Wall clock time and date at job start Tue Mar 31 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 110.34546 * 2 1 4 4 O 1.21285 * 120.00015 * 122.28878 * 3 2 1 5 5 N 1.34772 * 120.00158 * 302.28796 * 3 2 1 6 6 C 1.46504 * 120.00206 * 180.27374 * 5 3 2 7 7 C 1.53002 * 109.46931 * 179.72157 * 6 5 3 8 8 H 1.09007 * 109.47042 * 65.00661 * 7 6 5 9 9 N 1.46896 * 109.47567 * 305.00577 * 7 6 5 10 10 C 1.46912 * 110.99603 * 301.49342 * 9 7 6 11 11 C 1.50697 * 109.46677 * 185.06192 * 10 9 7 12 12 O 1.21287 * 120.00380 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99714 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99956 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00178 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99661 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99709 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00346 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46839 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.47023 * 209.99759 * 18 16 14 21 21 H 1.48493 * 109.46824 * 329.99953 * 18 16 14 22 22 C 1.53003 * 109.46795 * 185.00190 * 7 6 5 23 23 C 1.53001 * 117.49517 * 253.77027 * 22 7 6 24 24 C 1.53005 * 117.49768 * 185.11115 * 22 7 6 25 25 C 1.51097 * 110.48343 * 237.64539 * 2 1 3 26 26 C 1.30526 * 111.10652 * 257.58032 * 25 2 1 27 27 C 1.51100 * 111.10413 * 359.97438 * 26 25 2 28 28 C 1.54630 * 110.38596 * 122.28701 * 2 1 3 29 29 H 1.08996 * 109.47000 * 59.30012 * 1 2 3 30 30 H 1.09004 * 109.47018 * 179.29926 * 1 2 3 31 31 H 1.09005 * 109.46859 * 299.30052 * 1 2 3 32 32 H 0.97000 * 119.99822 * 359.97438 * 5 3 2 33 33 H 1.08991 * 109.47217 * 299.72336 * 6 5 3 34 34 H 1.08999 * 109.46861 * 59.73033 * 6 5 3 35 35 H 1.00890 * 111.00424 * 65.44683 * 9 7 6 36 36 H 1.08996 * 109.46846 * 305.06439 * 10 9 7 37 37 H 1.08997 * 109.46924 * 65.06082 * 10 9 7 38 38 H 0.97002 * 120.00021 * 0.02562 * 13 11 10 39 39 H 0.97003 * 120.00226 * 180.02562 * 17 16 14 40 40 H 1.08990 * 115.54887 * 39.44031 * 22 7 6 41 41 H 1.08991 * 117.50526 * 0.02562 * 23 22 7 42 42 H 1.09008 * 117.49656 * 145.02159 * 23 22 7 43 43 H 1.08991 * 117.49709 * 214.97574 * 24 22 7 44 44 H 1.08997 * 117.49464 * 359.97438 * 24 22 7 45 45 H 1.08006 * 124.44797 * 77.55535 * 25 2 1 46 46 H 1.07995 * 124.44598 * 180.02562 * 26 25 2 47 47 H 1.08994 * 110.38742 * 224.75275 * 27 26 25 48 48 H 1.09008 * 110.38392 * 102.37500 * 27 26 25 49 49 H 1.08999 * 111.03818 * 212.32474 * 28 2 1 50 50 H 1.09007 * 111.03937 * 336.21850 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7909 1.7865 0.8879 5 7 1.7037 2.2616 -0.9867 6 6 2.2179 3.6334 -0.9899 7 6 1.6772 4.3778 -2.2124 8 1 0.5947 4.4758 -2.1288 9 7 2.0080 3.6253 -3.4299 10 6 3.4601 3.4427 -3.5575 11 6 3.7689 2.7786 -4.8746 12 8 2.8682 2.4866 -5.6325 13 7 5.0462 2.5101 -5.2107 14 6 5.3272 1.9055 -6.4087 15 1 4.5251 1.6447 -7.0832 16 6 6.6440 1.6281 -6.7549 17 7 6.9133 1.0491 -7.9034 18 14 8.0314 2.0785 -5.5879 19 1 8.2945 0.9415 -4.6697 20 1 9.2581 2.3777 -6.3694 21 1 7.6443 3.2742 -4.7970 22 6 2.3111 5.7685 -2.2843 23 6 1.4338 6.9648 -1.9101 24 6 1.8089 6.7183 -3.3736 25 6 2.0588 -0.7575 -1.1957 26 6 2.4686 -1.9486 -0.8538 27 6 2.2821 -2.1840 0.6270 28 6 2.0687 -0.7742 1.2253 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5030 0.8962 32 1 1.1146 1.9627 -1.6970 33 1 1.8965 4.1440 -0.0822 34 1 3.3070 3.6131 -1.0294 35 1 1.5290 2.7375 -3.4477 36 1 3.9534 4.4137 -3.5157 37 1 3.8207 2.8165 -2.7415 38 1 5.7666 2.7439 -4.6047 39 1 7.8325 0.8551 -8.1450 40 1 3.3677 5.8175 -2.0217 41 1 0.4053 6.7612 -1.6123 42 1 1.9136 7.8012 -1.4016 43 1 2.5352 7.3926 -3.8273 44 1 1.0272 6.3523 -4.0392 45 1 2.0928 -0.3650 -2.2013 46 1 2.8869 -2.6708 -1.5392 47 1 3.1721 -2.6470 1.0530 48 1 1.4061 -2.8079 0.8050 49 1 3.0108 -0.3503 1.5728 50 1 1.3323 -0.7966 2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266424241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:02 Heat of formation + Delta-G solvation = -48.245931 kcal Electronic energy + Delta-G solvation = -29836.336562 eV Core-core repulsion = 25863.623822 eV Total energy + Delta-G solvation = -3972.712740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.69579 -40.52496 -39.46830 -38.60557 -36.52574 -35.98708 -34.67300 -33.73960 -32.32142 -30.40618 -29.75924 -28.09077 -26.50804 -25.86032 -24.45645 -23.09148 -22.47996 -21.59313 -21.02030 -20.73683 -20.07706 -19.78113 -18.32345 -18.14513 -17.20530 -17.03158 -16.67975 -16.46662 -16.35167 -16.06946 -15.92134 -15.53232 -15.10837 -14.87714 -14.65358 -14.45517 -14.31740 -14.14483 -13.94183 -13.84755 -13.44174 -13.14920 -13.04919 -12.98187 -12.77162 -12.64571 -12.44011 -12.27978 -12.25282 -12.21820 -12.01300 -11.93313 -11.79484 -11.53299 -11.16206 -11.07596 -10.84316 -10.45265 -10.25501 -10.19179 -9.93366 -9.40566 -8.42813 -6.02597 1.14711 1.27165 1.31347 1.39846 1.62919 1.94297 2.08775 2.19581 2.64594 2.99342 3.13882 3.41815 3.50262 3.53963 3.57601 3.82395 3.94226 3.98757 4.08722 4.18722 4.22565 4.25563 4.28599 4.35656 4.38929 4.47961 4.48362 4.59482 4.68974 4.72025 4.77212 4.90425 4.91096 4.93888 4.95522 5.14119 5.15056 5.16720 5.27022 5.32033 5.37160 5.40091 5.50487 5.53136 5.82787 5.85267 5.98051 6.31644 6.40152 6.58028 6.87095 7.13528 7.38680 7.94462 8.74680 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.004170 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.776231 B = 6712.290892 C = 9261.754862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 C 0.526 3.474 4 O -0.577 6.577 5 N -0.719 5.719 6 C 0.089 3.911 7 C 0.121 3.879 8 H 0.108 0.892 9 N -0.660 5.660 10 C 0.064 3.936 11 C 0.453 3.547 12 O -0.606 6.606 13 N -0.594 5.594 14 C -0.325 4.325 15 H 0.059 0.941 16 C -0.010 4.010 17 N -0.932 5.932 18 Si 0.956 3.044 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.236 1.236 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.180 4.180 26 C -0.150 4.150 27 C -0.098 4.098 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.406 0.594 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.344 0.656 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.386 0.614 39 H 0.279 0.721 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.121 0.879 46 H 0.135 0.865 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.063 0.937 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 2.941 22.093 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C 0.313 3.687 4 O -0.457 6.457 5 N -0.371 5.371 6 C -0.037 4.037 7 C 0.011 3.989 8 H 0.126 0.874 9 N -0.292 5.292 10 C -0.068 4.068 11 C 0.241 3.759 12 O -0.490 6.490 13 N -0.235 5.235 14 C -0.454 4.454 15 H 0.078 0.922 16 C -0.209 4.209 17 N -0.573 5.573 18 Si 0.777 3.223 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.159 1.159 22 C -0.179 4.179 23 C -0.193 4.193 24 C -0.206 4.206 25 C -0.198 4.198 26 C -0.168 4.168 27 C -0.135 4.135 28 C -0.146 4.146 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.139 0.861 46 H 0.152 0.848 47 H 0.098 0.902 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.944 3.500 21.646 24.969 hybrid contribution 1.241 -0.794 -0.039 1.474 sum -10.704 2.706 21.606 24.264 Atomic orbital electron populations 1.21773 0.89655 1.04138 1.03044 1.20715 0.98652 0.90247 0.96114 1.20880 0.79472 0.87733 0.80599 1.90655 1.38144 1.78659 1.38235 1.45949 1.51039 1.12486 1.27639 1.22067 0.99130 0.82000 1.00495 1.21440 1.00722 0.91654 0.85051 0.87383 1.60173 1.05853 1.25189 1.37993 1.21559 0.91560 1.01207 0.92520 1.20869 0.82212 0.82827 0.90039 1.90537 1.46372 1.57280 1.54827 1.42076 1.07342 1.55894 1.18237 1.19004 0.94082 1.36572 0.95733 0.92248 1.25990 1.00121 0.96407 0.98392 1.69788 1.21494 1.42557 1.23444 0.85485 0.77935 0.80216 0.78692 1.18461 1.19755 1.15948 1.22113 0.99454 0.89934 1.06391 1.23076 1.00514 0.98397 0.97359 1.22788 1.03695 1.01930 0.92196 1.23098 1.02216 0.96801 0.97727 1.23601 0.97682 0.97350 0.98118 1.21436 1.03227 0.96957 0.91847 1.22500 1.01876 0.94401 0.95805 0.91224 0.90008 0.91281 0.75683 0.90300 0.92411 0.83554 0.87376 0.92074 0.77912 0.91165 0.87799 0.87673 0.87671 0.89203 0.89319 0.86140 0.84762 0.90209 0.88345 0.91801 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.38 71.98 0.60 -1.16 16 2 C -0.05 -1.05 0.74 -52.99 -0.04 -1.09 16 3 C 0.53 12.71 6.55 87.66 0.57 13.28 16 4 O -0.58 -18.23 15.48 -3.05 -0.05 -18.27 16 5 N -0.72 -14.38 5.22 -463.06 -2.42 -16.79 16 6 C 0.09 1.76 4.60 86.38 0.40 2.16 16 7 C 0.12 2.28 2.88 44.92 0.13 2.41 16 8 H 0.11 1.72 7.94 -2.38 -0.02 1.70 16 9 N -0.66 -17.36 5.87 -495.55 -2.91 -20.27 16 10 C 0.06 1.96 5.39 85.55 0.46 2.43 16 11 C 0.45 20.24 7.83 87.66 0.69 20.92 16 12 O -0.61 -32.61 15.89 -3.05 -0.05 -32.66 16 13 N -0.59 -28.29 5.09 -306.99 -1.56 -29.86 16 14 C -0.32 -19.02 10.16 84.04 0.85 -18.17 16 15 H 0.06 4.11 7.39 -2.92 -0.02 4.09 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 18 Si 0.96 39.72 27.74 68.60 1.90 41.62 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 22 C -0.16 -2.93 4.03 -10.79 -0.04 -2.98 16 23 C -0.16 -2.27 10.18 30.62 0.31 -1.96 16 24 C -0.17 -3.32 10.21 30.62 0.31 -3.01 16 25 C -0.18 -3.82 9.37 26.26 0.25 -3.57 16 26 C -0.15 -2.90 10.78 26.26 0.28 -2.62 16 27 C -0.10 -1.54 6.81 30.53 0.21 -1.34 16 28 C -0.11 -2.03 6.01 31.70 0.19 -1.84 16 29 H 0.07 0.85 7.50 -2.39 -0.02 0.83 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.41 6.95 6.51 -92.71 -0.60 6.35 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.34 6.78 -2.39 -0.02 1.33 16 35 H 0.34 9.10 7.21 -89.70 -0.65 8.45 16 36 H 0.11 3.00 6.68 -2.39 -0.02 2.98 16 37 H 0.06 1.74 6.68 -2.39 -0.02 1.72 16 38 H 0.39 15.71 5.76 -92.71 -0.53 15.18 16 39 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.10 1.92 7.68 -2.39 -0.02 1.90 16 41 H 0.10 1.29 8.08 -2.39 -0.02 1.28 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 46 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.06 1.53 6.99 -2.39 -0.02 1.52 16 50 H 0.09 1.40 7.90 -2.38 -0.02 1.38 16 Total: -1.00 -77.60 402.04 -0.01 -77.61 By element: Atomic # 1 Polarization: 52.06 SS G_CDS: -0.87 Total: 51.18 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.64 Total: 3.38 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.59 Total: -122.86 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.10 Total: -50.93 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.62 kcal Total: -77.60 -0.01 -77.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266424241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.363 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds