Wall clock time and date at job start Tue Mar 31 2020 19:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34520 * 125.78840 * 2 1 4 4 C 1.41377 * 106.83873 * 179.73940 * 3 2 1 5 5 C 1.34515 * 106.84384 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78621 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47112 * 90.00579 * 6 5 4 8 8 O 1.21281 * 119.99672 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00175 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00043 * 359.97438 * 9 7 6 11 11 C 1.46501 * 120.00185 * 179.97438 * 9 7 6 12 12 C 1.53000 * 109.47277 * 89.99797 * 11 9 7 13 13 N 1.46894 * 109.47429 * 179.97438 * 12 11 9 14 14 C 1.46902 * 111.00407 * 294.30695 * 13 12 11 15 15 C 1.53234 * 109.34408 * 172.74550 * 14 13 12 16 16 N 1.47082 * 108.52227 * 53.82556 * 15 14 13 17 17 C 1.36939 * 120.87869 * 128.84027 * 16 15 14 18 18 H 1.08000 * 119.99963 * 206.56410 * 17 16 15 19 19 C 1.38811 * 120.00169 * 26.55991 * 17 16 15 20 20 N 1.31619 * 120.00180 * 17.02405 * 19 17 16 21 21 Si 1.86807 * 119.99896 * 197.03019 * 19 17 16 22 22 H 1.48493 * 109.47033 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46935 * 120.00016 * 21 19 17 24 24 H 1.48498 * 109.46845 * 239.99844 * 21 19 17 25 25 C 1.47078 * 118.23911 * 308.82019 * 16 15 14 26 26 C 1.46898 * 111.00408 * 170.00198 * 13 12 11 27 27 O 1.34296 * 108.41817 * 0.02562 * 5 4 3 28 28 H 1.08998 * 109.47427 * 89.99833 * 1 2 3 29 29 H 1.09005 * 109.46763 * 209.99444 * 1 2 3 30 30 H 1.08995 * 109.47274 * 329.99329 * 1 2 3 31 31 H 1.07998 * 126.57807 * 359.70799 * 3 2 1 32 32 H 1.08005 * 126.57769 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46977 * 210.00136 * 6 5 4 34 34 H 1.08993 * 109.47631 * 330.00374 * 6 5 4 35 35 H 1.09004 * 109.46663 * 90.00515 * 10 9 7 36 36 H 1.09002 * 109.47010 * 209.99518 * 10 9 7 37 37 H 1.08998 * 109.47244 * 330.00331 * 10 9 7 38 38 H 1.08998 * 109.47319 * 209.99760 * 11 9 7 39 39 H 1.08999 * 109.46958 * 330.00510 * 11 9 7 40 40 H 1.09001 * 109.47344 * 300.00471 * 12 11 9 41 41 H 1.09005 * 109.46915 * 60.00305 * 12 11 9 42 42 H 1.09007 * 109.48951 * 292.70674 * 14 13 12 43 43 H 1.08999 * 109.49460 * 52.77870 * 14 13 12 44 44 H 1.09006 * 109.62610 * 294.11747 * 15 14 13 45 45 H 1.09004 * 109.63170 * 173.53670 * 15 14 13 46 46 H 0.96992 * 120.00360 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.62389 * 291.47326 * 25 16 15 48 48 H 1.08996 * 109.78840 * 170.99226 * 25 16 15 49 49 H 1.08997 * 109.49130 * 307.21700 * 26 13 12 50 50 H 1.09000 * 109.49156 * 67.29634 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0062 5 6 3.5813 -0.7121 0.0101 6 6 4.7706 -1.6377 0.0177 7 6 5.1613 -1.9419 1.4411 8 8 4.5352 -1.4554 2.3589 9 7 6.2056 -2.7553 1.6941 10 6 6.9607 -3.3443 0.5854 11 6 6.5857 -3.0506 3.0777 12 6 5.8315 -4.2913 3.5602 13 7 6.2131 -4.5878 4.9474 14 6 7.6277 -4.9746 5.0332 15 6 8.0316 -5.0984 6.5061 16 7 7.0945 -6.0159 7.1720 17 6 7.5525 -7.0696 7.9171 18 1 6.9405 -7.9509 8.0395 19 6 8.8035 -7.0049 8.5152 20 7 9.4053 -5.8431 8.6583 21 14 9.6330 -8.5668 9.1168 22 1 8.7546 -9.7317 8.8406 23 1 10.9272 -8.7436 8.4103 24 1 9.8765 -8.4665 10.5783 25 6 5.6525 -5.7715 7.0167 26 6 5.3423 -5.6211 5.5236 27 8 2.2924 -1.0893 0.0061 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9665 2.1204 -0.0044 32 1 4.5212 1.2434 0.0074 33 1 4.5128 -2.5648 -0.4943 34 1 5.6060 -1.1602 -0.4941 35 1 7.7796 -2.6797 0.3101 36 1 7.3638 -4.3094 0.8925 37 1 6.3008 -3.4820 -0.2711 38 1 7.6587 -3.2353 3.1283 39 1 6.3327 -2.2019 3.7131 40 1 4.7584 -4.1068 3.5096 41 1 6.0845 -5.1402 2.9248 42 1 7.7737 -5.9326 4.5341 43 1 8.2423 -4.2151 4.5500 44 1 7.9854 -4.1188 6.9820 45 1 9.0444 -5.4952 6.5760 46 1 10.2793 -5.7979 9.0765 47 1 5.3777 -4.8566 7.5417 48 1 5.0898 -6.6110 7.4249 49 1 4.2996 -5.3304 5.3962 50 1 5.5202 -6.5701 5.0178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267606154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:53 Heat of formation + Delta-G solvation = 19.630591 kcal Electronic energy + Delta-G solvation = -28909.026403 eV Core-core repulsion = 24939.257009 eV Total energy + Delta-G solvation = -3969.769393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.77723 -40.03534 -38.11467 -35.91136 -34.36007 -33.38345 -33.25935 -31.61364 -30.47914 -29.90921 -29.00747 -26.96916 -26.11231 -24.94881 -23.32464 -22.52632 -21.99937 -21.50182 -20.41615 -19.33201 -19.07226 -17.48039 -16.99543 -16.80721 -16.20825 -16.09578 -15.70415 -14.99199 -14.60678 -14.50150 -14.37848 -13.91716 -13.66985 -13.59631 -13.44148 -13.39933 -13.31484 -13.19300 -12.99114 -12.95369 -12.80410 -12.69643 -12.37932 -12.22487 -11.93073 -11.74084 -11.39914 -11.06156 -10.93823 -10.73858 -10.39658 -10.27981 -10.08222 -10.02510 -9.96626 -9.73211 -9.59798 -8.84013 -8.49212 -8.45790 -7.79645 -6.64445 -5.76443 -3.17279 1.47602 2.37752 2.43088 2.61395 2.93532 3.37421 3.45242 3.47596 4.22660 4.33515 4.47353 4.53294 4.59233 4.75735 4.82771 4.85130 4.96857 5.03273 5.13476 5.14403 5.15355 5.33957 5.37288 5.40747 5.41339 5.46145 5.60975 5.62874 5.77217 5.82908 5.92270 5.95413 6.01102 6.10504 6.16757 6.23305 6.32369 6.35789 6.40674 6.55717 6.72018 6.97585 6.98565 7.15933 7.27388 7.62429 7.66428 7.72721 7.84034 8.00006 8.45195 9.23140 9.86586 10.45511 11.32458 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.002002 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.124612 B =13980.507826 C =14510.637861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.012 4.012 3 C -0.212 4.212 4 C -0.192 4.192 5 C 0.002 3.998 6 C -0.058 4.058 7 C 0.511 3.489 8 O -0.520 6.520 9 N -0.616 5.616 10 C 0.074 3.926 11 C 0.118 3.882 12 C 0.045 3.955 13 N -0.530 5.530 14 C 0.033 3.967 15 C 0.178 3.822 16 N -0.596 5.596 17 C -0.250 4.250 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.149 3.851 26 C 0.047 3.953 27 O -0.171 6.171 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.088 0.912 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 10.577 -23.857 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.231 4.231 4 C -0.211 4.211 5 C -0.048 4.048 6 C -0.098 4.098 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.350 5.350 10 C -0.069 4.069 11 C -0.004 4.004 12 C -0.085 4.085 13 N -0.255 5.255 14 C -0.096 4.096 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.022 3.978 26 C -0.082 4.082 27 O -0.067 6.067 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.700 10.974 -22.977 27.620 hybrid contribution 0.828 -1.371 -0.217 1.616 sum -9.872 9.603 -23.194 26.975 Atomic orbital electron populations 1.20300 0.85153 1.04197 1.03315 1.22412 0.93956 0.84114 1.05729 1.21522 0.92639 0.99335 1.09570 1.21483 0.98281 0.93623 1.07699 1.21410 0.82645 0.93839 1.06900 1.20131 0.93646 0.99949 0.96075 1.20394 0.80134 0.78846 0.90884 1.90781 1.51532 1.50744 1.46368 1.47852 1.31593 1.47843 1.07728 1.21880 0.96449 0.99282 0.89337 1.21538 0.99116 0.99135 0.80596 1.22355 1.00150 0.95962 0.90024 1.61863 1.04268 1.43674 1.15736 1.22973 0.87505 0.97212 1.01953 1.20866 0.95110 0.93305 0.85551 1.44134 0.99250 1.31629 1.56904 1.19241 1.01142 0.93159 1.24374 0.91618 1.25029 0.99813 0.96471 0.98568 1.70040 1.16037 1.22170 1.46568 0.86226 0.79399 0.83085 0.78101 1.20344 1.21618 1.21725 1.20976 0.87057 0.98390 0.91391 1.22594 0.95306 0.91865 0.98436 1.83916 1.16174 1.35171 1.71485 0.90207 0.90500 0.89331 0.83542 0.83616 0.87177 0.85970 0.92133 0.90577 0.91039 0.90125 0.88805 0.91222 0.95704 0.95764 0.92095 0.95510 0.89354 0.93694 0.95575 0.92608 0.92067 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.00 0.38 -0.11 16 2 C -0.01 -0.13 7.32 -35.62 -0.26 -0.39 16 3 C -0.21 -2.20 10.81 -39.70 -0.43 -2.63 16 4 C -0.19 -2.10 10.81 -39.70 -0.43 -2.53 16 5 C 0.00 0.03 5.81 -35.62 -0.21 -0.18 16 6 C -0.06 -0.50 4.79 -29.04 -0.14 -0.64 16 7 C 0.51 6.31 7.67 -10.99 -0.08 6.23 16 8 O -0.52 -8.97 15.61 5.56 0.09 -8.89 16 9 N -0.62 -6.68 2.87 -181.57 -0.52 -7.20 16 10 C 0.07 0.48 10.24 59.85 0.61 1.09 16 11 C 0.12 1.60 5.34 -4.04 -0.02 1.58 16 12 C 0.04 0.68 5.29 -3.83 -0.02 0.66 16 13 N -0.53 -9.86 4.63 -234.33 -1.08 -10.94 16 14 C 0.03 0.64 5.46 -3.70 -0.02 0.62 16 15 C 0.18 4.35 5.42 -3.60 -0.02 4.33 16 16 N -0.60 -15.44 3.04 -172.01 -0.52 -15.96 16 17 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 -0.02 4.94 -17.43 -0.09 -0.10 16 20 N -0.90 -26.48 11.15 55.49 0.62 -25.86 16 21 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.30 6.69 -3.60 -0.02 3.27 16 26 C 0.05 0.90 5.62 -3.70 -0.02 0.88 16 27 O -0.17 -2.15 10.65 5.73 0.06 -2.09 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.11 0.70 7.40 -51.93 -0.38 0.32 16 34 H 0.12 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.07 0.30 6.44 -51.93 -0.33 -0.03 16 38 H 0.08 1.01 6.33 -51.93 -0.33 0.68 16 39 H 0.09 1.50 7.42 -51.93 -0.39 1.11 16 40 H 0.07 1.14 7.97 -51.93 -0.41 0.72 16 41 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 49 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -35.36 400.64 -9.62 -44.98 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.35 Total: -1.85 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.92 Total: 4.98 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -1.51 Total: -59.96 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.15 Total: -10.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.36 -9.62 -44.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267606154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.613 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds