Wall clock time and date at job start Tue Mar 31 2020 19:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38095 * 119.58215 * 2 1 4 4 C 1.38779 * 119.28504 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75327 * 180.02562 * 4 3 2 6 6 C 1.38415 * 118.48786 * 0.02814 * 4 3 2 7 7 C 1.50700 * 120.44279 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47356 * 269.97891 * 7 6 4 9 9 O 1.21281 * 120.00042 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00252 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00221 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46909 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46947 * 64.99641 * 12 11 10 14 14 N 1.46499 * 109.46958 * 304.99617 * 12 11 10 15 15 C 1.36943 * 119.99763 * 155.00463 * 14 12 11 16 16 H 1.08003 * 119.99426 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99910 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00197 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47060 * 59.99522 * 19 17 15 21 21 H 1.48496 * 109.47473 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46751 * 299.99858 * 19 17 15 23 23 C 1.53002 * 109.46870 * 184.99578 * 12 11 10 24 24 C 1.52994 * 109.47073 * 300.00128 * 23 12 11 25 25 C 1.53004 * 109.46697 * 59.99940 * 23 12 11 26 26 C 1.38872 * 119.11543 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68979 * 180.02562 * 26 6 4 28 28 N 1.31930 * 119.58129 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47172 * 269.97470 * 1 2 3 30 30 H 1.09004 * 109.46841 * 29.97338 * 1 2 3 31 31 H 1.08998 * 109.47024 * 149.96876 * 1 2 3 32 32 H 1.07998 * 120.35580 * 0.05094 * 3 2 1 33 33 H 1.09002 * 109.47052 * 270.01961 * 5 4 3 34 34 H 1.08991 * 109.47366 * 30.02765 * 5 4 3 35 35 H 1.09002 * 109.46676 * 150.02888 * 5 4 3 36 36 H 1.08999 * 109.47394 * 29.98059 * 7 6 4 37 37 H 1.09006 * 109.47323 * 149.98016 * 7 6 4 38 38 H 0.96995 * 119.99495 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.46647 * 299.99546 * 11 10 8 40 40 H 1.08995 * 109.47443 * 59.99407 * 11 10 8 41 41 H 0.96996 * 120.00336 * 334.99904 * 14 12 11 42 42 H 0.96996 * 120.00489 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46874 * 179.97438 * 23 12 11 44 44 H 1.09002 * 109.46949 * 180.02562 * 24 23 12 45 45 H 1.09006 * 109.47584 * 299.99457 * 24 23 12 46 46 H 1.08997 * 109.47445 * 60.00136 * 24 23 12 47 47 H 1.08990 * 109.47154 * 60.00237 * 25 23 12 48 48 H 1.09002 * 109.46619 * 179.97438 * 25 23 12 49 49 H 1.08997 * 109.47438 * 299.99629 * 25 23 12 50 50 H 0.96701 * 113.99727 * 269.98027 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3539 2.4849 0.0011 6 6 4.2305 -0.0262 0.0005 7 6 5.7363 -0.0854 0.0016 8 6 6.2394 -0.1050 -1.4187 9 8 5.4526 -0.0735 -2.3412 10 7 7.5637 -0.1576 -1.6640 11 6 8.0528 -0.1760 -3.0449 12 6 9.5816 -0.2363 -3.0436 13 1 9.9076 -1.1815 -2.6095 14 7 10.1134 0.8746 -2.2503 15 6 11.3515 0.7734 -1.6741 16 1 11.9357 -0.1257 -1.8041 17 6 11.8552 1.8257 -0.9221 18 7 11.1430 2.9212 -0.7632 19 14 13.5438 1.6874 -0.1353 20 1 14.5665 1.4795 -1.1918 21 1 13.8475 2.9364 0.6081 22 1 13.5600 0.5362 0.8026 23 6 10.0973 -0.1301 -4.4801 24 6 9.5419 -1.2902 -5.3085 25 6 9.6396 1.1967 -5.0894 26 6 3.4803 -1.1949 0.0004 27 8 4.1093 -2.3971 0.0009 28 7 2.1584 -1.1473 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6478 2.1356 0.0008 33 1 4.5414 2.7965 -1.0264 34 1 3.7789 3.2549 0.5153 35 1 5.3038 2.3368 0.5149 36 1 6.1340 0.7895 0.5159 37 1 6.0640 -0.9891 0.5156 38 1 8.1929 -0.1824 -0.9262 39 1 7.6547 -1.0506 -3.5596 40 1 7.7255 0.7279 -3.5584 41 1 9.5886 1.6819 -2.1334 42 1 11.4951 3.6567 -0.2381 43 1 11.1865 -0.1725 -4.4792 44 1 9.9097 -1.2148 -6.3318 45 1 9.8679 -2.2355 -4.8745 46 1 8.4527 -1.2473 -5.3094 47 1 10.0353 2.0232 -4.4993 48 1 10.0074 1.2726 -6.1127 49 1 8.5505 1.2396 -5.0903 50 1 4.2916 -2.7459 -0.8824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268217590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:50 Heat of formation + Delta-G solvation = -74.458689 kcal Electronic energy + Delta-G solvation = -29589.219574 eV Core-core repulsion = 25615.370163 eV Total energy + Delta-G solvation = -3973.849411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90539 -40.53720 -38.80143 -38.25429 -35.78686 -35.14342 -35.00412 -32.92728 -32.21811 -31.34496 -29.04869 -28.57327 -27.92659 -26.81589 -25.46458 -24.07012 -23.62596 -22.09301 -21.23028 -20.03048 -19.34851 -19.26317 -18.28902 -17.92008 -17.53719 -16.73258 -16.63487 -16.28033 -16.07798 -15.44132 -15.28466 -15.11401 -14.95715 -14.88525 -14.50583 -14.36399 -14.09195 -14.01925 -13.83818 -13.76681 -13.63663 -13.18046 -12.88120 -12.83173 -12.79771 -12.78229 -12.65911 -12.52399 -12.48462 -12.41295 -12.18451 -12.11500 -11.86341 -11.50034 -11.20602 -11.02506 -10.81807 -10.44462 -10.37454 -9.95083 -9.61425 -8.94685 -7.88287 -5.15538 -0.02023 0.20124 1.51451 1.52315 1.57646 1.65490 2.25239 2.50329 2.59992 2.83790 3.45216 3.46684 3.67816 3.82726 3.86443 3.91001 3.92293 4.02626 4.24143 4.25362 4.36290 4.38028 4.45688 4.47963 4.54439 4.57011 4.65446 4.72221 4.75984 4.80593 4.82281 4.87712 4.95880 5.01125 5.10282 5.11505 5.17245 5.23206 5.25722 5.31803 5.33999 5.49613 5.57022 5.63289 5.64621 5.68955 6.32519 6.51060 6.62267 6.95096 7.26451 7.40893 8.13113 8.38343 9.33832 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.002910 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.850962 B = 9621.151431 C =10624.916839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.021 4.021 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.093 4.093 8 C 0.518 3.482 9 O -0.581 6.581 10 N -0.710 5.710 11 C 0.122 3.878 12 C 0.171 3.829 13 H 0.055 0.945 14 N -0.723 5.723 15 C -0.230 4.230 16 H 0.074 0.926 17 C -0.066 4.066 18 N -0.963 5.963 19 Si 0.961 3.039 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.279 1.279 23 C -0.108 4.108 24 C -0.140 4.140 25 C -0.134 4.134 26 C 0.311 3.689 27 O -0.489 6.489 28 N -0.536 5.536 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.374 0.626 42 H 0.248 0.752 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -5.105 -0.489 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.002 4.002 3 C -0.202 4.202 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.150 4.150 7 C -0.133 4.133 8 C 0.306 3.694 9 O -0.462 6.462 10 N -0.361 5.361 11 C -0.002 4.002 12 C 0.062 3.938 13 H 0.073 0.927 14 N -0.363 5.363 15 C -0.362 4.362 16 H 0.092 0.908 17 C -0.259 4.259 18 N -0.614 5.614 19 Si 0.791 3.209 20 H -0.212 1.212 21 H -0.229 1.229 22 H -0.205 1.205 23 C -0.129 4.129 24 C -0.198 4.198 25 C -0.191 4.191 26 C 0.132 3.868 27 O -0.298 6.298 28 N -0.257 5.257 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.247 0.753 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.207 0.793 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -17.666 -5.923 -0.487 18.638 hybrid contribution 2.036 1.002 0.263 2.284 sum -15.629 -4.921 -0.224 16.387 Atomic orbital electron populations 1.20822 0.86088 1.04488 1.04227 1.21623 0.98392 0.86972 0.93241 1.22142 0.93581 1.00408 1.04081 1.20415 0.94600 0.95167 0.92712 1.20942 1.00306 0.93176 1.03190 1.20241 0.95805 0.93187 1.05812 1.20520 0.91462 1.07136 0.94210 1.20709 0.82027 0.75314 0.91383 1.90656 1.56189 1.51997 1.47320 1.46006 1.06869 1.73437 1.09784 1.21650 0.94288 1.01594 0.82702 1.20646 0.90230 0.91601 0.91273 0.92728 1.42490 1.17991 1.16401 1.59431 1.19465 0.94251 0.99760 1.22737 0.90804 1.25332 1.01347 0.96556 1.02639 1.69779 1.38984 1.06438 1.46149 0.85409 0.81067 0.76176 0.78222 1.21235 1.22857 1.20492 1.21617 0.99833 0.95563 0.95929 1.21838 1.01006 0.97340 0.99628 1.21689 1.00428 0.97295 0.99698 1.19021 0.86951 0.85309 0.95479 1.84645 1.76566 1.33476 1.35114 1.67005 1.09696 1.32138 1.16830 0.88976 0.88122 0.90938 0.81414 0.90930 0.88310 0.90657 0.86248 0.86194 0.75343 0.90373 0.92744 0.79340 0.94293 0.92930 0.92106 0.92252 0.92251 0.94775 0.92550 0.92825 0.72975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 71.24 0.72 -0.70 16 2 C 0.13 3.07 6.78 42.51 0.29 3.36 16 3 C -0.18 -3.78 9.44 22.37 0.21 -3.57 16 4 C -0.02 -0.51 5.91 -19.69 -0.12 -0.63 16 5 C -0.12 -2.44 9.67 71.24 0.69 -1.75 16 6 C -0.15 -3.96 4.40 -19.67 -0.09 -4.04 16 7 C -0.09 -2.35 5.25 29.10 0.15 -2.20 16 8 C 0.52 15.68 7.82 87.65 0.69 16.37 16 9 O -0.58 -20.94 16.03 -3.03 -0.05 -20.99 16 10 N -0.71 -21.70 5.39 -463.05 -2.49 -24.19 16 11 C 0.12 3.84 4.51 86.38 0.39 4.23 16 12 C 0.17 5.92 2.27 44.99 0.10 6.02 16 13 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 14 N -0.72 -31.75 3.80 -322.94 -1.23 -32.98 16 15 C -0.23 -11.48 9.93 84.03 0.83 -10.64 16 16 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 17 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 18 N -0.96 -54.75 13.06 21.65 0.28 -54.47 16 19 Si 0.96 43.70 29.55 68.60 2.03 45.73 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.11 -3.43 2.91 -10.79 -0.03 -3.46 16 24 C -0.14 -3.44 8.84 71.98 0.64 -2.81 16 25 C -0.13 -4.34 8.69 71.98 0.63 -3.71 16 26 C 0.31 8.94 7.72 84.78 0.65 9.59 16 27 O -0.49 -12.78 12.62 -89.96 -1.14 -13.92 16 28 N -0.54 -15.33 10.30 -296.96 -3.06 -18.39 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 0.94 8.08 -2.38 -0.02 0.92 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.07 1.55 6.08 -2.39 -0.01 1.53 16 36 H 0.12 2.73 6.07 -2.39 -0.01 2.72 16 37 H 0.12 2.73 7.55 -2.38 -0.02 2.71 16 38 H 0.41 12.76 8.14 -92.71 -0.75 12.01 16 39 H 0.08 2.27 6.71 -2.38 -0.02 2.25 16 40 H 0.05 1.88 6.17 -2.39 -0.01 1.86 16 41 H 0.37 18.17 7.80 -92.71 -0.72 17.45 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 47 H 0.03 1.32 7.60 -2.39 -0.02 1.31 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 49 H 0.05 1.63 6.32 -2.39 -0.02 1.62 16 50 H 0.41 8.19 9.06 -74.06 -0.67 7.51 16 Total: -1.00 -67.15 405.40 -0.59 -67.74 By element: Atomic # 1 Polarization: 49.60 SS G_CDS: -1.17 Total: 48.44 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.23 Total: 3.03 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -6.50 Total: -130.03 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.18 Total: -34.91 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.15 -0.59 -67.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268217590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.719 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds