Wall clock time and date at job start Tue Mar 31 2020 19:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34520 * 125.78840 * 2 1 4 4 C 1.41377 * 106.83873 * 179.73940 * 3 2 1 5 5 C 1.34515 * 106.84384 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78621 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47112 * 90.00579 * 6 5 4 8 8 O 1.21281 * 119.99672 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00175 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00043 * 359.97438 * 9 7 6 11 11 C 1.46501 * 120.00185 * 179.97438 * 9 7 6 12 12 C 1.53000 * 109.47277 * 89.99797 * 11 9 7 13 13 N 1.46894 * 109.47429 * 179.97438 * 12 11 9 14 14 C 1.46902 * 111.00407 * 294.30695 * 13 12 11 15 15 C 1.53234 * 109.34408 * 172.74550 * 14 13 12 16 16 N 1.47082 * 108.52227 * 53.82556 * 15 14 13 17 17 C 1.36939 * 120.87869 * 128.84027 * 16 15 14 18 18 H 1.08000 * 119.99963 * 206.56410 * 17 16 15 19 19 C 1.38811 * 120.00169 * 26.55991 * 17 16 15 20 20 N 1.31619 * 120.00180 * 17.02405 * 19 17 16 21 21 Si 1.86807 * 119.99896 * 197.03019 * 19 17 16 22 22 H 1.48493 * 109.47033 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46935 * 120.00016 * 21 19 17 24 24 H 1.48498 * 109.46845 * 239.99844 * 21 19 17 25 25 C 1.47078 * 118.23911 * 308.82019 * 16 15 14 26 26 C 1.46898 * 111.00408 * 170.00198 * 13 12 11 27 27 O 1.34296 * 108.41817 * 0.02562 * 5 4 3 28 28 H 1.08998 * 109.47427 * 89.99833 * 1 2 3 29 29 H 1.09005 * 109.46763 * 209.99444 * 1 2 3 30 30 H 1.08995 * 109.47274 * 329.99329 * 1 2 3 31 31 H 1.07998 * 126.57807 * 359.70799 * 3 2 1 32 32 H 1.08005 * 126.57769 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46977 * 210.00136 * 6 5 4 34 34 H 1.08993 * 109.47631 * 330.00374 * 6 5 4 35 35 H 1.09004 * 109.46663 * 90.00515 * 10 9 7 36 36 H 1.09002 * 109.47010 * 209.99518 * 10 9 7 37 37 H 1.08998 * 109.47244 * 330.00331 * 10 9 7 38 38 H 1.08998 * 109.47319 * 209.99760 * 11 9 7 39 39 H 1.08999 * 109.46958 * 330.00510 * 11 9 7 40 40 H 1.09001 * 109.47344 * 300.00471 * 12 11 9 41 41 H 1.09005 * 109.46915 * 60.00305 * 12 11 9 42 42 H 1.09007 * 109.48951 * 292.70674 * 14 13 12 43 43 H 1.08999 * 109.49460 * 52.77870 * 14 13 12 44 44 H 1.09006 * 109.62610 * 294.11747 * 15 14 13 45 45 H 1.09004 * 109.63170 * 173.53670 * 15 14 13 46 46 H 0.96992 * 120.00360 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.62389 * 291.47326 * 25 16 15 48 48 H 1.08996 * 109.78840 * 170.99226 * 25 16 15 49 49 H 1.08997 * 109.49130 * 307.21700 * 26 13 12 50 50 H 1.09000 * 109.49156 * 67.29634 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0062 5 6 3.5813 -0.7121 0.0101 6 6 4.7706 -1.6377 0.0177 7 6 5.1613 -1.9419 1.4411 8 8 4.5352 -1.4554 2.3589 9 7 6.2056 -2.7553 1.6941 10 6 6.9607 -3.3443 0.5854 11 6 6.5857 -3.0506 3.0777 12 6 5.8315 -4.2913 3.5602 13 7 6.2131 -4.5878 4.9474 14 6 7.6277 -4.9746 5.0332 15 6 8.0316 -5.0984 6.5061 16 7 7.0945 -6.0159 7.1720 17 6 7.5525 -7.0696 7.9171 18 1 6.9405 -7.9509 8.0395 19 6 8.8035 -7.0049 8.5152 20 7 9.4053 -5.8431 8.6583 21 14 9.6330 -8.5668 9.1168 22 1 8.7546 -9.7317 8.8406 23 1 10.9272 -8.7436 8.4103 24 1 9.8765 -8.4665 10.5783 25 6 5.6525 -5.7715 7.0167 26 6 5.3423 -5.6211 5.5236 27 8 2.2924 -1.0893 0.0061 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9665 2.1204 -0.0044 32 1 4.5212 1.2434 0.0074 33 1 4.5128 -2.5648 -0.4943 34 1 5.6060 -1.1602 -0.4941 35 1 7.7796 -2.6797 0.3101 36 1 7.3638 -4.3094 0.8925 37 1 6.3008 -3.4820 -0.2711 38 1 7.6587 -3.2353 3.1283 39 1 6.3327 -2.2019 3.7131 40 1 4.7584 -4.1068 3.5096 41 1 6.0845 -5.1402 2.9248 42 1 7.7737 -5.9326 4.5341 43 1 8.2423 -4.2151 4.5500 44 1 7.9854 -4.1188 6.9820 45 1 9.0444 -5.4952 6.5760 46 1 10.2793 -5.7979 9.0765 47 1 5.3777 -4.8566 7.5417 48 1 5.0898 -6.6110 7.4249 49 1 4.2996 -5.3304 5.3962 50 1 5.5202 -6.5701 5.0178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267606154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:52 Heat of formation + Delta-G solvation = -3.679863 kcal Electronic energy + Delta-G solvation = -28910.037220 eV Core-core repulsion = 24939.257009 eV Total energy + Delta-G solvation = -3970.780210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.54903 -40.99747 -39.69628 -37.08915 -35.95876 -34.20421 -34.01456 -33.37628 -31.68046 -31.43329 -30.13521 -28.08043 -27.27823 -25.96241 -24.91838 -24.27104 -22.97488 -22.68535 -21.22784 -20.86584 -20.20226 -18.77990 -18.28474 -17.82032 -17.31974 -16.96863 -16.76890 -16.54806 -16.09193 -15.90061 -15.40243 -15.31540 -15.14847 -15.05473 -14.79442 -14.42904 -14.33493 -13.96764 -13.87471 -13.75258 -13.71812 -13.55795 -13.30672 -13.14939 -13.10634 -13.00571 -12.85842 -12.65843 -12.49197 -12.42616 -12.12611 -12.04096 -11.85600 -11.58755 -11.40001 -11.02992 -10.78990 -10.61224 -9.77041 -9.28586 -9.20858 -8.70532 -7.88733 -5.33860 0.69492 1.45854 1.47037 1.54172 1.58330 1.60407 1.88682 2.13161 2.49974 3.03733 3.26627 3.50349 3.64266 3.67731 3.93025 3.98883 4.07908 4.12418 4.20583 4.24020 4.30857 4.34493 4.42190 4.43306 4.52179 4.58002 4.58834 4.66195 4.70498 4.71960 4.78902 4.85593 4.86308 4.91517 4.95818 4.98697 5.02603 5.06648 5.16226 5.29053 5.33925 5.45058 5.60124 5.64539 5.66915 6.13462 6.20468 6.21596 6.34539 6.36360 7.11335 7.11822 7.81481 8.36693 9.18502 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.002002 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.124612 B =13980.507826 C =14510.637861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.028 4.028 3 C -0.228 4.228 4 C -0.207 4.207 5 C -0.019 4.019 6 C -0.049 4.049 7 C 0.506 3.494 8 O -0.580 6.580 9 N -0.611 5.611 10 C 0.065 3.935 11 C 0.125 3.875 12 C 0.056 3.944 13 N -0.545 5.545 14 C 0.052 3.948 15 C 0.184 3.816 16 N -0.614 5.614 17 C -0.264 4.264 18 H 0.068 0.932 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.293 1.293 25 C 0.144 3.856 26 C 0.059 3.941 27 O -0.194 6.194 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.087 0.913 44 H -0.004 1.004 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.011 0.989 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 9.881 -26.570 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.246 4.246 4 C -0.226 4.226 5 C -0.069 4.069 6 C -0.088 4.088 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.344 5.344 10 C -0.077 4.077 11 C 0.002 3.998 12 C -0.073 4.073 13 N -0.271 5.271 14 C -0.077 4.077 15 C 0.058 3.942 16 N -0.338 5.338 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.248 4.248 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.220 1.220 25 C 0.019 3.981 26 C -0.071 4.071 27 O -0.091 6.091 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.183 0.817 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.105 0.895 44 H 0.014 0.986 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.779 10.262 -25.747 29.739 hybrid contribution 0.797 -1.092 0.645 1.498 sum -9.981 9.170 -25.102 28.527 Atomic orbital electron populations 1.20470 0.82782 1.04862 1.04771 1.23179 0.95550 0.83858 1.05174 1.21888 0.92681 1.00374 1.09694 1.21844 0.99138 0.94033 1.07564 1.21985 0.83016 0.94738 1.07152 1.20274 0.93735 1.01115 0.93655 1.21099 0.79518 0.78002 0.91918 1.90755 1.53624 1.53156 1.48416 1.47926 1.31458 1.47356 1.07632 1.22230 0.97285 0.99574 0.88563 1.21287 0.99458 0.97036 0.82051 1.22279 0.99686 0.97209 0.88137 1.61781 1.03583 1.43465 1.18263 1.22648 0.88630 0.98199 0.98265 1.20656 0.93903 0.91147 0.88495 1.44427 1.00857 1.31460 1.57090 1.19567 1.01536 0.93849 1.24423 0.91476 1.25833 1.00410 0.99417 0.99138 1.70201 1.16183 1.24212 1.47606 0.85154 0.78256 0.79628 0.77062 1.19157 1.21324 1.21989 1.21097 0.85309 0.97881 0.93851 1.22409 0.96500 0.92267 0.95882 1.83904 1.16993 1.36278 1.71974 0.88270 0.90675 0.87768 0.81686 0.82267 0.84544 0.82288 0.90097 0.90297 0.88173 0.88777 0.91866 0.92278 0.94024 0.95691 0.89461 0.98637 0.92069 0.93988 0.97074 0.91972 0.89946 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.42 71.24 0.74 -0.14 16 2 C -0.03 -0.58 7.32 24.83 0.18 -0.40 16 3 C -0.23 -4.59 10.81 22.19 0.24 -4.35 16 4 C -0.21 -4.38 10.81 22.19 0.24 -4.14 16 5 C -0.02 -0.42 5.81 24.83 0.14 -0.27 16 6 C -0.05 -0.71 4.79 29.10 0.14 -0.57 16 7 C 0.51 11.81 7.67 87.66 0.67 12.49 16 8 O -0.58 -20.34 15.61 -3.03 -0.05 -20.38 16 9 N -0.61 -11.87 2.87 -846.75 -2.43 -14.31 16 10 C 0.06 0.58 10.24 127.77 1.31 1.89 16 11 C 0.13 3.22 5.34 86.38 0.46 3.68 16 12 C 0.06 1.62 5.29 86.30 0.46 2.08 16 13 N -0.55 -19.84 4.63 -895.27 -4.14 -23.98 16 14 C 0.05 1.98 5.46 86.38 0.47 2.45 16 15 C 0.18 9.22 5.42 86.35 0.47 9.69 16 16 N -0.61 -32.38 3.04 -698.13 -2.12 -34.50 16 17 C -0.26 -14.89 9.63 84.03 0.81 -14.08 16 18 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 19 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 20 N -0.94 -56.23 11.15 21.65 0.24 -55.99 16 21 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.14 6.46 6.69 86.35 0.58 7.04 16 26 C 0.06 2.18 5.62 86.38 0.49 2.66 16 27 O -0.19 -4.82 10.65 -2.40 -0.03 -4.85 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.14 1.24 7.40 -2.39 -0.02 1.22 16 34 H 0.16 1.06 8.11 -2.39 -0.02 1.04 16 35 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.08 0.72 8.07 -2.39 -0.02 0.71 16 37 H 0.10 0.36 6.44 -2.39 -0.02 0.35 16 38 H 0.09 2.14 6.33 -2.39 -0.02 2.13 16 39 H 0.06 2.04 7.42 -2.39 -0.02 2.02 16 40 H 0.06 1.87 7.97 -2.39 -0.02 1.85 16 41 H 0.04 1.09 8.12 -2.38 -0.02 1.07 16 42 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.09 2.86 6.16 -2.39 -0.01 2.85 16 44 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 45 H 0.06 3.38 6.12 -2.39 -0.01 3.36 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 2.64 7.96 -2.39 -0.02 2.62 16 49 H 0.08 2.70 7.99 -2.39 -0.02 2.69 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.42 400.64 2.23 -78.19 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.91 Total: 13.11 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 7.82 Total: 15.44 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -8.46 Total: -128.78 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -80.42 2.23 -78.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267606154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.511 kcal (2) G-P(sol) polarization free energy of solvation -80.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds