Wall clock time and date at job start Tue Mar 31 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.64093 * 2 1 4 4 O 1.21280 * 119.99872 * 119.58164 * 3 2 1 5 5 N 1.34776 * 120.00009 * 299.57607 * 3 2 1 6 6 C 1.46492 * 120.00001 * 180.02562 * 5 3 2 7 7 H 1.09004 * 112.85103 * 336.19313 * 6 5 3 8 8 C 1.53778 * 113.61792 * 107.50654 * 6 5 3 9 9 C 1.53773 * 87.08297 * 139.98142 * 8 6 5 10 10 H 1.08996 * 113.62083 * 89.11676 * 9 8 6 11 11 N 1.46906 * 113.61267 * 220.02038 * 9 8 6 12 12 C 1.46898 * 110.99942 * 252.49754 * 11 9 8 13 13 C 1.50698 * 109.46990 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00517 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00231 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99739 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99742 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99490 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46841 * 120.00375 * 20 18 16 23 23 H 1.48503 * 109.47069 * 240.00087 * 20 18 16 24 24 C 1.53779 * 113.61346 * 205.00450 * 6 5 3 25 25 C 1.53020 * 109.64248 * 239.57581 * 2 1 3 26 26 C 1.50060 * 110.15249 * 289.75146 * 25 2 1 27 27 C 1.29452 * 124.07388 * 342.87128 * 26 25 2 28 28 C 1.50070 * 124.07339 * 0.72572 * 27 26 25 29 29 C 1.53175 * 110.06164 * 342.43433 * 28 27 26 30 30 H 1.09001 * 109.47499 * 180.42058 * 1 2 3 31 31 H 1.09000 * 109.47327 * 300.42545 * 1 2 3 32 32 H 1.09007 * 109.47022 * 60.42078 * 1 2 3 33 33 H 0.97002 * 119.99838 * 0.02562 * 5 3 2 34 34 H 1.08998 * 113.61406 * 254.52706 * 8 6 5 35 35 H 1.08999 * 113.61396 * 25.42882 * 8 6 5 36 36 H 1.00896 * 111.00406 * 128.54068 * 11 9 8 37 37 H 1.09005 * 109.47179 * 299.99446 * 12 11 9 38 38 H 1.08997 * 109.47559 * 59.99693 * 12 11 9 39 39 H 0.97005 * 120.00092 * 359.97438 * 15 13 12 40 40 H 0.97004 * 120.00064 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.61583 * 334.56340 * 24 6 5 42 42 H 1.08997 * 113.61871 * 105.38539 * 24 6 5 43 43 H 1.09006 * 109.35695 * 169.54513 * 25 2 1 44 44 H 1.09005 * 109.24475 * 49.89497 * 25 2 1 45 45 H 1.07995 * 117.96634 * 162.84610 * 26 25 2 46 46 H 1.08002 * 117.95997 * 180.43936 * 27 26 25 47 47 H 1.09008 * 109.35692 * 102.81449 * 28 27 26 48 48 H 1.08999 * 109.35595 * 222.40096 * 28 27 26 49 49 H 1.09002 * 109.83997 * 290.06104 * 29 28 27 50 50 H 1.09003 * 109.75816 * 169.44857 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7286 1.8162 0.9134 5 7 1.7204 2.2477 -1.0151 6 6 2.2133 3.6272 -1.0154 7 1 2.4511 3.9919 -0.0161 8 6 3.3238 3.8845 -2.0476 9 6 2.6465 5.2374 -2.3224 10 1 3.0039 6.0430 -1.6810 11 7 2.6237 5.6059 -3.7443 12 6 3.5716 6.6933 -4.0216 13 6 3.5197 7.0437 -5.4863 14 8 2.7674 6.4460 -6.2266 15 7 4.3092 8.0212 -5.9738 16 6 4.2624 8.3395 -7.3065 17 1 3.5925 7.8073 -7.9656 18 6 5.0760 9.3477 -7.8089 19 7 5.8907 9.9956 -7.0068 20 14 5.0117 9.7820 -9.6247 21 1 4.0198 8.9125 -10.3067 22 1 4.6122 11.2038 -9.7796 23 1 6.3515 9.5753 -10.2309 24 6 1.3390 4.5935 -1.8319 25 6 2.0443 -0.7298 -1.2427 26 6 1.7697 -2.2007 -1.1292 27 6 1.4812 -2.8010 -0.0191 28 6 1.3657 -2.1073 1.3066 29 6 2.0455 -0.7362 1.2431 30 1 -0.3634 -1.0276 0.0075 31 1 -0.3634 0.5204 0.8861 32 1 -0.3633 0.5073 -0.8938 33 1 1.1666 1.9303 -1.7455 34 1 4.3167 3.9748 -1.6072 35 1 3.2969 3.2021 -2.8971 36 1 1.6913 5.8553 -4.0383 37 1 3.3040 7.5685 -3.4294 38 1 4.5798 6.3721 -3.7599 39 1 4.9106 8.4995 -5.3818 40 1 6.4589 10.6991 -7.3577 41 1 0.7694 4.1050 -2.6225 42 1 0.7285 5.2553 -1.2175 43 1 3.1183 -0.5690 -1.3375 44 1 1.5407 -0.3352 -2.1253 45 1 1.8153 -2.7954 -2.0295 46 1 1.3086 -3.8667 -0.0499 47 1 0.3125 -1.9809 1.5577 48 1 1.8480 -2.7126 2.0742 49 1 3.1260 -0.8618 1.1727 50 1 1.8010 -0.1619 2.1368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266689100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:32 Heat of formation + Delta-G solvation = -72.002265 kcal Electronic energy + Delta-G solvation = -28271.673102 eV Core-core repulsion = 24297.930210 eV Total energy + Delta-G solvation = -3973.742892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.73999 -40.43463 -39.81113 -38.60351 -36.13941 -35.47635 -34.02311 -33.25246 -32.74385 -31.62989 -28.47826 -28.07194 -26.69342 -26.22448 -24.95298 -24.17407 -22.72895 -21.32577 -21.07664 -20.43372 -19.89155 -18.38691 -18.00896 -17.95174 -17.38923 -16.86660 -16.50354 -16.38480 -16.22970 -15.85619 -15.70957 -15.57677 -15.16245 -15.08870 -14.63678 -14.34239 -14.18717 -13.97680 -13.79151 -13.51982 -13.37257 -13.26408 -13.13099 -13.07379 -12.87724 -12.79333 -12.59864 -12.41462 -12.22372 -12.12502 -11.96242 -11.88931 -11.61235 -11.53476 -11.50397 -11.22063 -10.59607 -10.33241 -10.02079 -10.00614 -9.86120 -9.32403 -8.47115 -5.95987 1.36642 1.41950 1.43361 1.56264 1.60797 2.04728 2.17522 2.29772 2.98314 3.20309 3.47189 3.51339 3.56965 3.63686 3.68403 3.83256 3.96285 4.01519 4.14337 4.21965 4.30730 4.36775 4.40922 4.45763 4.54691 4.56326 4.60735 4.69340 4.72502 4.80848 4.84893 4.91972 4.93370 5.01212 5.04457 5.07369 5.08170 5.16300 5.21485 5.28125 5.39909 5.40909 5.58836 5.79680 5.92466 6.07878 6.14260 6.43405 6.56668 6.59562 7.12132 7.24645 7.55846 8.10707 8.70480 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.001681 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.982744 B =16653.791753 C =17093.341101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C 0.521 3.479 4 O -0.584 6.584 5 N -0.703 5.703 6 C 0.127 3.873 7 H 0.104 0.896 8 C -0.138 4.138 9 C 0.058 3.942 10 H 0.086 0.914 11 N -0.665 5.665 12 C 0.064 3.936 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.080 0.920 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.159 4.159 27 C -0.157 4.157 28 C -0.090 4.090 29 C -0.095 4.095 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.348 0.652 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.051 0.949 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -21.402 17.762 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C 0.309 3.691 4 O -0.464 6.464 5 N -0.354 5.354 6 C 0.021 3.979 7 H 0.122 0.878 8 C -0.177 4.177 9 C -0.052 4.052 10 H 0.103 0.897 11 N -0.298 5.298 12 C -0.069 4.069 13 C 0.226 3.774 14 O -0.509 6.509 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.098 0.902 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.169 4.169 25 C -0.116 4.116 26 C -0.177 4.177 27 C -0.175 4.175 28 C -0.126 4.126 29 C -0.133 4.133 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.168 0.832 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.070 0.930 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.594 -21.842 17.683 30.033 hybrid contribution 0.182 1.369 -0.603 1.507 sum -10.412 -20.474 17.080 28.623 Atomic orbital electron populations 1.21916 0.90640 1.04152 1.02838 1.20854 0.98582 0.89903 0.98368 1.21054 0.78816 0.88209 0.81017 1.90670 1.39970 1.78050 1.37675 1.45908 1.53205 1.11605 1.24662 1.22203 0.95375 0.81399 0.98882 0.87801 1.23544 0.98238 0.97305 0.98659 1.22913 0.98182 0.96535 0.87568 0.89665 1.60186 1.11610 1.40637 1.17375 1.21595 0.99376 0.94413 0.91489 1.20880 0.83193 0.82018 0.91345 1.90483 1.43718 1.55265 1.61415 1.41958 1.37218 1.32587 1.09363 1.19720 1.22884 1.18007 0.85731 0.90230 1.26060 0.95159 0.95704 1.04438 1.69680 1.24909 1.24237 1.37348 0.84855 0.78284 0.78176 0.76920 1.19716 1.19561 1.19695 1.23519 0.96115 0.97759 0.99554 1.20501 1.00990 0.93687 0.96416 1.22029 1.01544 0.95295 0.98838 1.22225 1.00689 1.00311 0.94230 1.20568 1.01755 0.94292 0.96030 1.21445 0.99694 0.95990 0.96210 0.89733 0.92412 0.90888 0.74986 0.92107 0.89699 0.83211 0.91404 0.88373 0.77019 0.91315 0.88067 0.89199 0.91750 0.88993 0.86528 0.86474 0.89245 0.90111 0.93032 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.72 71.98 0.56 -0.86 16 2 C -0.07 -1.08 0.63 -52.79 -0.03 -1.11 16 3 C 0.52 10.65 6.47 87.66 0.57 11.21 16 4 O -0.58 -16.97 15.51 -3.03 -0.05 -17.02 16 5 N -0.70 -11.65 5.16 -440.05 -2.27 -13.92 16 6 C 0.13 2.39 4.24 45.52 0.19 2.59 16 7 H 0.10 2.23 7.46 -2.38 -0.02 2.22 16 8 C -0.14 -3.06 7.68 31.12 0.24 -2.82 16 9 C 0.06 1.28 4.14 45.44 0.19 1.47 16 10 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 11 N -0.67 -19.93 6.18 -492.86 -3.05 -22.98 16 12 C 0.06 2.16 6.01 85.56 0.51 2.68 16 13 C 0.44 20.76 7.82 87.66 0.69 21.45 16 14 O -0.62 -34.19 15.78 -3.06 -0.05 -34.24 16 15 N -0.57 -29.55 5.29 -306.99 -1.62 -31.17 16 16 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 17 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 18 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 19 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 20 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C -0.13 -2.18 7.40 31.12 0.23 -1.95 16 25 C -0.08 -1.01 4.71 29.65 0.14 -0.87 16 26 C -0.16 -1.79 9.41 27.03 0.25 -1.53 16 27 C -0.16 -1.62 9.15 27.03 0.25 -1.38 16 28 C -0.09 -0.96 5.48 29.71 0.16 -0.79 16 29 C -0.10 -1.52 4.36 30.79 0.13 -1.39 16 30 H 0.08 0.72 5.66 -2.39 -0.01 0.71 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.57 7.62 -2.38 -0.02 0.55 16 33 H 0.41 4.86 7.85 -92.71 -0.73 4.13 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.35 10.68 8.24 -89.70 -0.74 9.94 16 37 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 40 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.10 1.59 8.12 -2.39 -0.02 1.58 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 44 H 0.09 0.91 7.85 -2.38 -0.02 0.89 16 45 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 46 H 0.12 0.91 8.06 -2.91 -0.02 0.88 16 47 H 0.09 0.75 6.89 -2.38 -0.02 0.73 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 50 H 0.06 1.13 7.89 -2.39 -0.02 1.11 16 Total: -1.00 -71.91 400.41 -0.60 -72.51 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -1.23 Total: 43.21 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.36 Total: 8.21 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -6.66 Total: -117.64 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.10 Total: -51.25 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.91 -0.60 -72.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266689100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.505 kcal (2) G-P(sol) polarization free energy of solvation -71.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds