Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.64160 * 2 1 4 4 O 1.21283 * 119.99880 * 119.99645 * 3 2 1 5 5 N 1.34776 * 119.99806 * 300.00366 * 3 2 1 6 6 C 1.46504 * 119.99479 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46715 * 179.97438 * 6 5 3 8 8 H 1.08995 * 112.74531 * 75.76463 * 7 6 5 9 9 C 1.53508 * 113.47366 * 206.61874 * 7 6 5 10 10 C 1.53519 * 83.57710 * 140.79025 * 9 7 6 11 11 N 1.47483 * 113.47578 * 305.00080 * 7 6 5 12 12 C 1.46890 * 111.00330 * 106.53144 * 11 7 6 13 13 C 1.50705 * 109.47100 * 169.99997 * 12 11 7 14 14 O 1.21294 * 119.99845 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99895 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99922 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99836 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47084 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46992 * 119.99924 * 20 18 16 23 23 H 1.48490 * 109.47514 * 240.00084 * 20 18 16 24 24 C 1.53021 * 109.64534 * 239.57920 * 2 1 3 25 25 C 1.50062 * 110.14793 * 289.75334 * 24 2 1 26 26 C 1.29449 * 124.07770 * 342.86425 * 25 24 2 27 27 C 1.50069 * 124.07016 * 0.44992 * 26 25 24 28 28 C 1.53004 * 110.15741 * 342.90235 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.41878 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.42069 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.42050 * 1 2 3 32 32 H 0.96993 * 119.99760 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.46942 * 299.98974 * 6 5 3 34 34 H 1.08997 * 109.47642 * 59.99827 * 6 5 3 35 35 H 1.09004 * 114.17037 * 254.43105 * 9 7 6 36 36 H 1.08994 * 114.17326 * 27.14322 * 9 7 6 37 37 H 1.09000 * 113.47591 * 219.20867 * 10 9 7 38 38 H 1.09001 * 113.47426 * 88.73907 * 10 9 7 39 39 H 1.09009 * 109.46924 * 289.99438 * 12 11 7 40 40 H 1.08994 * 109.47623 * 49.99712 * 12 11 7 41 41 H 0.97007 * 120.00101 * 0.02562 * 15 13 12 42 42 H 0.97004 * 120.00037 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.35511 * 49.95768 * 24 2 1 44 44 H 1.08997 * 109.36051 * 169.68080 * 24 2 1 45 45 H 1.08004 * 117.96292 * 162.84464 * 25 24 2 46 46 H 1.07999 * 117.96498 * 180.46883 * 26 25 24 47 47 H 1.09004 * 109.35773 * 103.09404 * 27 26 25 48 48 H 1.09003 * 109.35493 * 222.81764 * 27 26 25 49 49 H 1.08998 * 109.63090 * 289.73022 * 28 27 26 50 50 H 1.09005 * 109.65045 * 169.09748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7349 1.8140 0.9097 5 7 1.7133 2.2502 -1.0108 6 6 2.2054 3.6301 -1.0104 7 6 1.6980 4.3527 -2.2601 8 1 0.6462 4.6294 -2.1890 9 6 2.6061 5.5054 -2.7108 10 6 2.2725 4.9893 -4.1177 11 7 2.0402 3.6622 -3.5176 12 6 0.8568 3.0192 -4.1040 13 6 1.1833 2.5388 -5.4945 14 8 2.2927 2.7152 -5.9522 15 7 0.2427 1.9131 -6.2296 16 6 0.5396 1.4765 -7.4948 17 1 1.5274 1.6336 -7.9023 18 6 -0.4303 0.8320 -8.2528 19 7 -1.6323 0.6413 -7.7571 20 14 -0.0260 0.2378 -9.9770 21 1 1.3848 0.5725 -10.2978 22 1 -0.2141 -1.2335 -10.0503 23 1 -0.9269 0.9012 -10.9532 24 6 2.0444 -0.7297 -1.2427 25 6 1.7698 -2.2006 -1.1292 26 6 1.4813 -2.8011 -0.0192 27 6 1.3718 -2.1083 1.3075 28 6 2.0457 -0.7362 1.2431 29 1 -0.3633 -1.0276 0.0075 30 1 -0.3633 0.5073 -0.8938 31 1 -0.3634 0.5204 0.8862 32 1 1.1550 1.9345 -1.7384 33 1 1.8431 4.1448 -0.1206 34 1 3.2953 3.6273 -1.0102 35 1 2.2093 6.4972 -2.4937 36 1 3.6520 5.3865 -2.4282 37 1 3.1208 5.0141 -4.8017 38 1 1.3742 5.4369 -4.5427 39 1 0.5608 2.1709 -3.4866 40 1 0.0385 3.7377 -4.1506 41 1 -0.6446 1.7724 -5.8637 42 1 -2.3095 0.1917 -8.2864 43 1 1.5428 -0.3357 -2.1266 44 1 3.1187 -0.5710 -1.3362 45 1 1.8153 -2.7953 -2.0296 46 1 1.3091 -3.8668 -0.0499 47 1 0.3198 -1.9822 1.5635 48 1 1.8597 -2.7129 2.0721 49 1 3.1261 -0.8618 1.1726 50 1 1.7977 -0.1638 2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269241677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = -30.243663 kcal Electronic energy + Delta-G solvation = -29983.028855 eV Core-core repulsion = 26011.096752 eV Total energy + Delta-G solvation = -3971.932103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.82481 -40.13693 -38.02665 -37.70866 -34.58045 -33.96196 -32.50144 -31.43773 -30.98794 -30.63311 -28.22767 -27.28799 -25.86894 -23.91755 -23.79488 -23.32369 -22.08533 -20.14007 -19.58244 -19.31987 -17.96578 -17.64719 -17.17573 -16.33015 -16.12190 -15.87028 -15.48688 -15.03365 -14.91986 -14.64853 -14.49181 -14.21333 -13.96799 -13.87703 -13.67923 -13.43754 -13.06128 -13.01157 -12.65429 -12.39624 -12.30791 -12.06820 -11.91965 -11.78733 -11.68824 -11.54609 -11.41039 -11.13073 -11.04428 -10.88308 -10.78473 -10.53866 -10.38659 -10.36854 -10.27319 -9.59081 -9.56208 -9.09418 -9.01234 -8.80884 -8.32142 -8.02258 -6.47373 -3.88174 2.20246 2.66819 3.11883 3.14184 3.23592 3.30539 3.80836 3.94200 4.17511 4.38250 4.42351 4.51032 4.67059 4.74127 4.90768 4.92281 5.00618 5.03258 5.14524 5.17106 5.20895 5.31632 5.36240 5.37254 5.45572 5.47745 5.54150 5.59476 5.66709 5.69782 5.72943 5.77965 5.79576 5.85557 5.91460 5.96385 6.01998 6.09229 6.16681 6.18861 6.21847 6.41625 6.55301 6.56545 6.85168 7.14370 7.50236 7.51846 7.99889 8.24124 8.54933 9.12572 9.47431 9.98927 10.70278 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.003583 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.883171 B = 7813.186143 C =10229.943893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C 0.524 3.476 4 O -0.546 6.546 5 N -0.719 5.719 6 C 0.141 3.859 7 C 0.003 3.997 8 H 0.082 0.918 9 C -0.136 4.136 10 C 0.013 3.987 11 N -0.435 5.435 12 C 0.008 3.992 13 C 0.443 3.557 14 O -0.575 6.575 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.024 3.976 19 N -0.901 5.901 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.081 4.081 25 C -0.144 4.144 26 C -0.163 4.163 27 C -0.091 4.091 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 0.772 16.855 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C 0.311 3.689 4 O -0.424 6.424 5 N -0.370 5.370 6 C 0.016 3.984 7 C -0.107 4.107 8 H 0.100 0.900 9 C -0.174 4.174 10 C -0.116 4.116 11 N -0.158 5.158 12 C -0.124 4.124 13 C 0.228 3.772 14 O -0.459 6.459 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.542 5.542 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.119 4.119 25 C -0.162 4.162 26 C -0.181 4.181 27 C -0.128 4.128 28 C -0.131 4.131 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.345 0.545 17.057 17.226 hybrid contribution -1.605 -0.183 -1.260 2.049 sum 0.740 0.362 15.797 15.818 Atomic orbital electron populations 1.21925 0.92380 1.03468 1.02218 1.20845 0.97375 0.91729 0.98153 1.20500 0.79788 0.87153 0.81507 1.90666 1.38075 1.77381 1.36233 1.45984 1.53548 1.12420 1.25098 1.21313 0.99819 0.81068 0.96154 1.23813 0.99401 0.95043 0.92444 0.90027 1.23196 1.00491 0.96935 0.96770 1.23587 1.02342 0.89087 0.96536 1.68878 1.29400 1.15822 1.01695 1.22540 0.92978 0.99865 0.97011 1.19586 0.86302 0.84626 0.86649 1.90540 1.22282 1.60560 1.72502 1.41869 1.12648 1.50849 1.14655 1.19740 0.99438 1.33665 0.89970 0.87883 1.25246 0.94915 0.97412 1.00244 1.69612 1.03306 1.42961 1.38359 0.85818 0.78803 0.78286 0.81577 1.19202 1.20706 1.20742 1.20515 1.01929 0.92977 0.96429 1.22009 1.00164 0.95777 0.98210 1.22021 1.02058 0.99544 0.94472 1.20519 1.01138 0.95543 0.95606 1.21429 1.00575 0.94728 0.96352 0.90649 0.92154 0.92171 0.76342 0.91379 0.90833 0.90521 0.88634 0.88871 0.91573 0.90040 0.92523 0.77571 0.91898 0.90075 0.90164 0.87384 0.87937 0.90637 0.90980 0.91208 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.73 37.16 0.29 -1.09 16 2 C -0.08 -0.87 0.63 -155.44 -0.10 -0.97 16 3 C 0.52 7.07 6.47 -10.98 -0.07 7.00 16 4 O -0.55 -9.01 15.92 5.56 0.09 -8.92 16 5 N -0.72 -8.92 5.27 -60.29 -0.32 -9.24 16 6 C 0.14 1.67 5.82 -4.04 -0.02 1.65 16 7 C 0.00 0.04 3.26 -71.43 -0.23 -0.20 16 8 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 9 C -0.14 -1.45 8.00 -26.20 -0.21 -1.66 16 10 C 0.01 0.19 6.71 -7.53 -0.05 0.14 16 11 N -0.44 -6.65 5.63 -237.92 -1.34 -7.99 16 12 C 0.01 0.14 5.07 -4.98 -0.03 0.11 16 13 C 0.44 10.00 7.62 -10.98 -0.08 9.91 16 14 O -0.58 -15.14 15.34 5.55 0.09 -15.05 16 15 N -0.56 -13.70 5.29 -10.96 -0.06 -13.75 16 16 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 20 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.08 -0.95 4.71 -28.18 -0.13 -1.08 16 25 C -0.14 -1.55 9.41 -35.90 -0.34 -1.89 16 26 C -0.16 -1.57 9.15 -35.90 -0.33 -1.89 16 27 C -0.09 -0.81 5.48 -28.19 -0.15 -0.96 16 28 C -0.09 -1.00 4.34 -26.52 -0.12 -1.11 16 29 H 0.07 0.69 5.67 -51.93 -0.29 0.40 16 30 H 0.06 0.57 7.59 -51.93 -0.39 0.17 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 4.79 5.35 -40.82 -0.22 4.57 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.01 7.94 -51.93 -0.41 0.60 16 37 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 38 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 39 H 0.08 1.18 6.33 -51.92 -0.33 0.85 16 40 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 41 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 42 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 44 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 50 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -32.00 393.83 -9.79 -41.79 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.07 Total: 14.50 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.82 Total: 0.23 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.99 Total: -54.09 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.97 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.00 -9.79 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269241677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.542 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds