Wall clock time and date at job start Tue Mar 31 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51263 * 120.84875 * 2 1 4 4 C 1.53227 * 108.53822 * 231.32953 * 3 2 1 5 5 C 1.52960 * 109.40387 * 305.37403 * 4 3 2 6 6 C 1.50704 * 109.41177 * 183.70331 * 5 4 3 7 7 O 1.21276 * 120.00313 * 359.85704 * 6 5 4 8 8 N 1.34785 * 119.99708 * 179.85692 * 6 5 4 9 9 C 1.47421 * 125.64788 * 0.04033 * 8 6 5 10 10 C 1.54905 * 104.83360 * 204.08972 * 9 8 6 11 11 C 1.55159 * 101.58152 * 322.99517 * 10 9 8 12 12 H 1.08999 * 110.87308 * 277.06403 * 11 10 9 13 13 N 1.46906 * 110.71934 * 153.86271 * 11 10 9 14 14 C 1.46898 * 110.99888 * 91.47686 * 13 11 10 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99549 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00062 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99698 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00123 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47454 * 89.99743 * 22 20 18 24 24 H 1.48497 * 109.47239 * 210.00393 * 22 20 18 25 25 H 1.48506 * 109.46789 * 329.99864 * 22 20 18 26 26 C 1.47025 * 125.64657 * 179.97438 * 8 6 5 27 27 C 1.52961 * 109.76031 * 63.63489 * 5 4 3 28 28 C 1.51272 * 120.84892 * 179.97438 * 2 1 3 29 29 H 1.07996 * 120.00379 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00069 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.62878 * 111.61502 * 3 2 1 32 32 H 1.09007 * 109.62806 * 351.04558 * 3 2 1 33 33 H 1.09000 * 109.48641 * 185.39156 * 4 3 2 34 34 H 1.09006 * 109.48776 * 65.35112 * 4 3 2 35 35 H 1.09001 * 109.41197 * 303.56078 * 5 4 3 36 36 H 1.08997 * 110.36920 * 322.93407 * 9 8 6 37 37 H 1.09005 * 110.36196 * 85.14223 * 9 8 6 38 38 H 1.08994 * 111.01059 * 204.91537 * 10 9 8 39 39 H 1.09004 * 111.00136 * 81.06310 * 10 9 8 40 40 H 1.00902 * 110.99923 * 215.43627 * 13 11 10 41 41 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 42 42 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 43 43 H 0.97003 * 120.00664 * 0.02562 * 17 15 14 44 44 H 0.97005 * 120.00698 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.87832 * 59.55816 * 26 8 6 46 46 H 1.08995 * 110.00711 * 298.47081 * 26 8 6 47 47 H 1.09000 * 109.48570 * 56.34448 * 27 5 4 48 48 H 1.09003 * 109.47936 * 176.38788 * 27 5 4 49 49 H 1.08994 * 109.62578 * 248.38192 * 28 2 1 50 50 H 1.08995 * 109.62652 * 8.76881 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0856 1.2986 0.0000 4 6 3.1148 1.2514 -1.1342 5 6 3.9810 -0.0001 -0.9827 6 6 5.0510 -0.0002 -2.0440 7 8 5.1121 0.9095 -2.8436 8 7 5.9400 -1.0115 -2.1044 9 6 5.9803 -2.1753 -1.2004 10 6 7.4467 -2.6713 -1.2576 11 6 7.7981 -2.4331 -2.7500 12 1 7.4472 -3.2593 -3.3683 13 7 9.2443 -2.2379 -2.9186 14 6 9.9194 -3.5138 -3.1914 15 6 11.3980 -3.2742 -3.3574 16 8 11.8452 -2.1511 -3.2588 17 7 12.2233 -4.3080 -3.6156 18 6 13.5683 -4.0900 -3.7672 19 1 13.9666 -3.0899 -3.6794 20 6 14.4192 -5.1559 -4.0328 21 7 13.9348 -6.3727 -4.1391 22 14 16.2520 -4.8590 -4.2387 23 1 16.9235 -4.9743 -2.9192 24 1 16.8153 -5.8685 -5.1708 25 1 16.4741 -3.4980 -4.7899 26 6 7.0294 -1.1372 -3.0837 27 6 3.1137 -1.2509 -1.1350 28 6 2.0857 -1.2987 0.0006 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.5980 1.4191 0.9544 32 1 1.4027 2.1331 -0.1598 33 1 3.7466 2.1385 -1.0891 34 1 2.5977 1.2216 -2.0934 35 1 4.4477 -0.0006 0.0023 36 1 5.7203 -1.8761 -0.1850 37 1 5.3012 -2.9522 -1.5518 38 1 7.5113 -3.7296 -1.0051 39 1 8.0862 -2.0760 -0.6058 40 1 9.4360 -1.5647 -3.6454 41 1 9.7538 -4.1977 -2.3590 42 1 9.5167 -3.9498 -4.1055 43 1 11.8656 -5.2062 -3.6948 44 1 14.5288 -7.1169 -4.3241 45 1 7.6977 -0.2796 -3.0068 46 1 6.6194 -1.1983 -4.0918 47 1 2.5966 -1.2201 -2.0941 48 1 3.7448 -2.1385 -1.0903 49 1 2.5981 -1.4186 0.9550 50 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267018637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:49 Heat of formation + Delta-G solvation = -61.999876 kcal Electronic energy + Delta-G solvation = -28453.442486 eV Core-core repulsion = 24480.133331 eV Total energy + Delta-G solvation = -3973.309156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.73249 -38.85342 -38.16914 -37.46609 -34.83500 -33.84419 -33.21296 -31.53217 -31.25694 -30.63363 -29.15355 -27.22699 -25.92962 -24.04271 -23.72174 -23.28511 -21.74231 -20.65521 -19.60836 -19.25126 -18.77441 -17.92240 -17.30654 -16.58246 -16.10052 -15.79557 -15.36334 -15.27251 -15.22571 -14.68431 -14.43378 -14.06507 -14.03929 -13.78702 -13.75762 -13.62263 -13.47452 -13.11195 -12.77533 -12.69399 -12.49826 -12.33662 -12.01512 -11.82218 -11.72080 -11.64717 -11.49392 -11.40587 -11.25810 -11.10090 -11.00942 -10.87791 -10.54346 -10.40610 -10.23685 -9.92605 -9.53044 -9.40572 -8.85332 -8.50596 -8.17032 -7.98565 -6.43777 -3.84681 1.85727 2.44563 2.71233 3.16849 3.25709 3.31631 3.87866 4.03824 4.07168 4.14860 4.26604 4.30741 4.44259 4.52841 4.60443 4.68201 4.81717 4.90024 4.95669 5.00198 5.01929 5.08726 5.15266 5.19970 5.26272 5.30080 5.34517 5.36600 5.46660 5.51971 5.59726 5.64677 5.66103 5.68130 5.75340 5.79876 5.81068 5.91482 5.93179 6.03039 6.11716 6.24969 6.26006 6.47879 7.13165 7.29486 7.53422 7.54372 7.97526 8.04023 8.58731 9.15842 9.51695 10.02986 10.73853 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001698 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.146876 B =16483.835332 C =16905.916647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.096 4.096 5 C -0.101 4.101 6 C 0.531 3.469 7 O -0.540 6.540 8 N -0.614 5.614 9 C 0.098 3.902 10 C -0.124 4.124 11 C 0.074 3.926 12 H 0.062 0.938 13 N -0.657 5.657 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.105 3.895 27 C -0.115 4.115 28 C -0.084 4.084 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.672 5.658 8.887 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.134 4.134 5 C -0.122 4.122 6 C 0.320 3.680 7 O -0.416 6.416 8 N -0.349 5.349 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.037 4.037 12 H 0.079 0.921 13 N -0.290 5.290 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.018 4.018 27 C -0.153 4.153 28 C -0.121 4.121 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.137 6.781 9.127 28.503 hybrid contribution 0.469 -0.861 -1.050 1.436 sum -25.668 5.920 8.078 27.553 Atomic orbital electron populations 1.23637 0.94999 1.01849 1.03015 1.21995 0.95107 0.95869 0.99092 1.20849 0.97569 0.94865 0.99087 1.21360 0.96513 0.96544 0.98953 1.21273 0.94662 0.97783 0.98470 1.20371 0.81456 0.80468 0.85693 1.90711 1.73319 1.35380 1.42209 1.48400 1.30814 1.22744 1.32895 1.22512 0.98072 0.87742 0.94207 1.22903 0.94112 1.02278 0.97005 1.22563 0.88684 0.95707 0.96723 0.92054 1.60166 1.05590 1.10461 1.52824 1.21727 0.94320 0.91730 1.00345 1.19777 0.87265 0.85969 0.84469 1.90534 1.77133 1.23036 1.55957 1.41858 1.07415 1.08617 1.62069 1.19713 0.81909 0.95951 1.45390 0.87898 1.25257 1.00694 0.94669 0.97265 1.69607 1.36464 0.99060 1.49164 0.85853 0.81989 0.78241 0.78183 1.20377 1.20934 1.19415 1.22068 0.88842 0.98662 0.92209 1.21708 0.97197 0.96786 0.99576 1.20808 0.97448 0.94994 0.98844 0.88488 0.88500 0.90755 0.90916 0.90724 0.91099 0.88437 0.90314 0.91026 0.89844 0.89146 0.82630 0.89495 0.93668 0.77462 0.91863 0.90175 0.91409 0.91231 0.90391 0.90591 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 13.99 29.01 0.41 -0.80 16 2 C -0.12 -0.78 5.35 -100.51 -0.54 -1.32 16 3 C -0.09 -0.56 6.03 -27.49 -0.17 -0.73 16 4 C -0.10 -0.80 4.53 -26.63 -0.12 -0.92 16 5 C -0.10 -0.82 1.78 -91.81 -0.16 -0.98 16 6 C 0.53 6.23 7.21 -10.98 -0.08 6.15 16 7 O -0.54 -8.48 16.27 5.56 0.09 -8.39 16 8 N -0.61 -6.52 3.32 -170.52 -0.57 -7.08 16 9 C 0.10 0.75 5.13 -2.53 -0.01 0.73 16 10 C -0.12 -1.18 6.77 -24.58 -0.17 -1.35 16 11 C 0.07 0.84 3.28 -65.88 -0.22 0.63 16 12 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 13 N -0.66 -10.02 5.97 -106.05 -0.63 -10.65 16 14 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 15 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 16 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.25 13.05 55.49 0.72 -23.52 16 22 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.11 1.24 6.38 -3.06 -0.02 1.22 16 27 C -0.12 -0.75 5.06 -26.62 -0.13 -0.88 16 28 C -0.08 -0.46 6.04 -27.47 -0.17 -0.63 16 29 H 0.10 0.53 7.92 -52.49 -0.42 0.12 16 30 H 0.10 0.51 7.92 -52.48 -0.42 0.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 33 H 0.07 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.67 7.85 -51.93 -0.41 0.27 16 36 H 0.08 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.07 0.44 7.00 -51.93 -0.36 0.08 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.35 5.70 8.02 -39.29 -0.32 5.38 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.43 4.88 -51.93 -0.25 0.18 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -33.04 398.17 -9.35 -42.39 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.24 Total: 10.94 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.73 Total: 4.08 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.53 Total: -55.35 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.18 Total: -23.97 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.04 -9.35 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267018637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds