Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 110.34399 * 2 1 4 4 O 1.21277 * 119.99942 * 237.71423 * 3 2 1 5 5 N 1.34771 * 120.00114 * 57.71042 * 3 2 1 6 6 C 1.46500 * 120.00428 * 180.27551 * 5 3 2 7 7 C 1.52994 * 109.47654 * 179.72561 * 6 5 3 8 8 H 1.09002 * 109.47296 * 65.00090 * 7 6 5 9 9 N 1.46897 * 109.47153 * 305.00205 * 7 6 5 10 10 C 1.46906 * 111.00415 * 144.62718 * 9 7 6 11 11 C 1.50693 * 109.47387 * 174.67992 * 10 9 7 12 12 O 1.21302 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00175 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00014 * 359.97438 * 14 13 11 16 16 C 1.38946 * 119.99961 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00074 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00069 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47187 * 90.00193 * 18 16 14 20 20 H 1.48504 * 109.46943 * 210.00044 * 18 16 14 21 21 H 1.48492 * 109.46962 * 330.00193 * 18 16 14 22 22 C 1.53004 * 109.47380 * 184.99884 * 7 6 5 23 23 C 1.52999 * 117.49735 * 134.09243 * 22 7 6 24 24 C 1.53002 * 117.49640 * 65.43611 * 22 7 6 25 25 C 1.51100 * 110.48388 * 122.35088 * 2 1 3 26 26 C 1.30524 * 111.10294 * 135.30084 * 25 2 1 27 27 C 1.51105 * 111.10595 * 359.97438 * 26 25 2 28 28 C 1.54634 * 110.38719 * 237.71347 * 2 1 3 29 29 H 1.09007 * 109.47104 * 60.69852 * 1 2 3 30 30 H 1.08996 * 109.47066 * 180.70238 * 1 2 3 31 31 H 1.09004 * 109.47004 * 300.70220 * 1 2 3 32 32 H 0.97001 * 119.99875 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.46934 * 299.73154 * 6 5 3 34 34 H 1.09001 * 109.47040 * 59.72468 * 6 5 3 35 35 H 1.00905 * 111.00067 * 20.67551 * 9 7 6 36 36 H 1.08997 * 109.46774 * 294.68199 * 10 9 7 37 37 H 1.09001 * 109.46761 * 54.67769 * 10 9 7 38 38 H 0.96998 * 119.99816 * 359.97438 * 13 11 10 39 39 H 0.97004 * 120.00401 * 179.97438 * 17 16 14 40 40 H 1.08992 * 115.54652 * 279.76433 * 22 7 6 41 41 H 1.09005 * 117.50158 * 0.02562 * 23 22 7 42 42 H 1.09001 * 117.49728 * 145.02042 * 23 22 7 43 43 H 1.08999 * 117.49549 * 214.98552 * 24 22 7 44 44 H 1.09001 * 117.49632 * 359.97438 * 24 22 7 45 45 H 1.08004 * 124.44634 * 315.27541 * 25 2 1 46 46 H 1.08001 * 124.44595 * 180.02562 * 26 25 2 47 47 H 1.08994 * 110.38507 * 224.75414 * 27 26 25 48 48 H 1.08998 * 110.48047 * 102.42852 * 27 26 25 49 49 H 1.08999 * 111.03722 * 334.47047 * 28 2 1 50 50 H 1.09006 * 111.03835 * 98.40965 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4131 0.0000 4 8 2.7907 1.7866 -0.8879 5 7 1.7036 2.2617 0.9867 6 6 2.2080 3.6371 0.9835 7 6 1.6585 4.3848 2.1999 8 1 2.0526 3.9353 3.1113 9 7 0.1920 4.2988 2.2061 10 6 -0.3241 4.2037 3.5782 11 6 -1.8301 4.2490 3.5527 12 8 -2.4160 4.3509 2.4955 13 7 -2.5260 4.1772 4.7047 14 6 -3.8962 4.2179 4.6815 15 1 -4.4179 4.3078 3.7402 16 6 -4.6136 4.1444 5.8691 17 7 -5.9270 4.1839 5.8470 18 14 -3.7112 3.9896 7.4974 19 1 -3.4320 5.3437 8.0394 20 1 -4.5532 3.2350 8.4602 21 1 -2.4311 3.2670 7.2871 22 6 2.0830 5.8531 2.1306 23 6 1.0148 6.9114 2.4135 24 6 1.5214 6.6976 0.9850 25 6 2.0588 -0.7574 1.1958 26 6 3.0340 -1.5545 0.8535 27 6 3.3179 -1.4620 -0.6278 28 6 2.0687 -0.7742 -1.2254 29 1 -0.3634 0.5030 -0.8962 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 1.1145 1.9628 1.6970 33 1 3.2972 3.6247 1.0261 34 1 1.8859 4.1401 0.0717 35 1 -0.1271 3.5230 1.6452 36 1 0.0038 3.2653 4.0254 37 1 0.0547 5.0388 4.1675 38 1 -2.0575 4.0961 5.5501 39 1 -6.4279 4.1323 6.6761 40 1 3.1003 6.0643 2.4598 41 1 0.0097 6.5615 2.6494 42 1 1.3296 7.8190 2.9285 43 1 2.1692 7.4645 0.5607 44 1 0.8498 6.2069 0.2804 45 1 1.6797 -0.6527 2.2017 46 1 3.5675 -2.1965 1.5388 47 1 3.4438 -2.4576 -1.0531 48 1 4.2066 -0.8575 -0.8088 49 1 1.3445 -1.5116 -1.5716 50 1 2.3445 -0.0916 -2.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266424244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = -43.299400 kcal Electronic energy + Delta-G solvation = -29593.781183 eV Core-core repulsion = 25621.282941 eV Total energy + Delta-G solvation = -3972.498242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71635 -40.48847 -39.44268 -38.44506 -36.22419 -35.95946 -34.68863 -33.70427 -32.63216 -30.65007 -29.79139 -27.91161 -26.15783 -25.42688 -24.81198 -23.21303 -22.60196 -21.27429 -21.09113 -20.48514 -20.29489 -19.80393 -18.25310 -17.66496 -17.47130 -17.04608 -16.90375 -16.52500 -16.36076 -15.79409 -15.74698 -15.51555 -15.21592 -14.84731 -14.70097 -14.40229 -14.25785 -14.06584 -14.04378 -13.55046 -13.29732 -13.13487 -12.96233 -12.87863 -12.77747 -12.70116 -12.39126 -12.33412 -12.16307 -12.12098 -12.07639 -11.95839 -11.74146 -11.48832 -11.15692 -11.04501 -10.79979 -10.38264 -10.21974 -10.18029 -9.86248 -9.35890 -8.39042 -5.99698 1.17073 1.31123 1.37501 1.45880 1.61974 1.99432 2.12945 2.24801 2.68488 2.98766 3.17776 3.35791 3.46481 3.62115 3.72786 3.87268 3.95337 4.04109 4.09718 4.19319 4.27598 4.35910 4.39728 4.42388 4.43592 4.51087 4.54687 4.58411 4.73983 4.75827 4.77647 4.89208 4.92423 4.97985 4.98268 5.09637 5.12476 5.18440 5.29648 5.35992 5.41124 5.50333 5.54549 5.56571 5.90674 5.92163 6.04337 6.33308 6.39419 6.62265 6.91518 7.13900 7.43255 8.00629 8.78713 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.003126 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.798813 B = 8955.511143 C =10670.390020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C 0.530 3.470 4 O -0.575 6.575 5 N -0.720 5.720 6 C 0.123 3.877 7 C 0.113 3.887 8 H 0.086 0.914 9 N -0.677 5.677 10 C 0.060 3.940 11 C 0.451 3.549 12 O -0.611 6.611 13 N -0.591 5.591 14 C -0.325 4.325 15 H 0.054 0.946 16 C -0.016 4.016 17 N -0.937 5.937 18 Si 0.964 3.036 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.227 1.227 22 C -0.138 4.138 23 C -0.172 4.172 24 C -0.173 4.173 25 C -0.172 4.172 26 C -0.144 4.144 27 C -0.105 4.105 28 C -0.111 4.111 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.149 0.851 47 H 0.090 0.910 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.841 -8.957 -3.363 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C 0.317 3.683 4 O -0.454 6.454 5 N -0.372 5.372 6 C -0.001 4.001 7 C 0.004 3.996 8 H 0.104 0.896 9 N -0.312 5.312 10 C -0.072 4.072 11 C 0.239 3.761 12 O -0.495 6.495 13 N -0.233 5.233 14 C -0.455 4.455 15 H 0.072 0.928 16 C -0.214 4.214 17 N -0.578 5.578 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.150 1.150 22 C -0.158 4.158 23 C -0.209 4.209 24 C -0.210 4.210 25 C -0.190 4.190 26 C -0.161 4.161 27 C -0.142 4.142 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.691 -7.930 -4.659 25.414 hybrid contribution -0.662 -0.698 1.214 1.549 sum 23.029 -8.628 -3.445 24.832 Atomic orbital electron populations 1.21826 0.91353 1.03886 1.02386 1.20670 0.97471 0.90805 0.97129 1.20761 0.79492 0.87563 0.80492 1.90649 1.38311 1.78676 1.37804 1.45983 1.51259 1.12249 1.27736 1.21510 0.99414 0.80580 0.98604 1.21272 0.86293 0.94621 0.97429 0.89602 1.59905 1.08672 1.51691 1.10915 1.21765 0.89590 1.03936 0.91903 1.20957 0.90748 0.81081 0.83358 1.90571 1.72501 1.54509 1.31952 1.42021 1.05688 1.67523 1.08084 1.18977 0.81611 1.49689 0.95175 0.92790 1.26109 0.96227 0.96263 1.02833 1.69812 1.07598 1.50477 1.29871 0.85380 0.79612 0.79787 0.76825 1.18434 1.20269 1.15044 1.22342 0.98618 0.90560 1.04238 1.22868 0.99285 0.99583 0.99184 1.22764 1.03598 1.02930 0.91691 1.23159 0.99357 0.98568 0.97943 1.23623 0.96877 0.98406 0.97233 1.21418 0.97865 1.01446 0.93423 1.22503 0.97747 0.98735 0.95931 0.92782 0.89770 0.91917 0.75789 0.90007 0.92279 0.83498 0.89842 0.86792 0.77528 0.91247 0.85364 0.89794 0.88585 0.88235 0.90704 0.83774 0.83325 0.89158 0.91503 0.89008 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.39 71.98 0.60 -1.89 16 2 C -0.06 -1.08 0.74 -52.99 -0.04 -1.12 16 3 C 0.53 12.57 6.54 87.66 0.57 13.14 16 4 O -0.58 -17.77 15.46 -3.02 -0.05 -17.82 16 5 N -0.72 -14.31 4.78 -463.07 -2.22 -16.52 16 6 C 0.12 2.47 5.19 86.38 0.45 2.92 16 7 C 0.11 2.11 2.65 44.92 0.12 2.22 16 8 H 0.09 1.23 7.71 -2.39 -0.02 1.21 16 9 N -0.68 -17.40 4.44 -495.58 -2.20 -19.60 16 10 C 0.06 1.60 5.12 85.55 0.44 2.04 16 11 C 0.45 18.97 7.83 87.66 0.69 19.66 16 12 O -0.61 -32.43 15.89 -3.10 -0.05 -32.48 16 13 N -0.59 -26.43 5.09 -306.99 -1.56 -27.99 16 14 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 15 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 16 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 17 N -0.94 -55.84 13.96 21.66 0.30 -55.54 16 18 Si 0.96 37.56 27.74 68.60 1.90 39.46 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.23 -7.22 6.52 99.48 0.65 -6.58 16 22 C -0.14 -2.58 5.79 -10.79 -0.06 -2.64 16 23 C -0.17 -4.03 9.42 30.62 0.29 -3.75 16 24 C -0.17 -3.88 9.59 30.62 0.29 -3.59 16 25 C -0.17 -2.61 9.37 26.26 0.25 -2.37 16 26 C -0.14 -2.00 10.78 26.26 0.28 -1.72 16 27 C -0.10 -1.64 6.81 30.53 0.21 -1.43 16 28 C -0.11 -2.05 6.03 31.70 0.19 -1.86 16 29 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.14 7.50 -2.39 -0.02 1.12 16 32 H 0.41 6.86 6.91 -92.71 -0.64 6.22 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.47 7.52 -2.39 -0.02 1.45 16 35 H 0.34 9.53 6.70 -89.69 -0.60 8.93 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.11 2.64 7.31 -2.39 -0.02 2.62 16 38 H 0.39 14.23 5.76 -92.71 -0.53 13.69 16 39 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.56 6.03 -2.38 -0.01 2.55 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.04 7.93 -2.39 -0.02 2.03 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 50 H 0.07 1.58 6.95 -2.38 -0.02 1.56 16 Total: -1.00 -78.20 401.31 0.86 -77.34 By element: Atomic # 1 Polarization: 52.49 SS G_CDS: -0.87 Total: 51.62 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.60 Total: 1.53 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.68 Total: -119.65 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.10 Total: -50.30 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.46 kcal Total: -78.20 0.86 -77.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266424244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.038 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds