Wall clock time and date at job start Tue Mar 31 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 110.34447 * 2 1 4 4 O 1.21283 * 120.00062 * 122.29102 * 3 2 1 5 5 N 1.34776 * 120.00169 * 302.00991 * 3 2 1 6 6 C 1.46494 * 120.00382 * 180.27347 * 5 3 2 7 7 C 1.52993 * 109.47290 * 180.02562 * 6 5 3 8 8 H 1.09006 * 109.47244 * 294.99744 * 7 6 5 9 9 N 1.46900 * 109.47397 * 55.00038 * 7 6 5 10 10 C 1.46897 * 110.99933 * 204.94042 * 9 7 6 11 11 C 1.50705 * 109.46846 * 174.68266 * 10 9 7 12 12 O 1.21292 * 120.00063 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00024 * 180.02562 * 11 10 9 14 14 C 1.37096 * 120.00099 * 180.02562 * 13 11 10 15 15 H 1.08006 * 119.99879 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00268 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00001 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00238 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46894 * 60.00012 * 18 16 14 20 20 H 1.48502 * 109.46878 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46891 * 300.00033 * 18 16 14 22 22 C 1.53006 * 109.47170 * 175.00445 * 7 6 5 23 23 C 1.53000 * 117.50239 * 132.56862 * 22 7 6 24 24 C 1.52994 * 117.50017 * 63.90404 * 22 7 6 25 25 C 1.51105 * 110.48435 * 237.65002 * 2 1 3 26 26 C 1.30527 * 111.10240 * 257.57965 * 25 2 1 27 27 C 1.51107 * 111.10406 * 359.97438 * 26 25 2 28 28 C 1.54629 * 104.72613 * 343.56649 * 27 26 25 29 29 H 1.09001 * 109.47005 * 59.29857 * 1 2 3 30 30 H 1.09004 * 109.47081 * 179.29629 * 1 2 3 31 31 H 1.08994 * 109.47065 * 299.29701 * 1 2 3 32 32 H 0.97008 * 119.99559 * 0.28384 * 5 3 2 33 33 H 1.09006 * 109.47101 * 300.00708 * 6 5 3 34 34 H 1.09005 * 109.47075 * 60.00121 * 6 5 3 35 35 H 1.00905 * 110.99876 * 80.98927 * 9 7 6 36 36 H 1.09001 * 109.47448 * 294.68197 * 10 9 7 37 37 H 1.09004 * 109.46922 * 54.68681 * 10 9 7 38 38 H 0.96997 * 119.99659 * 0.02562 * 13 11 10 39 39 H 0.97003 * 120.00582 * 180.02562 * 17 16 14 40 40 H 1.09004 * 115.54487 * 278.23993 * 22 7 6 41 41 H 1.09002 * 117.49643 * 359.97438 * 23 22 7 42 42 H 1.08993 * 117.50093 * 145.02143 * 23 22 7 43 43 H 1.08998 * 117.49948 * 214.98118 * 24 22 7 44 44 H 1.09005 * 117.49969 * 359.97438 * 24 22 7 45 45 H 1.07999 * 124.45255 * 77.54932 * 25 2 1 46 46 H 1.08002 * 124.44542 * 180.02562 * 26 25 2 47 47 H 1.08997 * 110.38430 * 224.75569 * 27 26 25 48 48 H 1.08999 * 110.38116 * 102.38328 * 27 26 25 49 49 H 1.08991 * 111.03913 * 266.60113 * 28 27 26 50 50 H 1.08997 * 111.07106 * 142.67323 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7909 1.7865 0.8879 5 7 1.7081 2.2600 -0.9897 6 6 2.2222 3.6317 -0.9930 7 6 1.6811 4.3763 -2.2150 8 1 2.0745 3.9188 -3.1229 9 7 0.2141 4.3006 -2.2246 10 6 -0.3119 4.4502 -3.5880 11 6 -1.8038 4.2375 -3.5770 12 8 -2.3730 3.9866 -2.5358 13 7 -2.5056 4.3262 -4.7242 14 6 -3.8629 4.1333 -4.7141 15 1 -4.3697 3.9098 -3.7869 16 6 -4.5864 4.2241 -5.8969 17 7 -3.9696 4.4945 -7.0253 18 14 -6.4357 3.9606 -5.8833 19 1 -7.0724 4.9660 -4.9951 20 1 -6.9673 4.1111 -7.2617 21 1 -6.7374 2.5956 -5.3821 22 6 2.1158 5.8420 -2.1531 23 6 2.7119 6.4564 -3.4212 24 6 3.6150 6.1379 -2.2269 25 6 2.0588 -0.7574 -1.1958 26 6 2.4686 -1.9486 -0.8539 27 6 2.2820 -2.1840 0.6270 28 6 2.0695 -0.7741 1.2253 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 1.1187 1.9612 -1.6999 33 1 1.9009 4.1423 -0.0851 34 1 3.3114 3.6115 -1.0323 35 1 -0.1876 4.9881 -1.6047 36 1 -0.0904 5.4523 -3.9551 37 1 0.1554 3.7127 -4.2406 38 1 -2.0504 4.5265 -5.5570 39 1 -4.4747 4.5583 -7.8511 40 1 1.5061 6.4868 -1.5200 41 1 2.7948 5.8162 -4.2995 42 1 2.4948 7.5054 -3.6223 43 1 3.9916 6.9777 -1.6429 44 1 4.2918 5.2884 -2.3192 45 1 2.0927 -0.3650 -2.2014 46 1 2.8869 -2.6708 -1.5394 47 1 3.1721 -2.6470 1.0529 48 1 1.4062 -2.8080 0.8048 49 1 3.0117 -0.3502 1.5724 50 1 1.3333 -0.7962 2.0288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266424242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:05 Heat of formation + Delta-G solvation = -57.143356 kcal Electronic energy + Delta-G solvation = -29210.199456 eV Core-core repulsion = 25237.100894 eV Total energy + Delta-G solvation = -3973.098561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.51800 -40.29246 -39.38481 -38.55121 -36.22402 -35.85863 -34.86353 -33.22055 -32.33828 -30.44882 -29.70973 -27.75161 -26.46953 -25.65607 -24.19012 -23.25216 -22.36330 -21.63834 -21.03669 -20.67517 -19.89423 -19.65566 -18.22475 -17.76700 -17.20838 -16.85427 -16.70418 -16.37351 -16.31136 -15.82793 -15.76250 -15.58868 -15.22521 -14.82703 -14.68187 -14.34051 -14.00797 -13.83843 -13.63197 -13.49917 -13.30700 -13.11908 -12.99245 -12.93169 -12.69289 -12.59019 -12.44294 -12.40681 -12.25516 -12.19808 -12.12931 -12.12284 -11.74904 -11.47276 -11.40930 -11.03523 -10.75269 -10.30411 -9.97944 -9.97484 -9.85931 -9.33076 -8.44301 -5.92303 1.24718 1.40683 1.42755 1.52960 1.72817 2.10384 2.28602 2.31675 2.83395 2.92004 3.23606 3.49050 3.54424 3.63308 3.71697 3.91934 3.98823 4.05372 4.06827 4.15409 4.30477 4.34952 4.37245 4.41729 4.47575 4.56410 4.61001 4.64821 4.72875 4.76952 4.77647 4.83177 4.90585 4.97468 4.98638 5.04284 5.18849 5.20462 5.22342 5.27228 5.32488 5.43197 5.52901 5.56359 5.89009 5.93741 6.10364 6.33897 6.62844 6.63831 7.16177 7.29081 7.60937 8.16644 8.72786 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009013 B = 0.003067 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.768148 B = 9127.941519 C =11524.618577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 C 0.521 3.479 4 O -0.587 6.587 5 N -0.704 5.704 6 C 0.140 3.860 7 C 0.118 3.882 8 H 0.096 0.904 9 N -0.665 5.665 10 C 0.068 3.932 11 C 0.440 3.560 12 O -0.620 6.620 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.078 0.922 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.988 3.012 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.194 4.194 23 C -0.173 4.173 24 C -0.163 4.163 25 C -0.176 4.176 26 C -0.144 4.144 27 C -0.100 4.100 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.411 0.589 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.345 0.655 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.134 0.866 46 H 0.149 0.851 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.758 -6.431 6.943 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C 0.308 3.692 4 O -0.468 6.468 5 N -0.354 5.354 6 C 0.015 3.985 7 C 0.008 3.992 8 H 0.114 0.886 9 N -0.296 5.296 10 C -0.064 4.064 11 C 0.228 3.772 12 O -0.506 6.506 13 N -0.212 5.212 14 C -0.461 4.461 15 H 0.096 0.904 16 C -0.211 4.211 17 N -0.562 5.562 18 Si 0.812 3.188 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.214 4.214 23 C -0.210 4.210 24 C -0.201 4.201 25 C -0.194 4.194 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.151 0.849 46 H 0.167 0.833 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.087 0.913 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.785 -6.980 8.030 19.873 hybrid contribution -1.074 1.262 -0.986 1.928 sum 15.711 -5.718 7.043 18.142 Atomic orbital electron populations 1.21725 0.91240 1.03446 1.02253 1.20693 0.97290 0.90865 0.97022 1.20865 0.79654 0.87948 0.80730 1.90620 1.39094 1.78895 1.38239 1.45829 1.50120 1.12054 1.27349 1.21228 0.97966 0.81428 0.97852 1.21374 0.87039 0.92573 0.98257 0.88574 1.60139 1.04650 1.57059 1.07769 1.21532 0.90605 1.02180 0.92066 1.20898 0.90395 0.82368 0.83585 1.90507 1.72717 1.54670 1.32740 1.41915 1.07429 1.62803 1.09022 1.19600 0.84011 1.47135 0.95369 0.90406 1.25967 1.04486 0.96548 0.94135 1.69658 1.38360 1.48942 0.99213 0.85055 0.77263 0.78887 0.77562 1.19871 1.19632 1.19699 1.23008 0.98179 0.96868 1.03368 1.23081 1.03669 1.01995 0.92214 1.22971 0.91747 1.03821 1.01565 1.23096 1.01864 0.96763 0.97678 1.23585 0.97849 0.97090 0.97615 1.21443 1.03118 0.96368 0.92737 1.22486 1.01674 0.94909 0.95648 0.92361 0.90062 0.92725 0.75225 0.93138 0.90708 0.83545 0.91600 0.87544 0.77052 0.91390 0.88099 0.88101 0.88489 0.88067 0.87958 0.84864 0.83345 0.89660 0.89095 0.91280 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.38 71.98 0.60 -2.33 16 2 C -0.06 -1.26 0.74 -52.98 -0.04 -1.30 16 3 C 0.52 14.55 6.55 87.66 0.57 15.12 16 4 O -0.59 -20.24 15.48 -3.04 -0.05 -20.29 16 5 N -0.70 -17.55 5.25 -463.07 -2.43 -19.98 16 6 C 0.14 3.25 5.19 86.38 0.45 3.70 16 7 C 0.12 2.45 2.33 44.92 0.10 2.55 16 8 H 0.10 1.80 7.51 -2.38 -0.02 1.78 16 9 N -0.67 -18.41 5.22 -495.56 -2.59 -21.00 16 10 C 0.07 2.09 5.99 85.56 0.51 2.60 16 11 C 0.44 19.69 7.83 87.66 0.69 20.37 16 12 O -0.62 -32.79 15.89 -3.07 -0.05 -32.84 16 13 N -0.57 -28.25 5.29 -306.98 -1.62 -29.87 16 14 C -0.33 -18.37 9.68 84.04 0.81 -17.55 16 15 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 16 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 17 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 18 Si 0.99 42.28 29.55 68.60 2.03 44.30 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.19 -3.59 5.07 -10.79 -0.05 -3.65 16 23 C -0.17 -2.82 10.18 30.62 0.31 -2.51 16 24 C -0.16 -2.50 9.86 30.62 0.30 -2.20 16 25 C -0.18 -3.40 9.37 26.26 0.25 -3.15 16 26 C -0.14 -2.30 10.78 26.26 0.28 -2.02 16 27 C -0.10 -1.54 6.81 30.53 0.21 -1.33 16 28 C -0.11 -2.30 6.01 31.71 0.19 -2.10 16 29 H 0.06 1.45 7.50 -2.39 -0.02 1.43 16 30 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 10.00 7.48 -92.70 -0.69 9.31 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.07 1.65 7.73 -2.38 -0.02 1.63 16 35 H 0.35 10.53 8.27 -89.69 -0.74 9.79 16 36 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.11 2.82 7.92 -2.39 -0.02 2.80 16 38 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 39 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.10 2.03 7.98 -2.39 -0.02 2.01 16 41 H 0.10 1.56 8.07 -2.39 -0.02 1.54 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.44 7.91 -2.38 -0.02 1.42 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.72 6.99 -2.39 -0.02 1.70 16 50 H 0.08 1.57 7.90 -2.39 -0.02 1.55 16 Total: -1.00 -68.49 411.18 0.02 -68.47 By element: Atomic # 1 Polarization: 54.79 SS G_CDS: -1.21 Total: 53.59 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.66 Total: 6.06 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -6.36 Total: -119.29 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.10 Total: -53.13 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -68.49 0.02 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266424242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.328 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds