Wall clock time and date at job start Tue Mar 31 2020 18:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.64048 * 2 1 4 4 O 1.21281 * 119.99937 * 114.09343 * 3 2 1 5 5 N 1.34775 * 119.99856 * 294.10300 * 3 2 1 6 6 C 1.46504 * 119.99756 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47010 * 179.97438 * 6 5 3 8 8 H 1.08999 * 112.74368 * 285.33560 * 7 6 5 9 9 C 1.53512 * 113.47327 * 154.55907 * 7 6 5 10 10 C 1.53704 * 83.51004 * 219.18153 * 9 7 6 11 11 N 1.47474 * 87.92560 * 26.02806 * 10 9 7 12 12 C 1.46902 * 111.00034 * 221.30401 * 11 10 9 13 13 C 1.50704 * 109.46630 * 265.97039 * 12 11 10 14 14 O 1.21288 * 120.00123 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99732 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99878 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99876 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00283 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99714 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00260 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47404 * 59.99478 * 20 18 16 22 22 H 1.48499 * 109.47255 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47229 * 299.99297 * 20 18 16 24 24 C 1.53023 * 109.81675 * 120.52754 * 2 1 3 25 25 C 1.50071 * 110.14586 * 169.22123 * 24 2 1 26 26 C 1.29439 * 124.07666 * 342.87595 * 25 24 2 27 27 C 1.50067 * 124.07496 * 0.46542 * 26 25 24 28 28 C 1.53022 * 110.14920 * 342.86999 * 27 26 25 29 29 H 1.09000 * 109.46776 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47063 * 299.99973 * 1 2 3 32 32 H 0.96999 * 120.00183 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47417 * 59.99954 * 6 5 3 34 34 H 1.09001 * 109.47237 * 299.99347 * 6 5 3 35 35 H 1.08995 * 114.17367 * 332.79660 * 9 7 6 36 36 H 1.09004 * 114.16565 * 105.50294 * 9 7 6 37 37 H 1.09000 * 113.47859 * 271.26193 * 10 9 7 38 38 H 1.09001 * 113.53498 * 140.80120 * 10 9 7 39 39 H 1.09003 * 109.47268 * 25.96289 * 12 11 10 40 40 H 1.08996 * 109.47447 * 145.97035 * 12 11 10 41 41 H 0.96998 * 120.00008 * 359.97438 * 15 13 12 42 42 H 0.97000 * 119.99916 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.35723 * 289.43008 * 24 2 1 44 44 H 1.09000 * 109.35203 * 49.01986 * 24 2 1 45 45 H 1.07998 * 117.95748 * 162.88911 * 25 24 2 46 46 H 1.07999 * 117.96163 * 180.43873 * 26 25 24 47 47 H 1.09001 * 109.35821 * 222.66556 * 27 26 25 48 48 H 1.08997 * 109.24887 * 103.01154 * 27 26 25 49 49 H 1.09004 * 109.64110 * 289.75083 * 28 27 26 50 50 H 1.08996 * 109.64466 * 169.12365 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0366 1.4194 0.0000 4 8 2.6442 1.8464 0.9588 5 7 1.8142 2.2142 -1.0654 6 6 2.3061 3.5942 -1.0652 7 6 1.9234 4.2723 -2.3823 8 1 2.5335 3.9380 -3.2213 9 6 1.8155 5.7999 -2.2748 10 6 0.6073 5.6054 -3.2049 11 7 0.4752 4.2414 -2.6599 12 6 0.1637 3.2773 -3.7236 13 6 -1.3293 3.0914 -3.8114 14 8 -2.0616 3.7016 -3.0614 15 7 -1.8507 2.2470 -4.7234 16 6 -3.2088 2.0775 -4.8030 17 1 -3.8608 2.6202 -4.1346 18 6 -3.7464 1.2066 -5.7429 19 7 -2.9530 0.5459 -6.5558 20 14 -5.5968 0.9762 -5.8518 21 1 -6.2407 2.2785 -6.1597 22 1 -5.9119 0.0021 -6.9274 23 1 -6.1092 0.4651 -4.5550 24 6 2.0488 -0.7313 1.2401 25 6 3.5261 -0.9669 1.1209 26 6 4.1845 -0.8955 0.0088 27 6 3.5644 -0.5574 -1.3153 28 6 2.0457 -0.7314 -1.2458 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3284 1.8726 -1.8324 33 1 3.3909 3.5932 -0.9593 34 1 1.8602 4.1387 -0.2328 35 1 1.5584 6.1602 -1.2788 36 1 2.6471 6.3390 -2.7286 37 1 0.8663 5.6268 -4.2634 38 1 -0.2360 6.2527 -2.9641 39 1 0.5396 3.6524 -4.6755 40 1 0.6362 2.3215 -3.4975 41 1 -1.2651 1.7594 -5.3235 42 1 -3.3283 -0.0617 -7.2122 43 1 1.8495 -0.1274 2.1254 44 1 1.5368 -1.6888 1.3353 45 1 4.0739 -1.2114 2.0190 46 1 5.2463 -1.0911 0.0355 47 1 3.9689 -1.2173 -2.0828 48 1 3.7984 0.4767 -1.5680 49 1 1.8012 -1.7913 -1.1759 50 1 1.5868 -0.3045 -2.1375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269241680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:15 Heat of formation + Delta-G solvation = -51.419417 kcal Electronic energy + Delta-G solvation = -30390.225945 eV Core-core repulsion = 26417.375592 eV Total energy + Delta-G solvation = -3972.850353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.91426 -41.21649 -39.59414 -38.31574 -35.93273 -35.61904 -33.91423 -33.29641 -32.06993 -31.68332 -29.33122 -27.58952 -27.52342 -25.35523 -24.85987 -24.05248 -23.28440 -21.15802 -21.01693 -20.55547 -19.89066 -19.23838 -17.71966 -17.42747 -17.25834 -17.05983 -16.57844 -16.46892 -16.24382 -16.12866 -15.58185 -15.45919 -15.14333 -14.90505 -14.64885 -14.56786 -14.19212 -14.01457 -13.66698 -13.50963 -13.46754 -13.22664 -13.09834 -12.97585 -12.92768 -12.81709 -12.59679 -12.46345 -12.43058 -12.34222 -12.13950 -11.95662 -11.60491 -11.46874 -11.37247 -11.11545 -10.63446 -10.35803 -10.05693 -9.98058 -9.80277 -9.69911 -8.44550 -5.92386 1.39864 1.42493 1.46320 1.52273 1.69571 2.07328 2.19037 2.30260 2.81666 3.21358 3.35639 3.52490 3.55989 3.62833 3.72461 3.81127 3.98658 4.11757 4.16332 4.21188 4.27369 4.33400 4.34774 4.40577 4.43043 4.51843 4.52182 4.65660 4.69944 4.74861 4.79805 4.83854 4.88214 4.89040 4.99510 4.99991 5.08776 5.17906 5.21940 5.22750 5.26398 5.33647 5.43073 5.54501 5.76927 5.94284 6.08998 6.12577 6.53121 6.63754 7.16272 7.26314 7.59624 8.16818 8.72321 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.003645 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.679401 B = 7679.810771 C = 9493.959712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C 0.526 3.474 4 O -0.575 6.575 5 N -0.717 5.717 6 C 0.141 3.859 7 C 0.015 3.985 8 H 0.109 0.891 9 C -0.114 4.114 10 C -0.004 4.004 11 N -0.468 5.468 12 C 0.021 3.979 13 C 0.443 3.557 14 O -0.618 6.618 15 N -0.573 5.573 16 C -0.332 4.332 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.986 3.014 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.069 4.069 25 C -0.150 4.150 26 C -0.169 4.169 27 C -0.093 4.093 28 C -0.108 4.108 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.465 -1.516 6.302 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C 0.314 3.686 4 O -0.455 6.455 5 N -0.368 5.368 6 C 0.017 3.983 7 C -0.094 4.094 8 H 0.126 0.874 9 C -0.152 4.152 10 C -0.132 4.132 11 N -0.191 5.191 12 C -0.110 4.110 13 C 0.230 3.770 14 O -0.503 6.503 15 N -0.211 5.211 16 C -0.461 4.461 17 H 0.093 0.907 18 C -0.208 4.208 19 N -0.558 5.558 20 Si 0.810 3.190 21 H -0.200 1.200 22 H -0.194 1.194 23 H -0.199 1.199 24 C -0.106 4.106 25 C -0.168 4.168 26 C -0.187 4.187 27 C -0.130 4.130 28 C -0.146 4.146 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.237 0.763 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.111 0.889 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.871 -1.104 7.832 17.733 hybrid contribution -0.672 -0.336 -1.353 1.548 sum 15.199 -1.440 6.479 16.585 Atomic orbital electron populations 1.21820 0.92112 1.03848 1.01878 1.20914 0.96776 0.91296 0.99112 1.20748 0.78153 0.88051 0.81688 1.90631 1.42885 1.76554 1.35426 1.45972 1.57872 1.13114 1.19866 1.21328 0.98956 0.81102 0.96890 1.23833 0.90184 0.97563 0.97822 0.87365 1.23124 0.97887 0.93436 1.00755 1.23882 0.99102 0.91325 0.98935 1.68822 1.16401 1.02589 1.31257 1.22439 0.92686 0.99383 0.96533 1.20723 0.91151 0.82510 0.82613 1.90509 1.62891 1.51316 1.45596 1.41899 1.07217 1.39476 1.32464 1.19552 0.83581 1.24797 1.18199 0.90742 1.25905 1.04180 0.95549 0.95132 1.69647 1.37038 1.28085 1.21067 0.85094 0.77572 0.78199 0.78134 1.19994 1.19441 1.19859 1.20350 0.93919 1.00251 0.96058 1.22038 0.95980 1.00570 0.98218 1.22113 1.00040 1.01881 0.94691 1.20511 0.94573 1.01726 0.96209 1.21741 0.95711 1.01706 0.95400 0.93131 0.89397 0.92973 0.76259 0.90187 0.92937 0.89113 0.87034 0.89809 0.91734 0.89590 0.88111 0.77000 0.91345 0.91613 0.88406 0.87367 0.87116 0.88924 0.91842 0.89118 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.46 71.98 0.61 -2.82 16 2 C -0.08 -1.83 0.66 -52.79 -0.03 -1.86 16 3 C 0.53 14.88 4.73 87.66 0.41 15.30 16 4 O -0.58 -19.82 15.33 -3.03 -0.05 -19.86 16 5 N -0.72 -18.38 5.21 -463.04 -2.41 -20.79 16 6 C 0.14 3.32 5.80 86.38 0.50 3.82 16 7 C 0.02 0.32 3.21 42.19 0.14 0.45 16 8 H 0.11 1.71 7.91 -2.39 -0.02 1.69 16 9 C -0.11 -2.06 8.01 31.00 0.25 -1.82 16 10 C 0.00 -0.09 7.71 83.64 0.65 0.55 16 11 N -0.47 -13.80 5.42 -905.97 -4.91 -18.71 16 12 C 0.02 0.67 5.07 85.56 0.43 1.10 16 13 C 0.44 20.26 7.85 87.66 0.69 20.95 16 14 O -0.62 -34.05 16.01 -3.05 -0.05 -34.10 16 15 N -0.57 -28.12 5.29 -306.97 -1.62 -29.74 16 16 C -0.33 -18.39 9.68 84.04 0.81 -17.57 16 17 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 18 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 19 N -0.92 -47.83 13.05 21.66 0.28 -47.54 16 20 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 C -0.07 -1.52 4.55 29.66 0.14 -1.39 16 25 C -0.15 -3.23 9.08 27.04 0.25 -2.98 16 26 C -0.17 -3.41 9.61 27.04 0.26 -3.15 16 27 C -0.09 -1.74 5.59 29.66 0.17 -1.58 16 28 C -0.11 -2.11 4.71 30.73 0.14 -1.97 16 29 H 0.05 1.42 8.01 -2.39 -0.02 1.40 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.40 10.01 5.39 -92.71 -0.50 9.51 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.45 7.90 -2.39 -0.02 1.44 16 35 H 0.09 1.76 7.95 -2.39 -0.02 1.75 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.82 7.42 -2.39 -0.02 1.81 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 2.28 7.30 -2.39 -0.02 2.26 16 40 H 0.10 2.67 6.24 -2.39 -0.01 2.66 16 41 H 0.40 18.24 7.90 -92.71 -0.73 17.51 16 42 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 43 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 44 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 45 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.29 7.32 -2.39 -0.02 1.27 16 49 H 0.09 1.57 8.12 -2.38 -0.02 1.55 16 50 H 0.07 1.41 7.55 -2.39 -0.02 1.39 16 Total: -1.00 -72.09 396.65 -1.14 -73.23 By element: Atomic # 1 Polarization: 46.49 SS G_CDS: -0.28 Total: 46.20 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.87 Total: 7.11 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -8.66 Total: -116.79 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.10 Total: -53.97 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -72.09 -1.14 -73.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269241680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.813 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds