Wall clock time and date at job start Tue Mar 31 2020 19:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35924 * 116.99829 * 2 1 4 4 C 1.38847 * 120.40816 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00190 * 179.72002 * 4 3 2 6 6 C 1.31688 * 121.94199 * 0.27346 * 5 4 3 7 7 C 1.39524 * 120.68755 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.52785 * 179.97438 * 7 6 5 9 9 O 1.21559 * 119.99866 * 173.96392 * 8 7 6 10 10 N 1.34773 * 120.00223 * 353.96689 * 8 7 6 11 11 C 1.46501 * 120.00100 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47052 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47256 * 180.02562 * 12 11 10 14 14 N 1.46492 * 109.47392 * 179.97438 * 13 12 11 15 15 C 1.36940 * 119.99868 * 90.00130 * 14 13 12 16 16 H 1.08000 * 120.00548 * 218.10056 * 15 14 13 17 17 C 1.38816 * 119.99851 * 38.09991 * 15 14 13 18 18 N 1.31621 * 119.99939 * 19.10164 * 17 15 14 19 19 Si 1.86800 * 120.00238 * 199.09884 * 17 15 14 20 20 H 1.48494 * 109.47021 * 89.99753 * 19 17 15 21 21 H 1.48497 * 109.47144 * 210.00219 * 19 17 15 22 22 H 1.48505 * 109.46957 * 329.99976 * 19 17 15 23 23 C 1.46498 * 120.00739 * 270.00324 * 14 13 12 24 24 C 1.52998 * 109.47193 * 121.20304 * 23 14 13 25 25 C 1.53000 * 109.47208 * 241.21247 * 23 14 13 26 26 C 1.38849 * 120.40083 * 180.24959 * 3 2 1 27 27 C 1.50694 * 120.88539 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.47420 * 59.99540 * 1 2 3 29 29 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46830 * 299.99470 * 1 2 3 31 31 H 1.08000 * 119.49416 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.65450 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99867 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47258 * 300.00280 * 11 10 8 35 35 H 1.09000 * 109.47143 * 60.00362 * 11 10 8 36 36 H 1.09004 * 109.47271 * 300.00002 * 12 11 10 37 37 H 1.09000 * 109.46752 * 60.00243 * 12 11 10 38 38 H 1.08996 * 109.47139 * 300.00452 * 13 12 11 39 39 H 1.09004 * 109.46815 * 59.99954 * 13 12 11 40 40 H 0.97001 * 119.99988 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46462 * 1.20578 * 23 14 13 42 42 H 1.09006 * 109.46738 * 66.53521 * 24 23 14 43 43 H 1.09002 * 109.46932 * 186.52255 * 24 23 14 44 44 H 1.08997 * 109.47367 * 306.52955 * 24 23 14 45 45 H 1.08993 * 109.47284 * 59.01178 * 25 23 14 46 46 H 1.09003 * 109.46580 * 179.01574 * 25 23 14 47 47 H 1.09000 * 109.46842 * 299.00915 * 25 23 14 48 48 H 1.08999 * 109.47569 * 263.49965 * 27 26 3 49 49 H 1.09005 * 109.47005 * 23.50079 * 27 26 3 50 50 H 1.09000 * 109.47487 * 143.49402 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8846 3.5621 0.0061 6 6 3.1953 3.6892 0.0060 7 6 4.0199 2.5636 0.0005 8 6 5.4911 2.7104 -0.0002 9 8 6.1999 1.7286 0.1057 10 7 6.0464 3.9328 -0.1182 11 6 7.5042 4.0783 -0.1183 12 6 7.8691 5.5569 -0.2647 13 6 9.3915 5.7088 -0.2654 14 7 9.7410 7.1244 -0.4062 15 6 9.8929 7.9062 0.7078 16 1 9.5481 8.9296 0.7005 17 6 10.4903 7.3833 1.8465 18 7 11.2368 6.3026 1.7608 19 14 10.2348 8.2132 3.5004 20 1 9.0386 7.6359 4.1644 21 1 11.4296 7.9934 4.3544 22 1 10.0331 9.6704 3.2970 23 6 9.9279 7.7039 -1.7387 24 6 8.9457 8.8606 -1.9342 25 6 11.3608 8.2233 -1.8725 26 6 3.4321 1.2935 -0.0052 27 6 4.2811 0.0485 -0.0116 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2197 2.3225 0.0005 32 1 3.6366 4.6749 0.0110 33 1 5.4808 4.7163 -0.2023 34 1 7.9076 3.6951 0.8190 35 1 7.9253 3.5162 -0.9518 36 1 7.4657 5.9396 -1.2022 37 1 7.4479 6.1193 0.5686 38 1 9.7953 5.3259 0.6718 39 1 9.8123 5.1464 -1.0990 40 1 11.6545 5.9374 2.5565 41 1 9.7459 6.9408 -2.4954 42 1 9.2012 9.6731 -1.2539 43 1 9.0035 9.2164 -2.9629 44 1 7.9328 8.5164 -1.7250 45 1 12.0609 7.4027 -1.7159 46 1 11.5050 8.6387 -2.8699 47 1 11.5373 8.9987 -1.1271 48 1 4.5859 -0.1887 1.0077 49 1 3.7055 -0.7817 -0.4211 50 1 5.1659 0.2150 -0.6260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267503501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:29 Heat of formation + Delta-G solvation = -25.546414 kcal Electronic energy + Delta-G solvation = -28769.022197 eV Core-core repulsion = 24797.293782 eV Total energy + Delta-G solvation = -3971.728415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27569 -39.55941 -38.18136 -36.79241 -35.25013 -33.81514 -32.58949 -31.90933 -30.70334 -28.82172 -28.06917 -27.88223 -26.19072 -25.47930 -24.15076 -23.09478 -22.35017 -20.97268 -20.51050 -19.50943 -18.45613 -17.71472 -16.65364 -16.55437 -16.37882 -16.27238 -15.57588 -15.39401 -14.97215 -14.54770 -14.31744 -14.23550 -13.77855 -13.66328 -13.30276 -13.20871 -12.95387 -12.89265 -12.77947 -12.46967 -12.45443 -12.07783 -11.88088 -11.70208 -11.46851 -11.42631 -11.29610 -10.94958 -10.77012 -10.62260 -10.41955 -10.26302 -10.15286 -9.91360 -9.75678 -9.58774 -9.54518 -9.42985 -8.88041 -8.79811 -8.47181 -6.52965 -5.75362 -3.35872 0.34468 0.90648 2.64432 2.75586 3.26460 3.36431 3.44598 3.44662 3.55860 4.01553 4.17441 4.44263 4.46895 4.48574 4.65360 4.68154 4.88307 4.92931 5.05976 5.23372 5.31885 5.37804 5.49045 5.65104 5.66739 5.77288 5.91516 5.95329 5.95888 6.03032 6.17468 6.25072 6.33259 6.40232 6.42341 6.44691 6.68268 6.73198 6.73951 6.76176 6.80465 6.81994 7.12706 7.21389 7.35099 7.50439 7.55204 7.71383 7.86458 8.19951 8.56290 9.22671 9.84739 10.43500 11.24024 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.002274 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.679511 B =12311.046074 C =12640.945165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.064 3.936 4 C 0.038 3.962 5 N -0.457 5.457 6 C 0.102 3.898 7 C -0.151 4.151 8 C 0.558 3.442 9 O -0.528 6.528 10 N -0.716 5.716 11 C 0.121 3.879 12 C -0.146 4.146 13 C 0.150 3.850 14 N -0.579 5.579 15 C -0.251 4.251 16 H 0.060 0.940 17 C 0.011 3.989 18 N -0.888 5.888 19 Si 0.894 3.106 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.162 3.838 24 C -0.152 4.152 25 C -0.147 4.147 26 C -0.012 4.012 27 C -0.113 4.113 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.024 0.976 40 H 0.254 0.746 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.028 0.972 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 -9.796 -5.692 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.058 4.058 7 C -0.156 4.156 8 C 0.343 3.657 9 O -0.406 6.406 10 N -0.367 5.367 11 C -0.002 4.002 12 C -0.187 4.187 13 C 0.023 3.977 14 N -0.299 5.299 15 C -0.381 4.381 16 H 0.078 0.922 17 C -0.189 4.189 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.055 3.945 24 C -0.211 4.211 25 C -0.206 4.206 26 C -0.021 4.021 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.472 -10.035 -5.494 22.584 hybrid contribution -0.289 0.303 0.961 1.048 sum -19.760 -9.732 -4.533 22.489 Atomic orbital electron populations 1.23151 0.77930 1.04529 1.01594 1.86102 1.21547 1.25515 1.88617 1.19768 0.92342 0.86057 1.00154 1.23067 1.00690 0.87097 1.01038 1.67535 1.11903 1.25947 1.11182 1.22891 0.88710 0.98235 0.95926 1.20821 0.95114 0.93741 1.05962 1.17917 0.86519 0.83848 0.77393 1.90749 1.63043 1.37390 1.49422 1.46120 1.09320 1.07879 1.73394 1.21545 0.77415 0.98945 1.02277 1.22519 1.02865 0.92057 1.01262 1.20830 0.88635 0.85680 1.02581 1.43842 1.79167 1.06550 1.00364 1.18938 1.32516 0.96292 0.90318 0.92246 1.25203 0.96197 0.98162 0.99317 1.69942 1.31178 1.23894 1.28062 0.86433 0.77289 0.79367 0.84526 1.21397 1.21819 1.20386 1.20413 0.92557 0.93450 0.88058 1.22158 0.99872 1.00212 0.98872 1.22088 0.98740 1.01314 0.98484 1.19866 0.90768 0.96002 0.95502 1.20917 0.99480 0.92412 1.04111 0.92337 0.87743 0.92328 0.82140 0.81977 0.76665 0.91159 0.91699 0.93222 0.91591 0.88358 0.95766 0.93600 0.93683 0.92941 0.94653 0.93606 0.93335 0.95287 0.92556 0.90109 0.91501 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.78 9.57 -19.50 -0.19 -2.96 16 3 C 0.06 0.68 6.68 -39.13 -0.26 0.42 16 4 C 0.04 0.37 10.21 -17.31 -0.18 0.20 16 5 N -0.46 -5.23 10.34 -12.80 -0.13 -5.36 16 6 C 0.10 1.14 10.69 -17.13 -0.18 0.96 16 7 C -0.15 -1.90 5.89 -104.84 -0.62 -2.52 16 8 C 0.56 8.08 7.72 -12.33 -0.10 7.99 16 9 O -0.53 -9.09 13.51 5.31 0.07 -9.01 16 10 N -0.72 -9.70 5.51 -61.25 -0.34 -10.04 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 12 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 13 C 0.15 3.26 5.25 -4.05 -0.02 3.24 16 14 N -0.58 -13.40 2.36 -165.67 -0.39 -13.79 16 15 C -0.25 -6.43 8.26 -15.06 -0.12 -6.55 16 16 H 0.06 1.55 6.97 -52.49 -0.37 1.18 16 17 C 0.01 0.30 5.01 -17.43 -0.09 0.21 16 18 N -0.89 -24.70 11.36 55.49 0.63 -24.07 16 19 Si 0.89 21.12 29.59 -169.99 -5.03 16.08 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.16 3.27 3.36 -67.93 -0.23 3.04 16 24 C -0.15 -2.73 9.00 37.16 0.33 -2.39 16 25 C -0.15 -2.94 9.16 37.16 0.34 -2.60 16 26 C -0.01 -0.15 5.97 -103.76 -0.62 -0.77 16 27 C -0.11 -1.34 8.68 36.00 0.31 -1.03 16 28 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.16 1.06 6.30 -52.49 -0.33 0.73 16 32 H 0.16 1.45 6.46 -52.49 -0.34 1.11 16 33 H 0.40 4.41 6.57 -40.82 -0.27 4.14 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 2.47 5.46 -51.93 -0.28 2.18 16 39 H 0.02 0.51 7.93 -51.93 -0.41 0.09 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.04 0.86 7.80 -51.93 -0.41 0.45 16 42 H 0.05 1.00 7.26 -51.93 -0.38 0.62 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 50 H 0.10 1.32 5.99 -51.93 -0.31 1.01 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -30.66 401.58 -7.97 -38.63 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.04 Total: 4.00 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.61 Total: 0.47 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.23 Total: -53.26 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.11 Total: -11.98 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.66 -7.97 -38.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267503501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.084 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds