 15 1 4.5251 1.6447 -7.0832 16 6 6.6440 1.6281 -6.7549 17 7 6.9133 1.0491 -7.9034 18 14 8.0314 2.0785 -5.5879 19 1 8.2945 0.9415 -4.6697 20 1 9.2581 2.3777 -6.3694 21 1 7.6443 3.2742 -4.7970 22 6 2.3111 5.7685 -2.2843 23 6 1.4338 6.9648 -1.9101 24 6 1.8089 6.7183 -3.3736 25 6 2.0588 -0.7575 -1.1957 26 6 2.4686 -1.9486 -0.8538 27 6 2.2821 -2.1840 0.6270 28 6 2.0687 -0.7742 1.2253 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5030 0.8962 32 1 1.1146 1.9627 -1.6970 33 1 1.8965 4.1440 -0.0822 34 1 3.3070 3.6131 -1.0294 35 1 1.5290 2.7375 -3.4477 36 1 3.9534 4.4137 -3.5157 37 1 3.8207 2.8165 -2.7415 38 1 5.7666 2.7439 -4.6047 39 1 7.8325 0.8551 -8.1450 40 1 3.3677 5.8175 -2.0217 41 1 0.4053 6.7612 -1.6123 42 1 1.9136 7.8012 -1.4016 43 1 2.5352 7.3926 -3.8273 44 1 1.0272 6.3523 -4.0392 45 1 2.0928 -0.3650 -2.2013 46 1 2.8869 -2.6708 -1.5392 47 1 3.1721 -2.6470 1.0530 48 1 1.4061 -2.8079 0.8050 49 1 3.0108 -0.3503 1.5728 50 1 1.3323 -0.7966 2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266424241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -23.702752 kcal Electronic energy + Delta-G solvation = -29835.272290 eV Core-core repulsion = 25863.623822 eV Total energy + Delta-G solvation = -3971.648468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79070 -39.22363 -38.07338 -37.65381 -35.54645 -34.09410 -33.48334 -31.67242 -31.52145 -29.42198 -28.84635 -26.67858 -25.72949 -24.20010 -23.49878 -22.34036 -21.59060 -20.33929 -19.93861 -19.25584 -18.95720 -18.31572 -17.47850 -16.64858 -16.18988 -15.70060 -15.56730 -15.40958 -15.09580 -14.97756 -14.71861 -14.11293 -13.88736 -13.75010 -13.52407 -13.23190 -13.13384 -13.02587 -12.68646 -12.50345 -12.29708 -12.21473 -11.96421 -11.89425 -11.65438 -11.51672 -11.49240 -11.42259 -11.16581 -11.06133 -11.01862 -10.59319 -10.36143 -10.26367 -9.97831 -9.92259 -9.56788 -9.24679 -9.12719 -8.64398 -8.21023 -8.16135 -6.31391 -3.82570 1.97483 2.57786 2.97542 3.03211 3.07492 3.15497 3.65993 3.74853 4.10101 4.19196 4.21878 4.32246 4.42309 4.61768 4.69436 4.74156 4.87282 4.97437 4.99683 5.06604 5.08597 5.15110 5.21729 5.26192 5.32881 5.39407 5.41159 5.48730 5.59350 5.60662 5.62862 5.66357 5.72780 5.80035 5.86759 5.89891 5.93837 5.95354 6.03666 6.06868 6.21334 6.25648 6.31986 6.63977 6.97979 7.28513 7.43201 7.57933 8.06948 8.14314 8.59782 8.94984 9.42720 9.83115 10.81730 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.004170 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.776231 B = 6712.290892 C = 9261.754862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C 0.530 3.470 4 O -0.539 6.539 5 N -0.727 5.727 6 C 0.083 3.917 7 C 0.109 3.891 8 H 0.090 0.910 9 N -0.650 5.650 10 C 0.044 3.956 11 C 0.452 3.548 12 O -0.564 6.564 13 N -0.591 5.591 14 C -0.304 4.304 15 H 0.119 0.881 16 C 0.043 3.957 17 N -0.882 5.882 18 Si 0.877 3.123 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.270 1.270 22 C -0.148 4.148 23 C -0.180 4.180 24 C -0.153 4.153 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.103 4.103 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.345 0.655 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 1.956 19.108 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 C 0.316 3.684 4 O -0.415 6.415 5 N -0.380 5.380 6 C -0.042 4.042 7 C -0.002 4.002 8 H 0.108 0.892 9 N -0.281 5.281 10 C -0.088 4.088 11 C 0.237 3.763 12 O -0.446 6.446 13 N -0.231 5.231 14 C -0.433 4.433 15 H 0.137 0.863 16 C -0.160 4.160 17 N -0.522 5.522 18 Si 0.704 3.296 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.195 1.195 22 C -0.167 4.167 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.181 4.181 26 C -0.166 4.166 27 C -0.140 4.140 28 C -0.144 4.144 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.790 2.496 18.658 22.212 hybrid contribution 1.332 -0.474 0.975 1.717 sum -10.458 2.022 19.633 22.336 Atomic orbital electron populations 1.21759 0.91642 1.03145 1.02389 1.20688 0.97153 0.91882 0.96392 1.20434 0.80089 0.86811 0.81035 1.90675 1.36363 1.77798 1.36702 1.45974 1.51463 1.12607 1.27931 1.22125 0.99998 0.81952 1.00170 1.21432 0.99722 0.92143 0.86860 0.89176 1.60189 1.07412 1.24837 1.35703 1.21758 0.89680 1.00983 0.96401 1.19694 0.83340 0.84624 0.88595 1.90557 1.45158 1.56061 1.52836 1.42217 1.06088 1.55509 1.19244 1.19416 0.94890 1.34538 0.94434 0.86289 1.25019 0.97306 0.97268 0.96436 1.69619 1.20327 1.41292 1.20921 0.86710 0.82800 0.79026 0.81112 1.19651 1.20126 1.19504 1.22057 0.98933 0.89769 1.05972 1.23008 1.00147 0.99283 0.99341 1.22815 1.03654 1.01306 0.91242 1.23087 1.00966 0.96179 0.97870 1.23362 0.98644 0.97526 0.97042 1.21419 1.02018 0.97359 0.93177 1.22497 1.02639 0.93918 0.95372 0.91915 0.91143 0.91895 0.76601 0.90961 0.91028 0.83536 0.89212 0.93604 0.79780 0.91631 0.87874 0.88928 0.88971 0.88998 0.87976 0.85038 0.85133 0.90760 0.90469 0.89303 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.38 37.16 0.31 -0.73 16 2 C -0.06 -0.60 0.74 -155.76 -0.11 -0.71 16 3 C 0.53 6.67 6.55 -10.99 -0.07 6.60 16 4 O -0.54 -8.66 15.48 5.55 0.09 -8.57 16 5 N -0.73 -7.81 5.22 -60.29 -0.31 -8.12 16 6 C 0.08 0.91 4.60 -4.04 -0.02 0.89 16 7 C 0.11 1.15 2.88 -67.71 -0.19 0.96 16 8 H 0.09 0.85 7.94 -51.92 -0.41 0.44 16 9 N -0.65 -8.98 5.87 -107.98 -0.63 -9.61 16 10 C 0.04 0.71 5.39 -4.97 -0.03 0.69 16 11 C 0.45 10.05 7.83 -10.99 -0.09 9.96 16 12 O -0.56 -14.70 15.89 5.55 0.09 -14.62 16 13 N -0.59 -14.06 5.09 -10.97 -0.06 -14.12 16 14 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 15 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 16 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 17 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 18 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.54 6.52 56.52 0.37 -5.18 16 22 C -0.15 -1.54 4.03 -90.62 -0.36 -1.91 16 23 C -0.18 -1.59 10.18 -26.69 -0.27 -1.86 16 24 C -0.15 -1.64 10.21 -26.69 -0.27 -1.91 16 25 C -0.16 -1.78 9.37 -35.70 -0.33 -2.11 16 26 C -0.15 -1.51 10.78 -35.70 -0.38 -1.89 16 27 C -0.10 -0.90 6.81 -26.83 -0.18 -1.09 16 28 C -0.11 -1.07 6.01 -25.02 -0.15 -1.22 16 29 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.70 6.51 -40.82 -0.27 3.44 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.90 6.78 -51.93 -0.35 0.55 16 35 H 0.34 4.72 7.21 -39.30 -0.28 4.43 16 36 H 0.09 1.35 6.68 -51.93 -0.35 1.01 16 37 H 0.05 0.70 6.68 -51.93 -0.35 0.35 16 38 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.09 7.68 -51.93 -0.40 0.69 16 41 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 49 H 0.09 1.08 6.99 -51.93 -0.36 0.71 16 50 H 0.08 0.65 7.90 -51.92 -0.41 0.24 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -33.73 402.04 -9.13 -42.86 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -8.01 Total: 18.18 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.41 Total: -1.98 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.23 Total: -56.84 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.73 -9.13 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266424241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.159 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds