Wall clock time and date at job start Tue Mar 31 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.64103 * 2 1 4 4 O 1.21281 * 120.00280 * 114.89695 * 3 2 1 5 5 N 1.34777 * 119.99652 * 294.90224 * 3 2 1 6 6 C 1.46508 * 119.99524 * 179.97438 * 5 3 2 7 7 H 1.09001 * 112.90887 * 336.24540 * 6 5 3 8 8 C 1.53776 * 113.61485 * 107.50554 * 6 5 3 9 9 C 1.53776 * 87.08445 * 139.97688 * 8 6 5 10 10 H 1.09001 * 113.61280 * 89.11019 * 9 8 6 11 11 N 1.46900 * 113.69344 * 220.00729 * 9 8 6 12 12 C 1.46904 * 110.99847 * 254.06445 * 11 9 8 13 13 C 1.50700 * 109.46828 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00378 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99636 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99854 * 180.02562 * 15 13 12 17 17 H 1.08008 * 120.00389 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00251 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00209 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47414 * 60.00433 * 20 18 16 22 22 H 1.48503 * 109.46925 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47180 * 299.99870 * 20 18 16 24 24 C 1.53779 * 87.08276 * 334.56636 * 9 8 6 25 25 C 1.53017 * 109.64521 * 120.42026 * 2 1 3 26 26 C 1.50073 * 110.15028 * 169.33154 * 25 2 1 27 27 C 1.29447 * 124.07139 * 342.87059 * 26 25 2 28 28 C 1.50071 * 124.07569 * 0.44501 * 27 26 25 29 29 C 1.53006 * 110.15359 * 342.90757 * 28 27 26 30 30 H 1.08993 * 109.47331 * 60.00060 * 1 2 3 31 31 H 1.08999 * 109.46613 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46918 * 299.99861 * 1 2 3 33 33 H 0.96997 * 120.00690 * 359.97438 * 5 3 2 34 34 H 1.09003 * 113.61890 * 25.42882 * 8 6 5 35 35 H 1.09005 * 113.61427 * 254.53020 * 8 6 5 36 36 H 1.00895 * 110.99953 * 130.10754 * 11 9 8 37 37 H 1.09000 * 109.47204 * 299.99876 * 12 11 9 38 38 H 1.09002 * 109.46964 * 59.99530 * 12 11 9 39 39 H 0.96996 * 120.00133 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00564 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.61735 * 139.97828 * 24 9 8 42 42 H 1.09001 * 113.61588 * 270.80530 * 24 9 8 43 43 H 1.08996 * 109.35951 * 289.54264 * 25 2 1 44 44 H 1.09001 * 109.36031 * 49.26319 * 25 2 1 45 45 H 1.07997 * 117.96437 * 162.89195 * 26 25 2 46 46 H 1.08000 * 117.95917 * 180.46531 * 27 26 25 47 47 H 1.09001 * 109.35805 * 103.09939 * 28 27 26 48 48 H 1.09002 * 109.35606 * 222.67917 * 28 27 26 49 49 H 1.09002 * 109.62535 * 289.72024 * 29 28 27 50 50 H 1.09007 * 109.64277 * 169.10176 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.6568 1.8419 0.9527 5 7 1.8002 2.2191 -1.0587 6 6 2.2921 3.5991 -1.0585 7 1 2.4533 3.9920 -0.0545 8 6 3.4792 3.8301 -2.0083 9 6 2.8257 5.1739 -2.3716 10 1 3.1328 5.9972 -1.7266 11 7 2.9123 5.5054 -3.8001 12 6 3.9059 6.5614 -4.0362 13 6 3.9668 6.8734 -5.5092 14 8 3.2533 6.2747 -6.2861 15 7 4.8152 7.8171 -5.9636 16 6 4.8703 8.1013 -7.3036 17 1 4.2343 7.5688 -7.9953 18 6 5.7444 9.0745 -7.7720 19 7 6.5179 9.7229 -6.9305 20 14 5.8200 9.4613 -9.5979 21 1 4.4871 9.9233 -10.0618 22 1 6.8249 10.5283 -9.8367 23 1 6.2088 8.2394 -10.3471 24 6 1.4839 4.5414 -1.9662 25 6 2.0445 -0.7297 1.2427 26 6 3.5222 -0.9654 1.1291 27 6 4.1845 -0.8955 0.0191 28 6 3.5688 -0.5596 -1.3076 29 6 2.0500 -0.7330 -1.2430 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.3043 1.8812 -1.8208 34 1 3.5178 3.1249 -2.8386 35 1 4.4353 3.9340 -1.4952 36 1 2.0097 5.7699 -4.1652 37 1 3.6208 7.4581 -3.4860 38 1 4.8843 6.2222 -3.6961 39 1 5.3861 8.2956 -5.3424 40 1 7.1284 10.4020 -7.2575 41 1 0.8291 5.2195 -1.4190 42 1 0.9763 4.0317 -2.7852 43 1 1.8420 -0.1249 2.1266 44 1 1.5339 -1.6882 1.3362 45 1 4.0668 -1.2089 2.0293 46 1 5.2461 -1.0915 0.0497 47 1 3.8037 0.4736 -1.5636 48 1 3.9761 -1.2207 -2.0726 49 1 1.8052 -1.7929 -1.1726 50 1 1.5942 -0.3072 -2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266689098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:28 Heat of formation + Delta-G solvation = -71.385286 kcal Electronic energy + Delta-G solvation = -28736.880043 eV Core-core repulsion = 24763.163905 eV Total energy + Delta-G solvation = -3973.716138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81968 -40.41273 -39.75078 -38.10034 -36.13338 -35.46973 -34.23945 -33.32217 -33.05831 -31.59483 -28.49094 -27.51478 -26.69170 -26.24955 -24.94462 -24.03782 -22.89810 -21.27487 -21.02809 -20.54159 -19.90155 -19.03058 -17.97427 -17.38402 -17.24461 -16.86288 -16.64277 -16.42892 -16.20976 -15.98721 -15.74161 -15.33787 -15.12984 -14.80980 -14.56458 -14.42713 -14.22496 -13.70932 -13.51847 -13.50069 -13.37043 -13.24222 -13.14370 -13.05641 -12.94143 -12.86201 -12.82128 -12.43779 -12.41293 -12.20444 -12.13893 -11.92377 -11.52931 -11.49269 -11.34332 -11.08785 -10.58352 -10.32987 -10.02236 -10.00543 -9.79765 -9.32628 -8.46614 -5.95676 1.39987 1.41785 1.44198 1.52922 1.72127 2.04860 2.22782 2.30493 2.98627 3.20579 3.48834 3.55224 3.57600 3.66411 3.71099 3.76144 3.96501 4.02013 4.13903 4.23593 4.30621 4.39421 4.43626 4.45767 4.55624 4.57419 4.60715 4.72983 4.80996 4.83028 4.85775 4.89605 4.92492 5.00820 5.02257 5.08476 5.13625 5.17525 5.24460 5.28160 5.32770 5.40498 5.62848 5.74816 5.92279 6.08561 6.14016 6.43584 6.59551 6.63736 7.11971 7.33732 7.55816 8.10628 8.70523 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.001841 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.624882 B =15209.019462 C =15448.271239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C 0.525 3.475 4 O -0.580 6.580 5 N -0.706 5.706 6 C 0.130 3.870 7 H 0.102 0.898 8 C -0.137 4.137 9 C 0.058 3.942 10 H 0.083 0.917 11 N -0.664 5.664 12 C 0.064 3.936 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.130 4.130 25 C -0.069 4.069 26 C -0.149 4.149 27 C -0.176 4.176 28 C -0.099 4.099 29 C -0.103 4.103 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.348 0.652 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 -20.038 16.927 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C 0.313 3.687 4 O -0.459 6.459 5 N -0.357 5.357 6 C 0.024 3.976 7 H 0.119 0.881 8 C -0.177 4.177 9 C -0.052 4.052 10 H 0.101 0.899 11 N -0.297 5.297 12 C -0.069 4.069 13 C 0.226 3.774 14 O -0.508 6.508 15 N -0.211 5.211 16 C -0.464 4.464 17 H 0.098 0.902 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.168 4.168 25 C -0.106 4.106 26 C -0.168 4.168 27 C -0.194 4.194 28 C -0.136 4.136 29 C -0.140 4.140 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.112 0.888 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.205 -20.475 16.917 28.826 hybrid contribution 0.455 1.452 -0.434 1.582 sum -10.750 -19.023 16.483 27.370 Atomic orbital electron populations 1.21851 0.90250 1.04440 1.02935 1.20957 0.98326 0.90462 0.98404 1.20954 0.77998 0.88183 0.81554 1.90666 1.42137 1.76643 1.36439 1.45885 1.57276 1.12090 1.20473 1.22140 0.94959 0.81752 0.98755 0.88051 1.23528 0.97860 0.97447 0.98816 1.22908 0.98008 0.96685 0.87639 0.89921 1.60183 1.11732 1.42789 1.15009 1.21588 0.98901 0.94843 0.91545 1.20865 0.82902 0.82055 0.91605 1.90480 1.46712 1.54265 1.59368 1.41951 1.36364 1.34491 1.08323 1.19641 1.22189 1.19984 0.84562 0.90193 1.26075 0.95174 0.95662 1.04549 1.69669 1.24461 1.25312 1.36745 0.84970 0.78307 0.78075 0.76875 1.19538 1.19577 1.19722 1.23500 0.95957 0.98056 0.99310 1.20389 0.92982 1.00607 0.96633 1.22079 0.96844 1.00188 0.97642 1.22092 0.99682 1.02319 0.95273 1.20528 0.96198 1.01291 0.95597 1.21728 0.94300 1.01965 0.96044 0.90729 0.89259 0.92611 0.75121 0.89720 0.92411 0.83213 0.91461 0.88469 0.77034 0.91306 0.89283 0.88018 0.91519 0.87936 0.88099 0.88471 0.92535 0.89702 0.88821 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.45 71.98 0.61 -0.54 16 2 C -0.08 -1.05 0.65 -52.79 -0.03 -1.08 16 3 C 0.53 10.47 4.73 87.66 0.41 10.88 16 4 O -0.58 -16.66 14.90 -3.03 -0.05 -16.70 16 5 N -0.71 -11.59 5.14 -440.01 -2.26 -13.85 16 6 C 0.13 2.47 4.24 45.52 0.19 2.66 16 7 H 0.10 2.23 7.47 -2.39 -0.02 2.21 16 8 C -0.14 -3.08 7.68 31.12 0.24 -2.84 16 9 C 0.06 1.29 4.12 45.44 0.19 1.48 16 10 H 0.08 1.73 7.88 -2.39 -0.02 1.71 16 11 N -0.66 -19.98 6.18 -492.85 -3.05 -23.02 16 12 C 0.06 2.18 6.02 85.56 0.52 2.69 16 13 C 0.44 20.80 7.82 87.66 0.69 21.49 16 14 O -0.62 -34.12 15.78 -3.05 -0.05 -34.17 16 15 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 16 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 19 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 20 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C -0.13 -2.17 7.42 31.12 0.23 -1.94 16 25 C -0.07 -1.04 4.54 29.66 0.13 -0.90 16 26 C -0.15 -2.72 9.06 27.04 0.24 -2.48 16 27 C -0.18 -3.27 9.61 27.04 0.26 -3.01 16 28 C -0.10 -1.58 5.59 29.65 0.17 -1.42 16 29 C -0.10 -1.13 4.73 30.73 0.15 -0.98 16 30 H 0.07 0.46 7.95 -2.39 -0.02 0.44 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.41 4.79 7.87 -92.71 -0.73 4.06 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 36 H 0.35 10.70 8.26 -89.70 -0.74 9.96 16 37 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 38 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 40 H 0.28 14.14 8.31 -92.71 -0.77 13.36 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.61 8.12 -2.39 -0.02 1.59 16 43 H 0.07 1.21 7.68 -2.39 -0.02 1.19 16 44 H 0.10 1.02 8.11 -2.39 -0.02 1.00 16 45 H 0.10 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.10 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.06 1.12 7.36 -2.39 -0.02 1.10 16 48 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 50 H 0.09 0.70 7.60 -2.38 -0.02 0.68 16 Total: -1.00 -72.64 402.09 -0.69 -73.33 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -1.24 Total: 44.95 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.27 Total: 5.45 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -6.65 Total: -117.83 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.64 -0.69 -73.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266689098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.940 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds