Wall clock time and date at job start Tue Mar 31 2020 19:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35648 * 116.99728 * 2 1 4 4 C 1.39340 * 120.54020 * 0.28030 * 3 2 1 5 5 C 1.38306 * 118.43708 * 180.24084 * 4 3 2 6 6 C 1.50706 * 120.27732 * 179.78446 * 5 4 3 7 7 C 1.38770 * 119.44606 * 359.50181 * 5 4 3 8 8 N 1.31376 * 121.06221 * 0.23478 * 7 5 4 9 9 C 1.32855 * 121.70174 * 0.02562 * 8 7 5 10 10 C 1.47822 * 119.78418 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00050 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00027 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.46937 * 325.00119 * 13 12 10 15 15 C 1.52996 * 109.46814 * 204.99541 * 13 12 10 16 16 N 1.46500 * 109.47447 * 55.00443 * 15 13 12 17 17 C 1.36929 * 120.00411 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00100 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99960 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48512 * 109.47079 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47294 * 119.99598 * 21 19 17 24 24 H 1.48495 * 109.47399 * 240.00404 * 21 19 17 25 25 C 1.53006 * 109.47011 * 84.99744 * 13 12 10 26 26 C 1.52998 * 109.46980 * 294.99829 * 25 13 12 27 27 C 1.53001 * 109.46915 * 175.00045 * 26 25 13 28 28 C 1.52999 * 109.47346 * 294.99992 * 26 25 13 29 29 H 1.09004 * 109.46588 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46708 * 299.99544 * 1 2 3 31 31 H 1.09002 * 109.47222 * 59.99722 * 1 2 3 32 32 H 1.08001 * 120.78699 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46953 * 269.71587 * 6 5 4 34 34 H 1.09000 * 109.47318 * 29.71184 * 6 5 4 35 35 H 1.09000 * 109.47161 * 149.71815 * 6 5 4 36 36 H 1.08003 * 119.46296 * 180.25566 * 7 5 4 37 37 H 0.97006 * 119.99627 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46824 * 175.00144 * 15 13 12 39 39 H 1.08999 * 109.47270 * 294.99744 * 15 13 12 40 40 H 0.97001 * 119.99561 * 359.97438 * 16 15 13 41 41 H 0.96997 * 120.00021 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.46808 * 54.99947 * 25 13 12 43 43 H 1.08997 * 109.46751 * 174.99877 * 25 13 12 44 44 H 1.09002 * 109.47394 * 55.00394 * 26 25 13 45 45 H 1.09003 * 109.47326 * 59.99937 * 27 26 25 46 46 H 1.08998 * 109.47455 * 180.02562 * 27 26 25 47 47 H 1.08999 * 109.47346 * 300.00137 * 27 26 25 48 48 H 1.09004 * 109.46740 * 60.00230 * 28 26 25 49 49 H 1.08994 * 109.47281 * 180.02562 * 28 26 25 50 50 H 1.09003 * 109.46900 * 300.00066 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3843 0.0059 5 6 1.9696 3.5928 0.0005 6 6 1.2019 4.8897 0.0016 7 6 3.3572 3.6012 0.0000 8 7 4.0419 2.4800 0.0000 9 6 3.4410 1.2950 -0.0001 10 6 4.2532 0.0599 -0.0007 11 8 3.7076 -1.0263 -0.0003 12 7 5.5987 0.1381 -0.0006 13 6 6.4036 -1.0860 -0.0007 14 1 5.8998 -1.8521 0.5886 15 6 7.7761 -0.7939 0.6089 16 7 7.6043 -0.2079 1.9406 17 6 8.7015 0.1380 2.6832 18 1 9.6937 -0.0216 2.2874 19 6 8.5387 0.6938 3.9448 20 7 7.3297 0.8887 4.4269 21 14 10.0355 1.1649 4.9581 22 1 11.2696 0.8470 4.1956 23 1 9.9967 2.6201 5.2514 24 1 10.0305 0.4028 6.2325 25 6 6.5787 -1.5812 -1.4378 26 6 5.2183 -1.9912 -2.0053 27 6 5.3735 -2.3680 -3.4800 28 6 4.6818 -3.1933 -1.2255 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 0.2174 2.3527 0.0101 33 1 1.0165 5.2030 -1.0258 34 1 0.2511 4.7487 0.5156 35 1 1.7829 5.6554 0.5157 36 1 3.8828 4.5448 0.0001 37 1 6.0341 1.0049 -0.0006 38 1 8.3423 -1.7217 0.6906 39 1 8.3156 -0.0941 -0.0292 40 1 6.7133 -0.0648 2.2962 41 1 7.2159 1.2774 5.3083 42 1 7.0014 -0.7830 -2.0480 43 1 7.2500 -2.4399 -1.4469 44 1 4.5208 -1.1585 -1.9145 45 1 6.0711 -3.2006 -3.5709 46 1 4.4043 -2.6597 -3.8845 47 1 5.7558 -1.5116 -4.0355 48 1 4.5712 -2.9248 -0.1749 49 1 3.7128 -3.4857 -1.6301 50 1 5.3793 -4.0260 -1.3164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268106400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:09 Heat of formation + Delta-G solvation = -57.926504 kcal Electronic energy + Delta-G solvation = -30295.055706 eV Core-core repulsion = 26321.923185 eV Total energy + Delta-G solvation = -3973.132521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.01463 -40.61368 -39.24653 -37.88114 -36.43823 -35.08540 -34.58603 -32.89948 -31.98334 -30.68113 -28.95459 -28.04186 -27.90433 -27.17918 -24.88614 -24.47290 -23.62070 -22.40026 -21.42436 -20.78218 -19.45324 -18.91534 -18.50450 -18.13848 -17.14566 -16.96338 -16.75854 -16.50292 -16.05829 -15.46638 -15.25436 -15.24009 -14.96409 -14.75221 -14.66507 -14.53546 -14.49677 -14.24003 -13.71353 -13.57674 -13.40383 -13.22756 -13.01015 -12.99006 -12.94407 -12.81735 -12.53472 -12.38365 -12.35064 -12.31731 -12.04200 -11.88102 -11.60678 -11.38218 -11.23920 -11.05134 -10.96007 -10.50222 -10.49381 -9.83577 -9.40259 -8.99991 -7.92647 -5.22655 -0.33962 0.23288 1.47425 1.48740 1.58930 1.84685 2.17224 2.29416 2.56889 2.85789 3.28049 3.41439 3.56950 3.66449 3.75276 3.92227 4.00647 4.07045 4.10561 4.24465 4.26092 4.33582 4.34666 4.40150 4.44595 4.61401 4.68675 4.72330 4.80752 4.83614 4.86327 4.90245 4.90345 4.94445 5.00305 5.10337 5.14369 5.17617 5.18529 5.25628 5.40243 5.47889 5.51166 5.59167 5.67109 5.73664 6.22849 6.27303 6.59532 6.88054 7.34075 7.38540 8.08299 8.32579 9.30959 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008279 B = 0.004255 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.118006 B = 6579.594407 C = 8889.321386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.302 6.302 3 C 0.131 3.869 4 C -0.178 4.178 5 C -0.062 4.062 6 C -0.111 4.111 7 C 0.045 3.955 8 N -0.438 5.438 9 C -0.002 4.002 10 C 0.563 3.437 11 O -0.535 6.535 12 N -0.694 5.694 13 C 0.146 3.854 14 H 0.067 0.933 15 C 0.145 3.855 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.975 3.025 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.296 1.296 25 C -0.112 4.112 26 C -0.089 4.089 27 C -0.139 4.139 28 C -0.129 4.129 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.407 0.593 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.042 0.958 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 4.419 -16.081 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.080 3.920 4 C -0.204 4.204 5 C -0.064 4.064 6 C -0.168 4.168 7 C -0.118 4.118 8 N -0.149 5.149 9 C -0.139 4.139 10 C 0.349 3.651 11 O -0.412 6.412 12 N -0.345 5.345 13 C 0.041 3.959 14 H 0.085 0.915 15 C 0.019 3.981 16 N -0.385 5.385 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.804 3.196 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.223 1.223 25 C -0.151 4.151 26 C -0.108 4.108 27 C -0.196 4.196 28 C -0.186 4.186 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.196 0.804 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.202 0.798 37 H 0.242 0.758 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.406 3.358 -16.072 22.515 hybrid contribution -0.398 0.717 1.224 1.473 sum -15.804 4.074 -14.848 22.064 Atomic orbital electron populations 1.23503 0.76387 1.05795 1.02755 1.86385 1.23348 1.25086 1.86446 1.20184 0.91906 0.86770 0.93170 1.21970 1.02255 0.90194 1.05996 1.21437 0.94665 0.97327 0.93018 1.20927 1.00085 0.91282 1.04466 1.23180 0.91966 0.96373 1.00233 1.67555 1.40974 0.98000 1.08362 1.20635 0.89620 0.92766 1.10895 1.17904 0.82587 0.87841 0.76720 1.90763 1.72141 1.27754 1.50565 1.45768 1.05326 1.10249 1.73124 1.21235 0.90751 0.86577 0.97345 0.91507 1.21113 0.94267 0.96760 0.86002 1.42538 1.05694 1.74887 1.15415 1.19704 0.88223 1.32305 0.97188 0.90215 1.25590 0.99152 1.02880 0.99152 1.69872 1.22021 1.51789 1.18457 0.85043 0.79261 0.76935 0.78317 1.18745 1.22050 1.22313 1.21954 0.97945 1.01548 0.93629 1.21054 0.96007 0.98301 0.95416 1.21791 1.01624 1.01511 0.94653 1.21718 0.99524 0.96850 1.00552 0.86888 0.91170 0.90472 0.80388 0.88407 0.89443 0.89489 0.79802 0.75752 0.94219 0.94749 0.79580 0.94233 0.91055 0.89640 0.93021 0.91794 0.92894 0.92698 0.93403 0.93928 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.83 113.37 1.11 1.28 16 2 O -0.30 -8.99 8.56 -68.64 -0.59 -9.57 16 3 C 0.13 3.89 6.71 22.93 0.15 4.05 16 4 C -0.18 -3.67 8.80 22.55 0.20 -3.47 16 5 C -0.06 -1.17 5.90 -19.72 -0.12 -1.29 16 6 C -0.11 -1.04 10.03 71.24 0.71 -0.32 16 7 C 0.04 1.11 10.85 84.89 0.92 2.03 16 8 N -0.44 -14.60 9.54 -184.63 -1.76 -16.36 16 9 C 0.00 -0.08 6.76 41.93 0.28 0.20 16 10 C 0.56 22.33 6.35 86.78 0.55 22.88 16 11 O -0.53 -22.34 10.09 17.10 0.17 -22.16 16 12 N -0.69 -26.83 4.46 -445.43 -1.99 -28.81 16 13 C 0.15 5.42 2.33 44.99 0.10 5.52 16 14 H 0.07 2.82 5.92 -2.39 -0.01 2.80 16 15 C 0.15 6.05 5.82 86.38 0.50 6.55 16 16 N -0.74 -39.52 5.43 -343.45 -1.87 -41.39 16 17 C -0.24 -13.91 9.99 84.04 0.84 -13.07 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -61.91 13.06 21.65 0.28 -61.62 16 21 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 C -0.11 -3.32 4.36 30.60 0.13 -3.18 16 26 C -0.09 -2.64 2.38 -10.79 -0.03 -2.67 16 27 C -0.14 -3.24 9.19 71.98 0.66 -2.57 16 28 C -0.13 -4.01 8.03 71.98 0.58 -3.43 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 0.95 7.69 -2.39 -0.02 0.93 16 31 H 0.08 0.91 7.71 -2.39 -0.02 0.89 16 32 H 0.18 2.22 6.46 -2.91 -0.02 2.20 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.59 8.09 -2.39 -0.02 0.57 16 35 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.41 16.21 7.93 -92.70 -0.73 15.47 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.37 21.78 7.33 -92.71 -0.68 21.10 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.80 5.19 -2.39 -0.01 1.79 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.78 4.75 -2.38 -0.01 1.77 16 49 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -77.13 397.78 2.91 -74.22 By element: Atomic # 1 Polarization: 48.33 SS G_CDS: -0.46 Total: 47.87 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.08 Total: 8.49 kcal Atomic # 7 Polarization: -142.86 SS G_CDS: -5.33 Total: -148.19 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.41 Total: -31.74 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.13 2.91 -74.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268106400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.296 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds