Wall clock time and date at job start Tue Mar 31 2020 19:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38095 * 119.58215 * 2 1 4 4 C 1.38779 * 119.28504 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75327 * 180.02562 * 4 3 2 6 6 C 1.38415 * 118.48786 * 0.02814 * 4 3 2 7 7 C 1.50700 * 120.44279 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47356 * 269.97891 * 7 6 4 9 9 O 1.21281 * 120.00042 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00252 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00221 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46909 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46947 * 64.99641 * 12 11 10 14 14 N 1.46499 * 109.46958 * 304.99617 * 12 11 10 15 15 C 1.36943 * 119.99763 * 155.00463 * 14 12 11 16 16 H 1.08003 * 119.99426 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99910 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00197 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47060 * 59.99522 * 19 17 15 21 21 H 1.48496 * 109.47473 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46751 * 299.99858 * 19 17 15 23 23 C 1.53002 * 109.46870 * 184.99578 * 12 11 10 24 24 C 1.52994 * 109.47073 * 300.00128 * 23 12 11 25 25 C 1.53004 * 109.46697 * 59.99940 * 23 12 11 26 26 C 1.38872 * 119.11543 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68979 * 180.02562 * 26 6 4 28 28 N 1.31930 * 119.58129 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47172 * 269.97470 * 1 2 3 30 30 H 1.09004 * 109.46841 * 29.97338 * 1 2 3 31 31 H 1.08998 * 109.47024 * 149.96876 * 1 2 3 32 32 H 1.07998 * 120.35580 * 0.05094 * 3 2 1 33 33 H 1.09002 * 109.47052 * 270.01961 * 5 4 3 34 34 H 1.08991 * 109.47366 * 30.02765 * 5 4 3 35 35 H 1.09002 * 109.46676 * 150.02888 * 5 4 3 36 36 H 1.08999 * 109.47394 * 29.98059 * 7 6 4 37 37 H 1.09006 * 109.47323 * 149.98016 * 7 6 4 38 38 H 0.96995 * 119.99495 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.46647 * 299.99546 * 11 10 8 40 40 H 1.08995 * 109.47443 * 59.99407 * 11 10 8 41 41 H 0.96996 * 120.00336 * 334.99904 * 14 12 11 42 42 H 0.96996 * 120.00489 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46874 * 179.97438 * 23 12 11 44 44 H 1.09002 * 109.46949 * 180.02562 * 24 23 12 45 45 H 1.09006 * 109.47584 * 299.99457 * 24 23 12 46 46 H 1.08997 * 109.47445 * 60.00136 * 24 23 12 47 47 H 1.08990 * 109.47154 * 60.00237 * 25 23 12 48 48 H 1.09002 * 109.46619 * 179.97438 * 25 23 12 49 49 H 1.08997 * 109.47438 * 299.99629 * 25 23 12 50 50 H 0.96701 * 113.99727 * 269.98027 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4849 0.0011 6 6 4.2305 -0.0262 0.0005 7 6 5.7363 -0.0854 0.0016 8 6 6.2394 -0.1050 -1.4187 9 8 5.4526 -0.0735 -2.3412 10 7 7.5637 -0.1576 -1.6640 11 6 8.0528 -0.1760 -3.0449 12 6 9.5816 -0.2363 -3.0436 13 1 9.9076 -1.1815 -2.6095 14 7 10.1134 0.8746 -2.2503 15 6 11.3515 0.7734 -1.6741 16 1 11.9357 -0.1257 -1.8041 17 6 11.8552 1.8257 -0.9221 18 7 11.1430 2.9212 -0.7632 19 14 13.5438 1.6874 -0.1353 20 1 14.5665 1.4795 -1.1918 21 1 13.8475 2.9364 0.6081 22 1 13.5600 0.5362 0.8026 23 6 10.0973 -0.1301 -4.4801 24 6 9.5419 -1.2902 -5.3085 25 6 9.6396 1.1967 -5.0894 26 6 3.4803 -1.1949 0.0004 27 8 4.1093 -2.3971 0.0009 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6478 2.1356 0.0008 33 1 4.5414 2.7965 -1.0264 34 1 3.7789 3.2549 0.5153 35 1 5.3038 2.3368 0.5149 36 1 6.1340 0.7895 0.5159 37 1 6.0640 -0.9891 0.5156 38 1 8.1929 -0.1824 -0.9262 39 1 7.6547 -1.0506 -3.5596 40 1 7.7255 0.7279 -3.5584 41 1 9.5886 1.6819 -2.1334 42 1 11.4951 3.6567 -0.2381 43 1 11.1865 -0.1725 -4.4792 44 1 9.9097 -1.2148 -6.3318 45 1 9.8679 -2.2355 -4.8745 46 1 8.4527 -1.2473 -5.3094 47 1 10.0353 2.0232 -4.4993 48 1 10.0074 1.2726 -6.1127 49 1 8.5505 1.2396 -5.0903 50 1 4.2916 -2.7459 -0.8824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268217590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:51 Heat of formation + Delta-G solvation = -51.502477 kcal Electronic energy + Delta-G solvation = -29588.224118 eV Core-core repulsion = 25615.370163 eV Total energy + Delta-G solvation = -3972.853955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.92504 -39.28575 -37.39837 -37.28031 -34.83103 -33.75404 -33.28470 -32.00190 -30.66433 -30.20372 -27.89953 -27.49612 -26.66612 -25.72185 -23.80588 -22.81538 -22.42048 -21.11302 -20.03390 -18.66662 -18.37271 -17.42420 -17.31709 -16.69425 -16.21378 -15.64159 -15.24353 -15.16451 -14.58729 -14.29956 -14.01467 -13.87775 -13.63965 -13.49664 -13.42095 -13.22394 -13.05187 -12.98572 -12.82616 -12.67502 -12.43116 -12.09193 -12.00998 -11.85088 -11.61225 -11.58010 -11.41830 -11.16342 -11.01221 -10.91920 -10.65044 -10.39522 -10.26639 -9.84403 -9.72132 -9.71518 -9.48599 -9.39832 -8.98324 -8.67129 -8.63144 -7.07982 -5.87074 -3.16854 0.91957 1.14974 2.88404 3.27935 3.36771 3.42448 3.43027 3.58462 3.79594 4.38756 4.49939 4.51082 4.78053 4.79642 5.05469 5.15575 5.22506 5.24878 5.33531 5.34569 5.38163 5.39538 5.46896 5.53591 5.59620 5.60280 5.67447 5.70803 5.76330 5.79956 5.94548 5.94994 6.01619 6.05993 6.14414 6.24651 6.30051 6.34569 6.41896 6.48668 6.59451 6.70389 6.84493 6.99350 7.02250 7.42252 7.61021 7.88577 7.89591 8.30505 8.51925 9.42789 9.96907 10.32856 11.34584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.002910 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.850962 B = 9621.151431 C =10624.916839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.146 3.854 3 C -0.184 4.184 4 C -0.010 4.010 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.102 4.102 8 C 0.514 3.486 9 O -0.553 6.553 10 N -0.711 5.711 11 C 0.111 3.889 12 C 0.170 3.830 13 H 0.053 0.947 14 N -0.719 5.719 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.111 4.111 24 C -0.149 4.149 25 C -0.140 4.140 26 C 0.330 3.670 27 O -0.482 6.482 28 N -0.509 5.509 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.038 0.962 49 H 0.045 0.955 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 -4.576 -0.233 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.179 4.179 6 C -0.133 4.133 7 C -0.143 4.143 8 C 0.300 3.700 9 O -0.432 6.432 10 N -0.362 5.362 11 C -0.013 4.013 12 C 0.059 3.941 13 H 0.071 0.929 14 N -0.361 5.361 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.133 4.133 24 C -0.206 4.206 25 C -0.198 4.198 26 C 0.151 3.849 27 O -0.289 6.289 28 N -0.229 5.229 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -16.732 -5.340 -0.205 17.564 hybrid contribution 1.817 0.883 0.250 2.036 sum -14.914 -4.457 0.045 15.566 Atomic orbital electron populations 1.20714 0.88680 1.03493 1.03043 1.20926 0.96600 0.87253 0.94328 1.21768 0.93916 0.99281 1.05415 1.20086 0.93665 0.94987 0.92995 1.20927 1.00114 0.93206 1.03629 1.20121 0.95624 0.92759 1.04764 1.20570 0.91574 1.06167 0.95946 1.20353 0.82599 0.76427 0.90633 1.90674 1.55637 1.50698 1.46187 1.46011 1.06640 1.73455 1.10092 1.21805 0.95641 1.01637 0.82193 1.20507 0.89295 0.93160 0.91091 0.92914 1.42431 1.18891 1.15762 1.58969 1.19160 0.93537 1.00256 1.24382 0.91221 1.24711 0.98418 0.96360 1.01006 1.69640 1.37648 1.05816 1.44670 0.86312 0.84308 0.76684 0.79101 1.21335 1.21778 1.21272 1.21722 1.01030 0.94172 0.96377 1.21923 1.00712 0.98561 0.99453 1.21767 1.00060 0.98568 0.99375 1.18794 0.86556 0.84862 0.94702 1.84686 1.76569 1.33581 1.34105 1.66951 1.09520 1.30705 1.15719 0.90401 0.90570 0.90486 0.84585 0.89839 0.90812 0.90402 0.87278 0.87253 0.75302 0.91782 0.91478 0.78055 0.93419 0.90950 0.93530 0.93222 0.92976 0.91356 0.94269 0.93613 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.17 36.01 0.37 -0.48 16 2 C 0.15 1.77 6.78 -82.60 -0.56 1.21 16 3 C -0.18 -2.07 9.44 -39.43 -0.37 -2.45 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.32 9.67 36.01 0.35 -0.97 16 6 C -0.13 -1.76 4.40 -104.32 -0.46 -2.22 16 7 C -0.10 -1.31 5.25 -29.04 -0.15 -1.46 16 8 C 0.51 7.87 7.82 -10.98 -0.09 7.78 16 9 O -0.55 -10.04 16.03 5.56 0.09 -9.95 16 10 N -0.71 -11.01 5.39 -60.29 -0.32 -11.34 16 11 C 0.11 1.80 4.51 -4.04 -0.02 1.78 16 12 C 0.17 3.00 2.27 -67.93 -0.15 2.84 16 13 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 14 N -0.72 -15.73 3.80 -53.43 -0.20 -15.94 16 15 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 16 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 19 Si 0.90 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.83 2.91 -90.62 -0.26 -2.09 16 24 C -0.15 -2.01 8.84 37.15 0.33 -1.68 16 25 C -0.14 -2.32 8.69 37.16 0.32 -2.00 16 26 C 0.33 4.75 7.72 -17.12 -0.13 4.62 16 27 O -0.48 -6.27 12.62 -18.74 -0.24 -6.51 16 28 N -0.51 -7.37 10.30 -9.54 -0.10 -7.47 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.08 0.83 6.08 -51.93 -0.32 0.51 16 36 H 0.11 1.27 6.07 -51.93 -0.32 0.96 16 37 H 0.11 1.27 7.55 -51.93 -0.39 0.88 16 38 H 0.41 6.45 8.14 -40.82 -0.33 6.12 16 39 H 0.06 0.98 6.71 -51.92 -0.35 0.64 16 40 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 41 H 0.39 9.19 7.80 -40.82 -0.32 8.87 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 47 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.04 0.72 6.32 -51.93 -0.33 0.39 16 50 H 0.40 3.94 9.06 45.56 0.41 4.35 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -31.13 405.40 -7.84 -38.97 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -7.18 Total: 17.64 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.70 Total: -2.38 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.10 Total: -60.00 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.15 Total: -16.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.13 -7.84 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268217590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.532 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds