Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51263 * 120.84875 * 2 1 4 4 C 1.53227 * 108.53822 * 231.32953 * 3 2 1 5 5 C 1.52960 * 109.40387 * 305.37403 * 4 3 2 6 6 C 1.50704 * 109.41177 * 183.70331 * 5 4 3 7 7 O 1.21276 * 120.00313 * 359.85704 * 6 5 4 8 8 N 1.34785 * 119.99708 * 179.85692 * 6 5 4 9 9 C 1.47421 * 125.64788 * 0.04033 * 8 6 5 10 10 C 1.54905 * 104.83360 * 204.08972 * 9 8 6 11 11 C 1.55159 * 101.58152 * 322.99517 * 10 9 8 12 12 H 1.08999 * 110.87308 * 277.06403 * 11 10 9 13 13 N 1.46906 * 110.71934 * 153.86271 * 11 10 9 14 14 C 1.46898 * 110.99888 * 91.47686 * 13 11 10 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99549 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00062 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99698 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00123 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47454 * 89.99743 * 22 20 18 24 24 H 1.48497 * 109.47239 * 210.00393 * 22 20 18 25 25 H 1.48506 * 109.46789 * 329.99864 * 22 20 18 26 26 C 1.47025 * 125.64657 * 179.97438 * 8 6 5 27 27 C 1.52961 * 109.76031 * 63.63489 * 5 4 3 28 28 C 1.51272 * 120.84892 * 179.97438 * 2 1 3 29 29 H 1.07996 * 120.00379 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00069 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.62878 * 111.61502 * 3 2 1 32 32 H 1.09007 * 109.62806 * 351.04558 * 3 2 1 33 33 H 1.09000 * 109.48641 * 185.39156 * 4 3 2 34 34 H 1.09006 * 109.48776 * 65.35112 * 4 3 2 35 35 H 1.09001 * 109.41197 * 303.56078 * 5 4 3 36 36 H 1.08997 * 110.36920 * 322.93407 * 9 8 6 37 37 H 1.09005 * 110.36196 * 85.14223 * 9 8 6 38 38 H 1.08994 * 111.01059 * 204.91537 * 10 9 8 39 39 H 1.09004 * 111.00136 * 81.06310 * 10 9 8 40 40 H 1.00902 * 110.99923 * 215.43627 * 13 11 10 41 41 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 42 42 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 43 43 H 0.97003 * 120.00664 * 0.02562 * 17 15 14 44 44 H 0.97005 * 120.00698 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.87832 * 59.55816 * 26 8 6 46 46 H 1.08995 * 110.00711 * 298.47081 * 26 8 6 47 47 H 1.09000 * 109.48570 * 56.34448 * 27 5 4 48 48 H 1.09003 * 109.47936 * 176.38788 * 27 5 4 49 49 H 1.08994 * 109.62578 * 248.38192 * 28 2 1 50 50 H 1.08995 * 109.62652 * 8.76881 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0856 1.2986 0.0000 4 6 3.1148 1.2514 -1.1342 5 6 3.9810 -0.0001 -0.9827 6 6 5.0510 -0.0002 -2.0440 7 8 5.1121 0.9095 -2.8436 8 7 5.9400 -1.0115 -2.1044 9 6 5.9803 -2.1753 -1.2004 10 6 7.4467 -2.6713 -1.2576 11 6 7.7981 -2.4331 -2.7500 12 1 7.4472 -3.2593 -3.3683 13 7 9.2443 -2.2379 -2.9186 14 6 9.9194 -3.5138 -3.1914 15 6 11.3980 -3.2742 -3.3574 16 8 11.8452 -2.1511 -3.2588 17 7 12.2233 -4.3080 -3.6156 18 6 13.5683 -4.0900 -3.7672 19 1 13.9666 -3.0899 -3.6794 20 6 14.4192 -5.1559 -4.0328 21 7 13.9348 -6.3727 -4.1391 22 14 16.2520 -4.8590 -4.2387 23 1 16.9235 -4.9743 -2.9192 24 1 16.8153 -5.8685 -5.1708 25 1 16.4741 -3.4980 -4.7899 26 6 7.0294 -1.1372 -3.0837 27 6 3.1137 -1.2509 -1.1350 28 6 2.0857 -1.2987 0.0006 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.5980 1.4191 0.9544 32 1 1.4027 2.1331 -0.1598 33 1 3.7466 2.1385 -1.0891 34 1 2.5977 1.2216 -2.0934 35 1 4.4477 -0.0006 0.0023 36 1 5.7203 -1.8761 -0.1850 37 1 5.3012 -2.9522 -1.5518 38 1 7.5113 -3.7296 -1.0051 39 1 8.0862 -2.0760 -0.6058 40 1 9.4360 -1.5647 -3.6454 41 1 9.7538 -4.1977 -2.3590 42 1 9.5167 -3.9498 -4.1055 43 1 11.8656 -5.2062 -3.6948 44 1 14.5288 -7.1169 -4.3241 45 1 7.6977 -0.2796 -3.0068 46 1 6.6194 -1.1983 -4.0918 47 1 2.5966 -1.2201 -2.0941 48 1 3.7448 -2.1385 -1.0903 49 1 2.5981 -1.4186 0.9550 50 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267018637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = -84.906263 kcal Electronic energy + Delta-G solvation = -28454.435782 eV Core-core repulsion = 24480.133331 eV Total energy + Delta-G solvation = -3974.302451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55664 -40.21306 -39.30555 -38.39602 -36.22473 -35.59129 -33.85268 -33.26191 -32.09560 -31.53248 -30.09512 -28.17799 -27.23673 -25.57839 -24.52405 -23.87540 -22.38764 -21.57096 -21.10448 -20.32459 -19.90276 -19.29140 -18.19563 -17.70343 -17.43742 -16.83371 -16.66463 -16.36995 -16.08548 -15.77333 -15.72357 -15.32919 -15.15840 -14.67522 -14.60984 -14.44653 -14.33515 -14.14262 -13.93600 -13.49207 -13.45813 -13.42268 -13.30547 -13.12144 -12.84531 -12.54241 -12.49937 -12.41534 -12.31455 -12.15209 -12.11411 -11.96169 -11.83691 -11.52698 -11.50634 -11.06874 -10.81688 -10.34796 -10.01178 -9.87017 -9.73103 -9.38658 -8.46641 -5.95189 1.38168 1.40033 1.42310 1.54550 1.56299 1.87353 2.05940 2.29741 2.91925 3.20886 3.29309 3.51134 3.57943 3.69853 3.70979 3.81147 4.09277 4.12473 4.15409 4.25313 4.29953 4.33345 4.35008 4.39915 4.48073 4.51507 4.59670 4.63101 4.66122 4.72651 4.79330 4.84101 4.86620 5.00857 5.04580 5.07533 5.14431 5.18084 5.22267 5.24023 5.31014 5.35684 5.41389 5.81059 5.88978 6.02858 6.09985 6.28451 6.47668 6.60600 7.08649 7.13168 7.56785 8.12544 8.70532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001698 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.146876 B =16483.835332 C =16905.916647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.094 4.094 5 C -0.093 4.093 6 C 0.524 3.476 7 O -0.591 6.591 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.121 4.121 11 C 0.078 3.922 12 H 0.082 0.918 13 N -0.673 5.673 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C 0.106 3.894 27 C -0.109 4.109 28 C -0.080 4.080 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.343 0.657 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.105 3.561 10.342 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.132 4.132 5 C -0.114 4.114 6 C 0.314 3.686 7 O -0.472 6.472 8 N -0.347 5.347 9 C -0.023 4.023 10 C -0.160 4.160 11 C -0.032 4.032 12 H 0.100 0.900 13 N -0.306 5.306 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.018 4.018 27 C -0.146 4.146 28 C -0.117 4.117 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.600 4.628 10.611 29.930 hybrid contribution 0.875 -0.151 -1.517 1.757 sum -26.726 4.477 9.095 28.583 Atomic orbital electron populations 1.23789 0.95076 1.02434 1.02443 1.22123 0.95390 0.96182 0.99607 1.20812 0.97103 0.95387 0.98575 1.21303 0.96708 0.96259 0.98928 1.21302 0.93737 0.98516 0.97804 1.21109 0.81932 0.79765 0.85785 1.90684 1.74737 1.37382 1.44369 1.48514 1.29879 1.23386 1.32882 1.22765 0.97401 0.87110 0.95024 1.22907 0.94840 1.03388 0.94822 1.22635 0.86101 0.95772 0.98650 0.89981 1.60190 1.08124 1.09657 1.52624 1.21586 0.89460 0.92862 1.02496 1.20932 0.89815 0.84779 0.82117 1.90504 1.78720 1.24770 1.57285 1.41913 1.06915 1.09328 1.62752 1.19654 0.83756 0.95347 1.47767 0.90508 1.25992 1.04495 0.94261 0.96304 1.69657 1.37889 0.99487 1.48860 0.84954 0.77057 0.77991 0.78487 1.19630 1.19487 1.19996 1.21941 0.89030 0.98092 0.92707 1.21681 0.97257 0.96216 0.99455 1.20827 0.97223 0.94701 0.98930 0.88376 0.87598 0.89697 0.90775 0.92389 0.93014 0.86463 0.87911 0.88261 0.87617 0.91123 0.83729 0.87053 0.91182 0.76838 0.91275 0.92880 0.91720 0.92657 0.88750 0.89116 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 13.99 67.78 0.95 -1.12 16 2 C -0.13 -1.45 5.35 -16.13 -0.09 -1.53 16 3 C -0.08 -0.96 6.03 30.10 0.18 -0.78 16 4 C -0.09 -1.57 4.53 30.66 0.14 -1.43 16 5 C -0.09 -1.38 1.78 -11.57 -0.02 -1.40 16 6 C 0.52 12.16 7.21 87.66 0.63 12.80 16 7 O -0.59 -19.49 16.27 -3.02 -0.05 -19.54 16 8 N -0.61 -12.26 3.32 -811.80 -2.70 -14.96 16 9 C 0.10 1.16 5.13 86.85 0.45 1.61 16 10 C -0.12 -1.95 6.77 31.99 0.22 -1.73 16 11 C 0.08 1.64 3.28 46.10 0.15 1.79 16 12 H 0.08 1.43 7.82 -2.39 -0.02 1.42 16 13 N -0.67 -20.07 5.97 -489.44 -2.92 -22.99 16 14 C 0.07 2.16 6.03 85.56 0.52 2.68 16 15 C 0.44 20.28 7.82 87.66 0.69 20.97 16 16 O -0.63 -34.67 15.78 -3.05 -0.05 -34.72 16 17 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 18 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 22 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 C 0.11 2.49 6.38 86.73 0.55 3.04 16 27 C -0.11 -1.13 5.06 30.67 0.16 -0.98 16 28 C -0.08 -0.63 6.04 30.12 0.18 -0.45 16 29 H 0.10 0.95 7.92 -2.91 -0.02 0.93 16 30 H 0.11 0.88 7.92 -2.91 -0.02 0.86 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.84 7.89 -2.38 -0.02 0.82 16 33 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 34 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.12 1.30 7.85 -2.39 -0.02 1.28 16 36 H 0.10 0.79 7.39 -2.39 -0.02 0.77 16 37 H 0.10 0.72 7.00 -2.38 -0.02 0.70 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.34 11.32 8.02 -89.69 -0.72 10.60 16 41 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 43 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 44 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 45 H 0.05 1.53 7.90 -2.39 -0.02 1.51 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.09 0.67 4.88 -2.39 -0.01 0.65 16 49 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.08 0.52 7.89 -2.39 -0.02 0.50 16 Total: -1.00 -74.74 398.17 0.45 -74.29 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.50 Total: 36.83 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.98 Total: 15.22 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -6.96 Total: -116.81 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -0.10 Total: -54.26 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.74 0.45 -74.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267018637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.613 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds