Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.64093 * 2 1 4 4 O 1.21280 * 119.99872 * 119.58164 * 3 2 1 5 5 N 1.34776 * 120.00009 * 299.57607 * 3 2 1 6 6 C 1.46492 * 120.00001 * 180.02562 * 5 3 2 7 7 H 1.09004 * 112.85103 * 336.19313 * 6 5 3 8 8 C 1.53778 * 113.61792 * 107.50654 * 6 5 3 9 9 C 1.53773 * 87.08297 * 139.98142 * 8 6 5 10 10 H 1.08996 * 113.62083 * 89.11676 * 9 8 6 11 11 N 1.46906 * 113.61267 * 220.02038 * 9 8 6 12 12 C 1.46898 * 110.99942 * 252.49754 * 11 9 8 13 13 C 1.50698 * 109.46990 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00517 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00231 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99739 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99742 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99490 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46841 * 120.00375 * 20 18 16 23 23 H 1.48503 * 109.47069 * 240.00087 * 20 18 16 24 24 C 1.53779 * 113.61346 * 205.00450 * 6 5 3 25 25 C 1.53020 * 109.64248 * 239.57581 * 2 1 3 26 26 C 1.50060 * 110.15249 * 289.75146 * 25 2 1 27 27 C 1.29452 * 124.07388 * 342.87128 * 26 25 2 28 28 C 1.50070 * 124.07339 * 0.72572 * 27 26 25 29 29 C 1.53175 * 110.06164 * 342.43433 * 28 27 26 30 30 H 1.09001 * 109.47499 * 180.42058 * 1 2 3 31 31 H 1.09000 * 109.47327 * 300.42545 * 1 2 3 32 32 H 1.09007 * 109.47022 * 60.42078 * 1 2 3 33 33 H 0.97002 * 119.99838 * 0.02562 * 5 3 2 34 34 H 1.08998 * 113.61406 * 254.52706 * 8 6 5 35 35 H 1.08999 * 113.61396 * 25.42882 * 8 6 5 36 36 H 1.00896 * 111.00406 * 128.54068 * 11 9 8 37 37 H 1.09005 * 109.47179 * 299.99446 * 12 11 9 38 38 H 1.08997 * 109.47559 * 59.99693 * 12 11 9 39 39 H 0.97005 * 120.00092 * 359.97438 * 15 13 12 40 40 H 0.97004 * 120.00064 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.61583 * 334.56340 * 24 6 5 42 42 H 1.08997 * 113.61871 * 105.38539 * 24 6 5 43 43 H 1.09006 * 109.35695 * 169.54513 * 25 2 1 44 44 H 1.09005 * 109.24475 * 49.89497 * 25 2 1 45 45 H 1.07995 * 117.96634 * 162.84610 * 26 25 2 46 46 H 1.08002 * 117.95997 * 180.43936 * 27 26 25 47 47 H 1.09008 * 109.35692 * 102.81449 * 28 27 26 48 48 H 1.08999 * 109.35595 * 222.40096 * 28 27 26 49 49 H 1.09002 * 109.83997 * 290.06104 * 29 28 27 50 50 H 1.09003 * 109.75816 * 169.44857 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7286 1.8162 0.9134 5 7 1.7204 2.2477 -1.0151 6 6 2.2133 3.6272 -1.0154 7 1 2.4511 3.9919 -0.0161 8 6 3.3238 3.8845 -2.0476 9 6 2.6465 5.2374 -2.3224 10 1 3.0039 6.0430 -1.6810 11 7 2.6237 5.6059 -3.7443 12 6 3.5716 6.6933 -4.0216 13 6 3.5197 7.0437 -5.4863 14 8 2.7674 6.4460 -6.2266 15 7 4.3092 8.0212 -5.9738 16 6 4.2624 8.3395 -7.3065 17 1 3.5925 7.8073 -7.9656 18 6 5.0760 9.3477 -7.8089 19 7 5.8907 9.9956 -7.0068 20 14 5.0117 9.7820 -9.6247 21 1 4.0198 8.9125 -10.3067 22 1 4.6122 11.2038 -9.7796 23 1 6.3515 9.5753 -10.2309 24 6 1.3390 4.5935 -1.8319 25 6 2.0443 -0.7298 -1.2427 26 6 1.7697 -2.2007 -1.1292 27 6 1.4812 -2.8010 -0.0191 28 6 1.3657 -2.1073 1.3066 29 6 2.0455 -0.7362 1.2431 30 1 -0.3634 -1.0276 0.0075 31 1 -0.3634 0.5204 0.8861 32 1 -0.3633 0.5073 -0.8938 33 1 1.1666 1.9303 -1.7455 34 1 4.3167 3.9748 -1.6072 35 1 3.2969 3.2021 -2.8971 36 1 1.6913 5.8553 -4.0383 37 1 3.3040 7.5685 -3.4294 38 1 4.5798 6.3721 -3.7599 39 1 4.9106 8.4995 -5.3818 40 1 6.4589 10.6991 -7.3577 41 1 0.7694 4.1050 -2.6225 42 1 0.7285 5.2553 -1.2175 43 1 3.1183 -0.5690 -1.3375 44 1 1.5407 -0.3352 -2.1253 45 1 1.8153 -2.7954 -2.0295 46 1 1.3086 -3.8667 -0.0499 47 1 0.3125 -1.9809 1.5577 48 1 1.8480 -2.7126 2.0742 49 1 3.1260 -0.8618 1.1727 50 1 1.8010 -0.1619 2.1368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266689100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = -48.850388 kcal Electronic energy + Delta-G solvation = -28270.669161 eV Core-core repulsion = 24297.930210 eV Total energy + Delta-G solvation = -3972.738951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98895 -39.42365 -38.21350 -37.70097 -34.65362 -33.89244 -33.07762 -32.04654 -31.20654 -31.04346 -27.55531 -26.91192 -25.79937 -24.72695 -23.97788 -23.41204 -21.89410 -20.45204 -19.73877 -19.14712 -17.89662 -17.71278 -17.41407 -16.85354 -16.06645 -15.64241 -15.42989 -15.30467 -14.99632 -14.86806 -14.53732 -14.42941 -14.08053 -13.80650 -13.51850 -13.38806 -13.35120 -13.13327 -12.59782 -12.54644 -12.50332 -12.31347 -12.10181 -11.98675 -11.75048 -11.56195 -11.30854 -11.24947 -11.11211 -11.03593 -10.92872 -10.65182 -10.61875 -10.34739 -10.22641 -9.77754 -9.52413 -9.38579 -9.16408 -8.45167 -8.08431 -7.96248 -6.42041 -3.82886 1.90613 2.42205 2.94727 3.16050 3.26605 3.33846 3.90729 4.10043 4.13678 4.19435 4.36687 4.38908 4.44680 4.50267 4.69912 4.74345 4.84666 4.87398 4.89217 4.93715 5.08897 5.18132 5.20200 5.24837 5.26082 5.39574 5.43353 5.47584 5.54071 5.56794 5.59403 5.67644 5.70985 5.79935 5.84760 5.87906 5.94095 5.96916 6.03854 6.09871 6.26519 6.28101 6.44463 6.55409 7.24552 7.32440 7.55044 7.64925 8.02735 8.06303 8.60917 9.17609 9.54215 10.05458 10.75738 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.001681 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.982744 B =16653.791753 C =17093.341101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C 0.524 3.476 4 O -0.540 6.540 5 N -0.714 5.714 6 C 0.121 3.879 7 H 0.113 0.887 8 C -0.137 4.137 9 C 0.062 3.938 10 H 0.075 0.925 11 N -0.654 5.654 12 C 0.049 3.951 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.148 4.148 25 C -0.080 4.080 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.093 4.093 29 C -0.095 4.095 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.350 0.650 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -20.779 17.662 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C 0.310 3.690 4 O -0.417 6.417 5 N -0.364 5.364 6 C 0.015 3.985 7 H 0.131 0.869 8 C -0.176 4.176 9 C -0.049 4.049 10 H 0.093 0.907 11 N -0.286 5.286 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.469 6.469 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.187 4.187 25 C -0.117 4.117 26 C -0.168 4.168 27 C -0.174 4.174 28 C -0.130 4.130 29 C -0.132 4.132 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.500 -21.215 17.575 29.141 hybrid contribution -0.178 1.210 -0.623 1.373 sum -9.678 -20.005 16.952 27.950 Atomic orbital electron populations 1.21917 0.92314 1.03325 1.02364 1.20865 0.97406 0.91795 0.98148 1.20538 0.79622 0.87189 0.81601 1.90690 1.37930 1.77097 1.35965 1.45992 1.53659 1.12126 1.24663 1.22387 0.95699 0.80654 0.99714 0.86884 1.23568 0.98017 0.97449 0.98586 1.22799 0.96284 0.96285 0.89541 0.90707 1.60207 1.12159 1.41514 1.14768 1.21743 0.97969 0.92699 0.95933 1.19825 0.84950 0.83592 0.89012 1.90516 1.42486 1.54313 1.59557 1.41880 1.36479 1.31753 1.09946 1.19757 1.21864 1.16740 0.84526 0.87866 1.25269 0.96019 0.96419 1.00280 1.69620 1.24818 1.24111 1.35723 0.85798 0.78158 0.78251 0.82118 1.19227 1.20778 1.20737 1.23618 0.97086 0.98298 0.99697 1.20505 1.01830 0.92998 0.96378 1.21961 1.00994 0.95712 0.98163 1.22071 1.01237 0.99586 0.94555 1.20565 1.01225 0.95611 0.95581 1.21471 1.00602 0.94706 0.96464 0.90768 0.92072 0.92133 0.76418 0.91378 0.88770 0.82941 0.93800 0.89584 0.77451 0.91920 0.88744 0.90843 0.90185 0.90335 0.87537 0.87890 0.90497 0.90831 0.91120 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 7.72 37.15 0.29 -0.57 16 2 C -0.08 -0.60 0.63 -155.44 -0.10 -0.70 16 3 C 0.52 5.42 6.47 -10.98 -0.07 5.35 16 4 O -0.54 -7.67 15.51 5.56 0.09 -7.58 16 5 N -0.71 -6.29 5.16 -53.02 -0.27 -6.56 16 6 C 0.12 1.20 4.24 -67.12 -0.28 0.92 16 7 H 0.11 1.25 7.46 -51.93 -0.39 0.87 16 8 C -0.14 -1.57 7.68 -25.92 -0.20 -1.77 16 9 C 0.06 0.73 4.14 -66.90 -0.28 0.46 16 10 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 11 N -0.65 -10.18 6.18 -107.13 -0.66 -10.84 16 12 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 13 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 14 O -0.58 -15.80 15.78 5.55 0.09 -15.71 16 15 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 20 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.15 -1.39 7.40 -25.92 -0.19 -1.58 16 25 C -0.08 -0.55 4.71 -28.18 -0.13 -0.69 16 26 C -0.15 -0.96 9.41 -35.91 -0.34 -1.30 16 27 C -0.16 -0.96 9.15 -35.90 -0.33 -1.28 16 28 C -0.09 -0.56 5.48 -28.10 -0.15 -0.71 16 29 C -0.09 -0.76 4.36 -26.43 -0.12 -0.87 16 30 H 0.07 0.41 5.66 -51.93 -0.29 0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.31 7.62 -51.93 -0.40 -0.08 16 33 H 0.40 2.72 7.85 -40.82 -0.32 2.40 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.35 5.57 8.24 -39.29 -0.32 5.24 16 37 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 45 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.08 0.40 6.89 -51.92 -0.36 0.04 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 50 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -32.88 400.41 -9.55 -42.43 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -8.21 Total: 14.11 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.26 Total: 0.34 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.27 Total: -55.66 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.88 -9.55 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266689100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.417 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds