Wall clock time and date at job start Tue Mar 31 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.64103 * 2 1 4 4 O 1.21281 * 120.00280 * 114.89695 * 3 2 1 5 5 N 1.34777 * 119.99652 * 294.90224 * 3 2 1 6 6 C 1.46508 * 119.99524 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.90887 * 336.24540 * 6 5 3 8 8 C 1.53776 * 113.61485 * 107.50554 * 6 5 3 9 9 C 1.53776 * 87.08445 * 139.97688 * 8 6 5 10 10 H 1.09001 * 113.61280 * 89.11019 * 9 8 6 11 11 N 1.46900 * 113.69344 * 220.00729 * 9 8 6 12 12 C 1.46904 * 110.99847 * 254.06445 * 11 9 8 13 13 C 1.50700 * 109.46828 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00378 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99636 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99854 * 180.02562 * 15 13 12 17 17 H 1.08008 * 120.00389 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00251 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00209 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47414 * 60.00433 * 20 18 16 22 22 H 1.48503 * 109.46925 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47180 * 299.99870 * 20 18 16 24 24 C 1.53779 * 87.08276 * 334.56636 * 9 8 6 25 25 C 1.53017 * 109.64521 * 120.42026 * 2 1 3 26 26 C 1.50073 * 110.15028 * 169.33154 * 25 2 1 27 27 C 1.29447 * 124.07139 * 342.87059 * 26 25 2 28 28 C 1.50071 * 124.07569 * 0.44501 * 27 26 25 29 29 C 1.53006 * 110.15359 * 342.90757 * 28 27 26 30 30 H 1.08993 * 109.47331 * 60.00060 * 1 2 3 31 31 H 1.08999 * 109.46613 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46918 * 299.99861 * 1 2 3 33 33 H 0.96997 * 120.00690 * 359.97438 * 5 3 2 34 34 H 1.09003 * 113.61890 * 25.42882 * 8 6 5 35 35 H 1.09005 * 113.61427 * 254.53020 * 8 6 5 36 36 H 1.00895 * 110.99953 * 130.10754 * 11 9 8 37 37 H 1.09000 * 109.47204 * 299.99876 * 12 11 9 38 38 H 1.09002 * 109.46964 * 59.99530 * 12 11 9 39 39 H 0.96996 * 120.00133 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00564 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.61735 * 139.97828 * 24 9 8 42 42 H 1.09001 * 113.61588 * 270.80530 * 24 9 8 43 43 H 1.08996 * 109.35951 * 289.54264 * 25 2 1 44 44 H 1.09001 * 109.36031 * 49.26319 * 25 2 1 45 45 H 1.07997 * 117.96437 * 162.89195 * 26 25 2 46 46 H 1.08000 * 117.95917 * 180.46531 * 27 26 25 47 47 H 1.09001 * 109.35805 * 103.09939 * 28 27 26 48 48 H 1.09002 * 109.35606 * 222.67917 * 28 27 26 49 49 H 1.09002 * 109.62535 * 289.72024 * 29 28 27 50 50 H 1.09007 * 109.64277 * 169.10176 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.6568 1.8419 0.9527 5 7 1.8002 2.2191 -1.0587 6 6 2.2921 3.5991 -1.0585 7 1 2.4533 3.9920 -0.0545 8 6 3.4792 3.8301 -2.0083 9 6 2.8257 5.1739 -2.3716 10 1 3.1328 5.9972 -1.7266 11 7 2.9123 5.5054 -3.8001 12 6 3.9059 6.5614 -4.0362 13 6 3.9668 6.8734 -5.5092 14 8 3.2533 6.2747 -6.2861 15 7 4.8152 7.8171 -5.9636 16 6 4.8703 8.1013 -7.3036 17 1 4.2343 7.5688 -7.9953 18 6 5.7444 9.0745 -7.7720 19 7 6.5179 9.7229 -6.9305 20 14 5.8200 9.4613 -9.5979 21 1 4.4871 9.9233 -10.0618 22 1 6.8249 10.5283 -9.8367 23 1 6.2088 8.2394 -10.3471 24 6 1.4839 4.5414 -1.9662 25 6 2.0445 -0.7297 1.2427 26 6 3.5222 -0.9654 1.1291 27 6 4.1845 -0.8955 0.0191 28 6 3.5688 -0.5596 -1.3076 29 6 2.0500 -0.7330 -1.2430 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.3043 1.8812 -1.8208 34 1 3.5178 3.1249 -2.8386 35 1 4.4353 3.9340 -1.4952 36 1 2.0097 5.7699 -4.1652 37 1 3.6208 7.4581 -3.4860 38 1 4.8843 6.2222 -3.6961 39 1 5.3861 8.2956 -5.3424 40 1 7.1284 10.4020 -7.2575 41 1 0.8291 5.2195 -1.4190 42 1 0.9763 4.0317 -2.7852 43 1 1.8420 -0.1249 2.1266 44 1 1.5339 -1.6882 1.3362 45 1 4.0668 -1.2089 2.0293 46 1 5.2461 -1.0915 0.0497 47 1 3.8037 0.4736 -1.5636 48 1 3.9761 -1.2207 -2.0726 49 1 1.8052 -1.7929 -1.1726 50 1 1.5942 -0.3072 -2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266689098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:29 Heat of formation + Delta-G solvation = -48.003451 kcal Electronic energy + Delta-G solvation = -28735.866130 eV Core-core repulsion = 24763.163905 eV Total energy + Delta-G solvation = -3972.702225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07094 -39.32520 -38.09778 -37.25925 -34.65252 -33.91541 -33.37213 -32.26496 -31.19537 -30.94379 -27.01200 -26.91275 -25.78952 -24.76941 -23.76789 -23.42459 -22.01308 -20.35012 -19.81376 -19.19050 -18.30141 -17.86640 -16.84078 -16.56766 -16.14270 -15.71545 -15.40701 -15.28236 -15.12609 -14.57777 -14.43042 -14.22217 -14.02775 -13.84717 -13.44305 -13.32683 -13.14961 -12.90111 -12.61026 -12.54152 -12.50331 -12.34235 -12.27927 -12.00390 -11.83269 -11.73766 -11.55291 -11.23140 -11.00155 -10.96313 -10.75641 -10.59903 -10.48206 -10.44326 -10.21159 -9.75567 -9.50101 -9.23174 -9.04494 -8.44774 -8.07976 -7.95939 -6.41440 -3.82422 2.15097 2.50868 2.99061 3.20047 3.25752 3.30095 3.91140 4.11651 4.15642 4.25330 4.33542 4.40126 4.44959 4.49644 4.72278 4.82304 4.85668 4.89915 4.99336 5.05870 5.11813 5.20717 5.26455 5.29608 5.30349 5.35480 5.43700 5.49455 5.58149 5.59306 5.68425 5.70426 5.73416 5.79471 5.83837 5.88117 5.90640 5.97683 6.05047 6.11931 6.28965 6.42917 6.47594 6.77481 7.25640 7.36891 7.54977 7.65559 8.06150 8.09779 8.61384 9.17766 9.54496 10.05889 10.76202 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.001841 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.624882 B =15209.019462 C =15448.271239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C 0.529 3.471 4 O -0.535 6.535 5 N -0.716 5.716 6 C 0.123 3.877 7 H 0.112 0.888 8 C -0.136 4.136 9 C 0.062 3.938 10 H 0.074 0.926 11 N -0.654 5.654 12 C 0.049 3.951 13 C 0.441 3.559 14 O -0.585 6.585 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.147 4.147 25 C -0.068 4.068 26 C -0.142 4.142 27 C -0.161 4.161 28 C -0.098 4.098 29 C -0.107 4.107 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.350 0.650 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 -19.362 17.033 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C 0.315 3.685 4 O -0.411 6.411 5 N -0.367 5.367 6 C 0.017 3.983 7 H 0.130 0.870 8 C -0.176 4.176 9 C -0.049 4.049 10 H 0.091 0.909 11 N -0.286 5.286 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.469 6.469 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.186 4.186 25 C -0.105 4.105 26 C -0.160 4.160 27 C -0.179 4.179 28 C -0.135 4.135 29 C -0.145 4.145 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.871 -19.792 17.015 27.904 hybrid contribution 0.009 1.282 -0.532 1.388 sum -9.862 -18.510 16.483 26.675 Atomic orbital electron populations 1.21834 0.92239 1.03014 1.02681 1.20936 0.96888 0.92574 0.98180 1.20386 0.78881 0.87092 0.82174 1.90685 1.40069 1.75609 1.34758 1.45974 1.57776 1.12641 1.20320 1.22353 0.95445 0.80903 0.99576 0.86969 1.23561 0.97595 0.97617 0.98828 1.22795 0.96031 0.96420 0.89690 0.90851 1.60205 1.12294 1.43643 1.12486 1.21738 0.97438 0.93079 0.96076 1.19823 0.84658 0.83690 0.89223 1.90513 1.45587 1.53311 1.57481 1.41865 1.35577 1.33659 1.08915 1.19650 1.21124 1.18726 0.83458 0.87986 1.25270 0.96051 0.96405 1.00261 1.69603 1.24383 1.25227 1.35093 0.85910 0.78015 0.78099 0.82141 1.19924 1.20985 1.19883 1.23601 0.97009 0.98523 0.99487 1.20337 0.93598 0.99647 0.96898 1.21877 0.95861 1.00527 0.97697 1.21940 0.99592 1.01834 0.94521 1.20510 0.94603 1.02355 0.95983 1.21692 0.95834 1.00946 0.95985 0.91882 0.91243 0.91920 0.76541 0.88810 0.91458 0.82961 0.93816 0.89611 0.77445 0.91812 0.90902 0.88742 0.90042 0.90336 0.87998 0.88099 0.90587 0.90616 0.90501 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.45 37.16 0.31 -0.46 16 2 C -0.08 -0.62 0.65 -155.45 -0.10 -0.73 16 3 C 0.53 5.47 4.73 -10.98 -0.05 5.42 16 4 O -0.54 -7.61 14.90 5.56 0.08 -7.52 16 5 N -0.72 -6.35 5.14 -53.01 -0.27 -6.62 16 6 C 0.12 1.23 4.24 -67.11 -0.28 0.95 16 7 H 0.11 1.26 7.47 -51.93 -0.39 0.88 16 8 C -0.14 -1.58 7.68 -25.92 -0.20 -1.78 16 9 C 0.06 0.73 4.12 -66.90 -0.28 0.46 16 10 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 11 N -0.65 -10.20 6.18 -107.13 -0.66 -10.86 16 12 C 0.05 0.87 6.02 -4.97 -0.03 0.84 16 13 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 14 O -0.58 -15.80 15.78 5.55 0.09 -15.72 16 15 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 16 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 17 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.15 -1.39 7.42 -25.92 -0.19 -1.59 16 25 C -0.07 -0.54 4.54 -28.18 -0.13 -0.67 16 26 C -0.14 -1.30 9.06 -35.90 -0.33 -1.63 16 27 C -0.16 -1.50 9.61 -35.90 -0.35 -1.85 16 28 C -0.10 -0.82 5.59 -28.18 -0.16 -0.98 16 29 C -0.11 -0.71 4.73 -26.53 -0.13 -0.83 16 30 H 0.06 0.30 7.95 -51.93 -0.41 -0.11 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 2.76 7.87 -40.82 -0.32 2.44 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.35 5.58 8.26 -39.29 -0.32 5.25 16 37 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 43 H 0.08 0.75 7.68 -51.93 -0.40 0.35 16 44 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 45 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.08 0.75 7.36 -51.93 -0.38 0.37 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 50 H 0.07 0.39 7.60 -51.93 -0.39 0.00 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.06 402.09 -9.65 -42.70 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -8.36 Total: 14.79 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.23 Total: -0.58 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.27 Total: -55.80 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.06 -9.65 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266689098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.299 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds