Wall clock time and date at job start Tue Mar 31 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 110.34399 * 2 1 4 4 O 1.21277 * 119.99942 * 237.71423 * 3 2 1 5 5 N 1.34771 * 120.00114 * 57.71042 * 3 2 1 6 6 C 1.46500 * 120.00428 * 180.27551 * 5 3 2 7 7 C 1.52994 * 109.47654 * 179.72561 * 6 5 3 8 8 H 1.09002 * 109.47296 * 65.00090 * 7 6 5 9 9 N 1.46897 * 109.47153 * 305.00205 * 7 6 5 10 10 C 1.46906 * 111.00415 * 144.62718 * 9 7 6 11 11 C 1.50693 * 109.47387 * 174.67992 * 10 9 7 12 12 O 1.21302 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00175 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00014 * 359.97438 * 14 13 11 16 16 C 1.38946 * 119.99961 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00074 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00069 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47187 * 90.00193 * 18 16 14 20 20 H 1.48504 * 109.46943 * 210.00044 * 18 16 14 21 21 H 1.48492 * 109.46962 * 330.00193 * 18 16 14 22 22 C 1.53004 * 109.47380 * 184.99884 * 7 6 5 23 23 C 1.52999 * 117.49735 * 134.09243 * 22 7 6 24 24 C 1.53002 * 117.49640 * 65.43611 * 22 7 6 25 25 C 1.51100 * 110.48388 * 122.35088 * 2 1 3 26 26 C 1.30524 * 111.10294 * 135.30084 * 25 2 1 27 27 C 1.51105 * 111.10595 * 359.97438 * 26 25 2 28 28 C 1.54634 * 110.38719 * 237.71347 * 2 1 3 29 29 H 1.09007 * 109.47104 * 60.69852 * 1 2 3 30 30 H 1.08996 * 109.47066 * 180.70238 * 1 2 3 31 31 H 1.09004 * 109.47004 * 300.70220 * 1 2 3 32 32 H 0.97001 * 119.99875 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.46934 * 299.73154 * 6 5 3 34 34 H 1.09001 * 109.47040 * 59.72468 * 6 5 3 35 35 H 1.00905 * 111.00067 * 20.67551 * 9 7 6 36 36 H 1.08997 * 109.46774 * 294.68199 * 10 9 7 37 37 H 1.09001 * 109.46761 * 54.67769 * 10 9 7 38 38 H 0.96998 * 119.99816 * 359.97438 * 13 11 10 39 39 H 0.97004 * 120.00401 * 179.97438 * 17 16 14 40 40 H 1.08992 * 115.54652 * 279.76433 * 22 7 6 41 41 H 1.09005 * 117.50158 * 0.02562 * 23 22 7 42 42 H 1.09001 * 117.49728 * 145.02042 * 23 22 7 43 43 H 1.08999 * 117.49549 * 214.98552 * 24 22 7 44 44 H 1.09001 * 117.49632 * 359.97438 * 24 22 7 45 45 H 1.08004 * 124.44634 * 315.27541 * 25 2 1 46 46 H 1.08001 * 124.44595 * 180.02562 * 26 25 2 47 47 H 1.08994 * 110.38507 * 224.75414 * 27 26 25 48 48 H 1.08998 * 110.48047 * 102.42852 * 27 26 25 49 49 H 1.08999 * 111.03722 * 334.47047 * 28 2 1 50 50 H 1.09006 * 111.03835 * 98.40965 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4131 0.0000 4 8 2.7907 1.7866 -0.8879 5 7 1.7036 2.2617 0.9867 6 6 2.2080 3.6371 0.9835 7 6 1.6585 4.3848 2.1999 8 1 2.0526 3.9353 3.1113 9 7 0.1920 4.2988 2.2061 10 6 -0.3241 4.2037 3.5782 11 6 -1.8301 4.2490 3.5527 12 8 -2.4160 4.3509 2.4955 13 7 -2.5260 4.1772 4.7047 14 6 -3.8962 4.2179 4.6815 15 1 -4.4179 4.3078 3.7402 16 6 -4.6136 4.1444 5.8691 17 7 -5.9270 4.1839 5.8470 18 14 -3.7112 3.9896 7.4974 19 1 -3.4320 5.3437 8.0394 20 1 -4.5532 3.2350 8.4602 21 1 -2.4311 3.2670 7.2871 22 6 2.0830 5.8531 2.1306 23 6 1.0148 6.9114 2.4135 24 6 1.5214 6.6976 0.9850 25 6 2.0588 -0.7574 1.1958 26 6 3.0340 -1.5545 0.8535 27 6 3.3179 -1.4620 -0.6278 28 6 2.0687 -0.7742 -1.2254 29 1 -0.3634 0.5030 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 1.1145 1.9628 1.6970 33 1 3.2972 3.6247 1.0261 34 1 1.8859 4.1401 0.0717 35 1 -0.1271 3.5230 1.6452 36 1 0.0038 3.2653 4.0254 37 1 0.0547 5.0388 4.1675 38 1 -2.0575 4.0961 5.5501 39 1 -6.4279 4.1323 6.6761 40 1 3.1003 6.0643 2.4598 41 1 0.0097 6.5615 2.6494 42 1 1.3296 7.8190 2.9285 43 1 2.1692 7.4645 0.5607 44 1 0.8498 6.2069 0.2804 45 1 1.6797 -0.6527 2.2017 46 1 3.5675 -2.1965 1.5388 47 1 3.4438 -2.4576 -1.0531 48 1 4.2066 -0.8575 -0.8088 49 1 1.3445 -1.5116 -1.5716 50 1 2.3445 -0.0916 -2.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266424244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:15 Heat of formation + Delta-G solvation = -20.192090 kcal Electronic energy + Delta-G solvation = -29592.779175 eV Core-core repulsion = 25621.282941 eV Total energy + Delta-G solvation = -3971.496234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85283 -39.19765 -38.09425 -37.52793 -35.20841 -34.16351 -33.47834 -31.87787 -31.67304 -29.68148 -29.03754 -26.39078 -25.32266 -24.11600 -23.64415 -22.29216 -21.70630 -20.28398 -19.65195 -19.46575 -19.03810 -18.37317 -17.40792 -16.59641 -16.22772 -15.93369 -15.61515 -15.52981 -14.96456 -14.80413 -14.66217 -14.24829 -14.01495 -13.63055 -13.48783 -13.30185 -13.16204 -12.64684 -12.58201 -12.40662 -12.30069 -12.17955 -12.10342 -11.87935 -11.73670 -11.46734 -11.37805 -11.34549 -11.21835 -11.06539 -11.00654 -10.63505 -10.25206 -10.13203 -10.01600 -9.88048 -9.61011 -9.25678 -9.13696 -8.66011 -8.26183 -8.21007 -6.34690 -3.86336 1.83842 2.53528 2.98070 2.98900 3.03468 3.11917 3.68703 3.90394 3.93854 4.06646 4.18498 4.32842 4.52116 4.69930 4.74667 4.78365 4.86904 4.97206 5.03006 5.11321 5.16780 5.23734 5.27440 5.33689 5.36604 5.44410 5.46787 5.52018 5.58146 5.62621 5.67913 5.71104 5.80130 5.82746 5.88270 5.90586 5.93753 6.02166 6.03479 6.13835 6.25561 6.35814 6.52265 6.59421 6.98198 7.26753 7.43337 7.54069 8.04767 8.10536 8.55685 8.91400 9.38478 9.78446 10.78376 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.003126 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.798813 B = 8955.511143 C =10670.390020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C 0.534 3.466 4 O -0.537 6.537 5 N -0.729 5.729 6 C 0.117 3.883 7 C 0.106 3.894 8 H 0.059 0.941 9 N -0.661 5.661 10 C 0.045 3.955 11 C 0.449 3.551 12 O -0.561 6.561 13 N -0.590 5.590 14 C -0.305 4.305 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.881 5.881 18 Si 0.879 3.121 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.270 1.270 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.166 4.166 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.103 4.103 28 C -0.107 4.107 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.350 0.650 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.289 -7.787 -6.201 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C 0.321 3.679 4 O -0.414 6.414 5 N -0.382 5.382 6 C -0.007 4.007 7 C -0.004 4.004 8 H 0.077 0.923 9 N -0.295 5.295 10 C -0.088 4.088 11 C 0.234 3.766 12 O -0.443 6.443 13 N -0.230 5.230 14 C -0.434 4.434 15 H 0.137 0.863 16 C -0.161 4.161 17 N -0.521 5.521 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.175 4.175 23 C -0.199 4.199 24 C -0.203 4.203 25 C -0.182 4.182 26 C -0.166 4.166 27 C -0.140 4.140 28 C -0.145 4.145 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.171 0.829 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.113 -6.760 -7.505 22.507 hybrid contribution 0.500 -1.105 2.300 2.601 sum 20.613 -7.865 -5.205 22.668 Atomic orbital electron populations 1.21829 0.91497 1.03233 1.03058 1.20662 0.97479 0.92014 0.96083 1.20299 0.80072 0.86606 0.80970 1.90668 1.36469 1.77836 1.36418 1.46045 1.51663 1.12528 1.27918 1.21605 0.99068 0.80648 0.99381 1.21228 0.88323 0.94366 0.96522 0.92348 1.59966 1.06632 1.51477 1.11446 1.21860 0.95241 1.01041 0.90660 1.19672 0.87912 0.84261 0.84734 1.90586 1.70507 1.53192 1.29990 1.42210 1.07532 1.66637 1.06583 1.19419 0.79164 1.47743 0.97036 0.86278 1.25038 0.95431 0.97653 0.97994 1.69621 1.05085 1.49172 1.28174 0.86680 0.79604 0.78924 0.84195 1.19595 1.20200 1.19582 1.22189 0.98022 0.91218 1.06103 1.22984 1.00267 0.98167 0.98499 1.22792 1.03393 1.02000 0.92081 1.23075 0.98807 0.98384 0.97887 1.23402 0.97248 0.98601 0.97386 1.21404 0.98992 1.00890 0.92759 1.22483 0.96766 0.98756 0.96504 0.91554 0.91087 0.91800 0.76683 0.90838 0.90156 0.82883 0.93844 0.89027 0.79754 0.91588 0.88087 0.86604 0.89994 0.89812 0.88309 0.85264 0.85461 0.90906 0.90286 0.90334 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.39 37.16 0.31 -0.99 16 2 C -0.06 -0.58 0.74 -155.75 -0.12 -0.70 16 3 C 0.53 6.47 6.54 -10.98 -0.07 6.39 16 4 O -0.54 -8.19 15.46 5.56 0.09 -8.10 16 5 N -0.73 -7.74 4.78 -60.30 -0.29 -8.03 16 6 C 0.12 1.27 5.19 -4.05 -0.02 1.25 16 7 C 0.11 1.14 2.65 -67.72 -0.18 0.96 16 8 H 0.06 0.58 7.71 -51.93 -0.40 0.17 16 9 N -0.66 -9.02 4.44 -107.99 -0.48 -9.50 16 10 C 0.04 0.66 5.12 -4.98 -0.03 0.64 16 11 C 0.45 9.52 7.83 -10.99 -0.09 9.44 16 12 O -0.56 -14.32 15.89 5.54 0.09 -14.23 16 13 N -0.59 -13.39 5.09 -10.97 -0.06 -13.45 16 14 C -0.30 -8.38 10.16 -14.93 -0.15 -8.53 16 15 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 16 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 18 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.22 6.52 56.52 0.37 -4.86 16 22 C -0.16 -1.68 5.79 -90.62 -0.52 -2.21 16 23 C -0.16 -2.03 9.42 -26.70 -0.25 -2.29 16 24 C -0.17 -1.94 9.59 -26.69 -0.26 -2.20 16 25 C -0.16 -1.43 9.37 -35.70 -0.33 -1.77 16 26 C -0.15 -1.23 10.78 -35.69 -0.38 -1.61 16 27 C -0.10 -0.88 6.81 -26.83 -0.18 -1.06 16 28 C -0.11 -1.01 6.03 -25.02 -0.15 -1.16 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.60 7.50 -51.93 -0.39 0.21 16 32 H 0.40 3.80 6.91 -40.82 -0.28 3.51 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.00 7.52 -51.93 -0.39 0.61 16 35 H 0.35 4.98 6.70 -39.29 -0.26 4.72 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.25 7.31 -51.93 -0.38 0.87 16 38 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.12 1.80 6.03 -51.93 -0.31 1.49 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 50 H 0.09 0.99 6.95 -51.93 -0.36 0.63 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -32.61 401.31 -9.11 -41.71 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -8.04 Total: 18.75 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.52 Total: -2.81 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.05 Total: -55.51 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.17 Total: -22.33 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.61 -9.11 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266424244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.520 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds