Wall clock time and date at job start Tue Mar 31 2020 18:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.64048 * 2 1 4 4 O 1.21281 * 119.99937 * 114.09343 * 3 2 1 5 5 N 1.34775 * 119.99856 * 294.10300 * 3 2 1 6 6 C 1.46504 * 119.99756 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47010 * 179.97438 * 6 5 3 8 8 H 1.08999 * 112.74368 * 285.33560 * 7 6 5 9 9 C 1.53512 * 113.47327 * 154.55907 * 7 6 5 10 10 C 1.53704 * 83.51004 * 219.18153 * 9 7 6 11 11 N 1.47474 * 87.92560 * 26.02806 * 10 9 7 12 12 C 1.46902 * 111.00034 * 221.30401 * 11 10 9 13 13 C 1.50704 * 109.46630 * 265.97039 * 12 11 10 14 14 O 1.21288 * 120.00123 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99732 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99878 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99876 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00283 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99714 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00260 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47404 * 59.99478 * 20 18 16 22 22 H 1.48499 * 109.47255 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47229 * 299.99297 * 20 18 16 24 24 C 1.53023 * 109.81675 * 120.52754 * 2 1 3 25 25 C 1.50071 * 110.14586 * 169.22123 * 24 2 1 26 26 C 1.29439 * 124.07666 * 342.87595 * 25 24 2 27 27 C 1.50067 * 124.07496 * 0.46542 * 26 25 24 28 28 C 1.53022 * 110.14920 * 342.86999 * 27 26 25 29 29 H 1.09000 * 109.46776 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47063 * 299.99973 * 1 2 3 32 32 H 0.96999 * 120.00183 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47417 * 59.99954 * 6 5 3 34 34 H 1.09001 * 109.47237 * 299.99347 * 6 5 3 35 35 H 1.08995 * 114.17367 * 332.79660 * 9 7 6 36 36 H 1.09004 * 114.16565 * 105.50294 * 9 7 6 37 37 H 1.09000 * 113.47859 * 271.26193 * 10 9 7 38 38 H 1.09001 * 113.53498 * 140.80120 * 10 9 7 39 39 H 1.09003 * 109.47268 * 25.96289 * 12 11 10 40 40 H 1.08996 * 109.47447 * 145.97035 * 12 11 10 41 41 H 0.96998 * 120.00008 * 359.97438 * 15 13 12 42 42 H 0.97000 * 119.99916 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.35723 * 289.43008 * 24 2 1 44 44 H 1.09000 * 109.35203 * 49.01986 * 24 2 1 45 45 H 1.07998 * 117.95748 * 162.88911 * 25 24 2 46 46 H 1.07999 * 117.96163 * 180.43873 * 26 25 24 47 47 H 1.09001 * 109.35821 * 222.66556 * 27 26 25 48 48 H 1.08997 * 109.24887 * 103.01154 * 27 26 25 49 49 H 1.09004 * 109.64110 * 289.75083 * 28 27 26 50 50 H 1.08996 * 109.64466 * 169.12365 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0366 1.4194 0.0000 4 8 2.6442 1.8464 0.9588 5 7 1.8142 2.2142 -1.0654 6 6 2.3061 3.5942 -1.0652 7 6 1.9234 4.2723 -2.3823 8 1 2.5335 3.9380 -3.2213 9 6 1.8155 5.7999 -2.2748 10 6 0.6073 5.6054 -3.2049 11 7 0.4752 4.2414 -2.6599 12 6 0.1637 3.2773 -3.7236 13 6 -1.3293 3.0914 -3.8114 14 8 -2.0616 3.7016 -3.0614 15 7 -1.8507 2.2470 -4.7234 16 6 -3.2088 2.0775 -4.8030 17 1 -3.8608 2.6202 -4.1346 18 6 -3.7464 1.2066 -5.7429 19 7 -2.9530 0.5459 -6.5558 20 14 -5.5968 0.9762 -5.8518 21 1 -6.2407 2.2785 -6.1597 22 1 -5.9119 0.0021 -6.9274 23 1 -6.1092 0.4651 -4.5550 24 6 2.0488 -0.7313 1.2401 25 6 3.5261 -0.9669 1.1209 26 6 4.1845 -0.8955 0.0088 27 6 3.5644 -0.5574 -1.3153 28 6 2.0457 -0.7314 -1.2458 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3284 1.8726 -1.8324 33 1 3.3909 3.5932 -0.9593 34 1 1.8602 4.1387 -0.2328 35 1 1.5584 6.1602 -1.2788 36 1 2.6471 6.3390 -2.7286 37 1 0.8663 5.6268 -4.2634 38 1 -0.2360 6.2527 -2.9641 39 1 0.5396 3.6524 -4.6755 40 1 0.6362 2.3215 -3.4975 41 1 -1.2651 1.7594 -5.3235 42 1 -3.3283 -0.0617 -7.2122 43 1 1.8495 -0.1274 2.1254 44 1 1.5368 -1.6888 1.3353 45 1 4.0739 -1.2114 2.0190 46 1 5.2463 -1.0911 0.0355 47 1 3.9689 -1.2173 -2.0828 48 1 3.7984 0.4767 -1.5680 49 1 1.8012 -1.7913 -1.1759 50 1 1.5868 -0.3045 -2.1375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269241680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:16 Heat of formation + Delta-G solvation = -28.159381 kcal Electronic energy + Delta-G solvation = -30389.217314 eV Core-core repulsion = 26417.375592 eV Total energy + Delta-G solvation = -3971.841722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.86618 -40.12472 -37.82722 -37.29331 -34.53424 -33.93344 -32.98814 -31.41492 -30.92826 -30.62861 -28.29743 -26.64935 -25.86281 -23.85461 -23.79305 -23.20734 -22.27503 -20.07954 -19.60484 -19.31598 -18.28467 -17.94185 -16.46259 -16.27219 -16.03579 -15.93585 -15.43399 -15.10362 -15.04633 -14.59181 -14.29804 -14.06565 -13.85612 -13.79562 -13.65215 -13.40068 -12.96446 -12.69716 -12.53880 -12.46029 -12.24487 -12.10655 -11.98084 -11.81072 -11.62849 -11.59102 -11.54719 -11.33228 -11.08047 -10.90076 -10.55410 -10.47513 -10.46666 -10.24983 -10.23776 -9.52845 -9.51500 -9.05945 -8.89065 -8.82421 -8.24878 -7.99411 -6.44803 -3.85555 2.30135 2.80845 3.17455 3.21756 3.23773 3.28151 3.84207 3.91662 4.19632 4.39968 4.44950 4.57193 4.61604 4.73989 4.94247 4.95774 5.03312 5.09254 5.15671 5.22218 5.26264 5.28495 5.36816 5.37435 5.43846 5.56664 5.58519 5.63458 5.68310 5.72001 5.74703 5.78144 5.81209 5.87811 5.93390 5.99498 6.08142 6.09389 6.14828 6.21552 6.21854 6.41488 6.59372 6.61216 6.92619 7.13287 7.52098 7.61442 8.02388 8.36072 8.58568 9.15453 9.50632 10.03110 10.72814 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.003645 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.679401 B = 7679.810771 C = 9493.959712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C 0.530 3.470 4 O -0.543 6.543 5 N -0.720 5.720 6 C 0.142 3.858 7 C 0.004 3.996 8 H 0.081 0.919 9 C -0.133 4.133 10 C 0.004 3.996 11 N -0.431 5.431 12 C 0.007 3.993 13 C 0.445 3.555 14 O -0.571 6.571 15 N -0.566 5.566 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.024 3.976 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.069 4.069 25 C -0.136 4.136 26 C -0.166 4.166 27 C -0.094 4.094 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.391 0.609 42 H 0.272 0.728 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.923 -0.788 7.394 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C 0.316 3.684 4 O -0.420 6.420 5 N -0.373 5.373 6 C 0.018 3.982 7 C -0.106 4.106 8 H 0.099 0.901 9 C -0.171 4.171 10 C -0.125 4.125 11 N -0.154 5.154 12 C -0.125 4.125 13 C 0.230 3.770 14 O -0.454 6.454 15 N -0.203 5.203 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.178 4.178 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.106 4.106 25 C -0.154 4.154 26 C -0.184 4.184 27 C -0.131 4.131 28 C -0.147 4.147 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.307 -0.374 8.953 16.881 hybrid contribution -0.198 -0.617 -1.736 1.853 sum 14.109 -0.991 7.216 15.878 Atomic orbital electron populations 1.21850 0.91659 1.03105 1.03366 1.20904 0.97313 0.92314 0.97788 1.20340 0.78731 0.87200 0.82097 1.90652 1.41237 1.75765 1.34308 1.45941 1.58358 1.12852 1.20124 1.21273 0.98406 0.81680 0.96885 1.23779 0.92332 0.96808 0.97726 0.90086 1.23183 0.98399 0.94037 1.01529 1.23790 0.98604 0.92692 0.97367 1.68868 1.13362 1.01970 1.31155 1.22570 0.97769 0.97509 0.94643 1.19602 0.88463 0.84482 0.84480 1.90541 1.60762 1.49939 1.44154 1.41860 1.07992 1.38740 1.31699 1.19634 0.82214 1.23569 1.17412 0.88039 1.25228 1.00318 0.96338 0.95903 1.69598 1.35636 1.28121 1.21033 0.85945 0.82327 0.78189 0.77941 1.19940 1.20972 1.19873 1.20349 0.93301 0.99809 0.97150 1.21911 0.96022 0.99880 0.97566 1.21905 0.99356 1.02500 0.94600 1.20488 0.94916 1.01761 0.95931 1.21720 0.95406 1.01270 0.96351 0.91301 0.91240 0.91904 0.76415 0.91521 0.90913 0.88568 0.90469 0.91417 0.89181 0.92072 0.90354 0.77634 0.91842 0.89976 0.90216 0.88078 0.88280 0.90747 0.91100 0.90325 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.46 37.16 0.31 -1.44 16 2 C -0.08 -0.97 0.66 -155.44 -0.10 -1.07 16 3 C 0.53 7.57 4.73 -10.98 -0.05 7.52 16 4 O -0.54 -9.30 15.33 5.56 0.09 -9.21 16 5 N -0.72 -9.53 5.21 -60.29 -0.31 -9.85 16 6 C 0.14 1.76 5.80 -4.04 -0.02 1.74 16 7 C 0.00 0.04 3.21 -71.43 -0.23 -0.19 16 8 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 9 C -0.13 -1.37 8.01 -26.10 -0.21 -1.58 16 10 C 0.00 0.06 7.71 -7.45 -0.06 0.00 16 11 N -0.43 -6.60 5.42 -237.71 -1.29 -7.89 16 12 C 0.01 0.12 5.07 -4.97 -0.03 0.09 16 13 C 0.44 10.07 7.85 -10.98 -0.09 9.99 16 14 O -0.57 -15.25 16.01 5.55 0.09 -15.17 16 15 N -0.57 -13.73 5.29 -10.96 -0.06 -13.79 16 16 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 17 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 20 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.07 -0.79 4.55 -28.17 -0.13 -0.91 16 25 C -0.14 -1.54 9.08 -35.90 -0.33 -1.86 16 26 C -0.17 -1.81 9.61 -35.90 -0.35 -2.16 16 27 C -0.09 -0.98 5.59 -28.18 -0.16 -1.13 16 28 C -0.11 -1.17 4.71 -26.52 -0.12 -1.29 16 29 H 0.07 0.95 8.01 -51.93 -0.42 0.54 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 5.21 5.39 -40.82 -0.22 4.99 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 35 H 0.10 1.00 7.95 -51.93 -0.41 0.59 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 40 H 0.08 1.12 6.24 -51.93 -0.32 0.80 16 41 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 42 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 44 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 45 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 49 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.07 0.76 7.55 -51.93 -0.39 0.36 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -32.50 396.65 -9.79 -42.28 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -8.19 Total: 15.13 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.79 Total: -0.03 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.94 Total: -54.63 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.50 -9.79 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269241680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.126 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds