Wall clock time and date at job start Tue Mar 31 2020 19:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35924 * 116.99829 * 2 1 4 4 C 1.38847 * 120.40816 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00190 * 179.72002 * 4 3 2 6 6 C 1.31688 * 121.94199 * 0.27346 * 5 4 3 7 7 C 1.39524 * 120.68755 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.52785 * 179.97438 * 7 6 5 9 9 O 1.21559 * 119.99866 * 173.96392 * 8 7 6 10 10 N 1.34773 * 120.00223 * 353.96689 * 8 7 6 11 11 C 1.46501 * 120.00100 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47052 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47256 * 180.02562 * 12 11 10 14 14 N 1.46492 * 109.47392 * 179.97438 * 13 12 11 15 15 C 1.36940 * 119.99868 * 90.00130 * 14 13 12 16 16 H 1.08000 * 120.00548 * 218.10056 * 15 14 13 17 17 C 1.38816 * 119.99851 * 38.09991 * 15 14 13 18 18 N 1.31621 * 119.99939 * 19.10164 * 17 15 14 19 19 Si 1.86800 * 120.00238 * 199.09884 * 17 15 14 20 20 H 1.48494 * 109.47021 * 89.99753 * 19 17 15 21 21 H 1.48497 * 109.47144 * 210.00219 * 19 17 15 22 22 H 1.48505 * 109.46957 * 329.99976 * 19 17 15 23 23 C 1.46498 * 120.00739 * 270.00324 * 14 13 12 24 24 C 1.52998 * 109.47193 * 121.20304 * 23 14 13 25 25 C 1.53000 * 109.47208 * 241.21247 * 23 14 13 26 26 C 1.38849 * 120.40083 * 180.24959 * 3 2 1 27 27 C 1.50694 * 120.88539 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.47420 * 59.99540 * 1 2 3 29 29 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46830 * 299.99470 * 1 2 3 31 31 H 1.08000 * 119.49416 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.65450 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99867 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47258 * 300.00280 * 11 10 8 35 35 H 1.09000 * 109.47143 * 60.00362 * 11 10 8 36 36 H 1.09004 * 109.47271 * 300.00002 * 12 11 10 37 37 H 1.09000 * 109.46752 * 60.00243 * 12 11 10 38 38 H 1.08996 * 109.47139 * 300.00452 * 13 12 11 39 39 H 1.09004 * 109.46815 * 59.99954 * 13 12 11 40 40 H 0.97001 * 119.99988 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46462 * 1.20578 * 23 14 13 42 42 H 1.09006 * 109.46738 * 66.53521 * 24 23 14 43 43 H 1.09002 * 109.46932 * 186.52255 * 24 23 14 44 44 H 1.08997 * 109.47367 * 306.52955 * 24 23 14 45 45 H 1.08993 * 109.47284 * 59.01178 * 25 23 14 46 46 H 1.09003 * 109.46580 * 179.01574 * 25 23 14 47 47 H 1.09000 * 109.46842 * 299.00915 * 25 23 14 48 48 H 1.08999 * 109.47569 * 263.49965 * 27 26 3 49 49 H 1.09005 * 109.47005 * 23.50079 * 27 26 3 50 50 H 1.09000 * 109.47487 * 143.49402 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8846 3.5621 0.0061 6 6 3.1953 3.6892 0.0060 7 6 4.0199 2.5636 0.0005 8 6 5.4911 2.7104 -0.0002 9 8 6.1999 1.7286 0.1057 10 7 6.0464 3.9328 -0.1182 11 6 7.5042 4.0783 -0.1183 12 6 7.8691 5.5569 -0.2647 13 6 9.3915 5.7088 -0.2654 14 7 9.7410 7.1244 -0.4062 15 6 9.8929 7.9062 0.7078 16 1 9.5481 8.9296 0.7005 17 6 10.4903 7.3833 1.8465 18 7 11.2368 6.3026 1.7608 19 14 10.2348 8.2132 3.5004 20 1 9.0386 7.6359 4.1644 21 1 11.4296 7.9934 4.3544 22 1 10.0331 9.6704 3.2970 23 6 9.9279 7.7039 -1.7387 24 6 8.9457 8.8606 -1.9342 25 6 11.3608 8.2233 -1.8725 26 6 3.4321 1.2935 -0.0052 27 6 4.2811 0.0485 -0.0116 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2197 2.3225 0.0005 32 1 3.6366 4.6749 0.0110 33 1 5.4808 4.7163 -0.2023 34 1 7.9076 3.6951 0.8190 35 1 7.9253 3.5162 -0.9518 36 1 7.4657 5.9396 -1.2022 37 1 7.4479 6.1193 0.5686 38 1 9.7953 5.3259 0.6718 39 1 9.8123 5.1464 -1.0990 40 1 11.6545 5.9374 2.5565 41 1 9.7459 6.9408 -2.4954 42 1 9.2012 9.6731 -1.2539 43 1 9.0035 9.2164 -2.9629 44 1 7.9328 8.5164 -1.7250 45 1 12.0609 7.4027 -1.7159 46 1 11.5050 8.6387 -2.8699 47 1 11.5373 8.9987 -1.1271 48 1 4.5859 -0.1887 1.0077 49 1 3.7055 -0.7817 -0.4211 50 1 5.1659 0.2150 -0.6260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267503501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:28 Heat of formation + Delta-G solvation = -44.339512 kcal Electronic energy + Delta-G solvation = -28769.837127 eV Core-core repulsion = 24797.293782 eV Total energy + Delta-G solvation = -3972.543345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.12935 -40.57863 -38.97476 -38.47120 -36.54808 -34.73247 -34.28241 -33.42354 -31.81025 -30.35424 -28.92248 -28.49168 -27.72554 -27.09888 -25.41021 -24.34657 -23.33542 -22.34531 -21.69320 -21.25820 -19.35096 -18.56238 -18.12726 -17.47221 -17.37329 -17.10836 -16.93572 -16.66743 -16.52948 -15.92298 -15.68561 -15.20597 -15.13058 -14.85337 -14.51323 -14.45146 -14.12569 -13.98593 -13.87194 -13.78837 -13.28154 -13.23642 -13.14231 -13.10941 -12.82351 -12.74290 -12.68638 -12.48454 -12.37533 -12.27656 -12.10466 -11.87986 -11.68098 -11.28792 -11.26385 -11.16005 -10.70798 -10.47568 -10.45274 -10.08606 -9.54856 -8.44832 -7.72651 -5.36623 -0.53899 0.06568 1.46573 1.50052 1.56284 1.71474 1.86302 2.31111 2.55160 2.65518 3.24846 3.33265 3.39961 3.58940 3.61681 3.67416 3.97962 4.07878 4.22125 4.32183 4.37467 4.38479 4.40277 4.52452 4.56040 4.62483 4.67246 4.70125 4.77211 4.77277 4.84011 4.96132 4.99435 5.02705 5.13455 5.14887 5.18584 5.22978 5.25536 5.35009 5.44968 5.53715 5.65331 5.70938 5.78266 5.96034 6.12497 6.43992 6.57689 6.69719 7.09053 7.27493 7.98043 8.49814 9.21897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.002274 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.679511 B =12311.046074 C =12640.945165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.068 3.932 4 C 0.046 3.954 5 N -0.469 5.469 6 C 0.102 3.898 7 C -0.163 4.163 8 C 0.558 3.442 9 O -0.562 6.562 10 N -0.706 5.706 11 C 0.135 3.865 12 C -0.123 4.123 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.241 4.241 16 H 0.056 0.944 17 C -0.038 4.038 18 N -0.919 5.919 19 Si 0.946 3.054 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.270 1.270 23 C 0.152 3.848 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.033 4.033 27 C -0.105 4.105 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.195 0.805 32 H 0.182 0.818 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.714 -9.095 -6.879 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.020 3.980 4 C -0.111 4.111 5 N -0.178 5.178 6 C -0.057 4.057 7 C -0.168 4.168 8 C 0.345 3.655 9 O -0.442 6.442 10 N -0.358 5.358 11 C 0.011 3.989 12 C -0.163 4.163 13 C 0.021 3.979 14 N -0.314 5.314 15 C -0.372 4.372 16 H 0.074 0.926 17 C -0.235 4.235 18 N -0.564 5.564 19 Si 0.776 3.224 20 H -0.214 1.214 21 H -0.227 1.227 22 H -0.195 1.195 23 C 0.046 3.954 24 C -0.200 4.200 25 C -0.198 4.198 26 C -0.042 4.042 27 C -0.162 4.162 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.198 0.802 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.527 -9.302 -6.702 25.277 hybrid contribution 0.553 0.024 1.244 1.361 sum -21.974 -9.278 -5.458 24.469 Atomic orbital electron populations 1.23518 0.75521 1.06363 1.02897 1.86099 1.24007 1.24792 1.88248 1.19753 0.91736 0.87037 0.99446 1.23598 1.02183 0.86255 0.99059 1.67625 1.11771 1.26721 1.11694 1.23134 0.88733 0.98516 0.95267 1.20639 0.93680 0.94628 1.07867 1.18237 0.87429 0.83361 0.76474 1.90738 1.64039 1.38457 1.50953 1.45898 1.08330 1.08455 1.73144 1.21199 0.78914 0.97674 1.01150 1.22148 0.99660 0.92832 1.01700 1.20727 0.91200 0.85121 1.00816 1.44072 1.79537 1.06715 1.01060 1.19077 1.30815 0.96214 0.91133 0.92600 1.25783 0.96762 0.99021 1.01955 1.70083 1.32760 1.25423 1.28110 0.85589 0.76536 0.78912 0.81359 1.21448 1.22742 1.19519 1.20665 0.93192 0.94692 0.86828 1.22012 0.99037 0.98488 1.00415 1.22004 0.98193 0.99764 0.99853 1.20017 0.91962 0.95808 0.96428 1.20783 0.98962 0.93130 1.03286 0.90878 0.85856 0.91054 0.78822 0.80158 0.74998 0.93379 0.91714 0.91239 0.92765 0.91880 0.95588 0.94372 0.92175 0.94497 0.91531 0.93316 0.95753 0.91720 0.94752 0.90912 0.90258 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.13 9.57 -92.69 -0.89 -6.01 16 3 C 0.07 1.32 6.68 22.56 0.15 1.47 16 4 C 0.05 0.78 10.21 84.83 0.87 1.65 16 5 N -0.47 -9.63 10.34 -194.40 -2.01 -11.64 16 6 C 0.10 2.13 10.69 85.02 0.91 3.03 16 7 C -0.16 -4.00 5.89 -20.01 -0.12 -4.12 16 8 C 0.56 16.26 7.72 86.79 0.67 16.93 16 9 O -0.56 -19.98 13.51 -3.90 -0.05 -20.03 16 10 N -0.71 -18.76 5.51 -465.96 -2.57 -21.32 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 C -0.12 -4.26 5.65 30.59 0.17 -4.09 16 13 C 0.15 6.51 5.25 86.38 0.45 6.97 16 14 N -0.59 -27.34 2.36 -678.06 -1.60 -28.94 16 15 C -0.24 -12.44 8.26 84.03 0.69 -11.74 16 16 H 0.06 2.90 6.97 -2.91 -0.02 2.88 16 17 C -0.04 -2.07 5.01 84.86 0.43 -1.65 16 18 N -0.92 -52.78 11.36 21.65 0.25 -52.53 16 19 Si 0.95 44.09 29.59 68.60 2.03 46.12 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 C 0.15 5.89 3.36 44.99 0.15 6.04 16 24 C -0.14 -4.67 9.00 71.98 0.65 -4.02 16 25 C -0.14 -5.42 9.16 71.98 0.66 -4.76 16 26 C -0.03 -0.79 5.97 -19.30 -0.12 -0.91 16 27 C -0.11 -2.56 8.68 71.23 0.62 -1.94 16 28 H 0.07 0.27 7.67 -2.39 -0.02 0.25 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.29 7.67 -2.38 -0.02 0.27 16 31 H 0.20 1.80 6.30 -2.91 -0.02 1.78 16 32 H 0.18 2.86 6.46 -2.91 -0.02 2.84 16 33 H 0.41 8.51 6.57 -92.70 -0.61 7.90 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 3.29 5.46 -2.39 -0.01 3.28 16 39 H 0.03 1.10 7.93 -2.39 -0.02 1.08 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.06 2.15 7.80 -2.39 -0.02 2.13 16 42 H 0.04 1.32 7.26 -2.38 -0.02 1.30 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.03 1.45 7.72 -2.39 -0.02 1.44 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.08 1.64 7.44 -2.38 -0.02 1.62 16 50 H 0.08 2.24 5.99 -2.39 -0.01 2.23 16 Total: -1.00 -67.78 401.58 3.28 -64.49 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.33 Total: 21.01 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 7.79 Total: 8.86 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.93 Total: -114.44 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.94 Total: -26.04 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.78 3.28 -64.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267503501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.155 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds