Wall clock time and date at job start Tue Mar 31 2020 19:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.27518 * 2 1 4 4 C 1.34777 * 120.00199 * 300.70889 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 H 1.09004 * 109.63769 * 299.72140 * 6 4 3 8 8 C 1.53023 * 109.64238 * 60.14083 * 6 4 3 9 9 C 1.50168 * 110.09300 * 168.90478 * 8 6 4 10 10 C 1.29442 * 124.14562 * 343.28195 * 9 8 6 11 11 C 1.50060 * 124.07888 * 0.24403 * 10 9 8 12 12 C 1.53025 * 110.14708 * 342.86486 * 11 10 9 13 13 C 1.54594 * 110.30487 * 237.91567 * 2 1 3 14 14 C 1.55199 * 102.80435 * 219.04804 * 13 2 1 15 15 N 1.48538 * 103.23493 * 37.43217 * 14 13 2 16 16 C 1.46900 * 111.00264 * 200.25869 * 15 14 13 17 17 C 1.50700 * 109.47046 * 287.40006 * 16 15 14 18 18 O 1.21292 * 119.99920 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00239 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00114 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00028 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99910 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00029 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47336 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47271 * 120.00332 * 24 22 20 27 27 H 1.48502 * 109.47099 * 240.00296 * 24 22 20 28 28 C 1.47902 * 105.82245 * 320.77473 * 15 14 13 29 29 H 1.08993 * 109.47672 * 59.29119 * 1 2 3 30 30 H 1.08997 * 109.47388 * 179.29944 * 1 2 3 31 31 H 1.08999 * 109.46834 * 299.29401 * 1 2 3 32 32 H 0.97000 * 119.99484 * 120.69986 * 3 2 1 33 33 H 1.09006 * 109.35632 * 289.32744 * 8 6 4 34 34 H 1.08994 * 109.35715 * 48.91527 * 8 6 4 35 35 H 1.08003 * 117.88843 * 163.03267 * 9 8 6 36 36 H 1.07997 * 117.95909 * 180.21246 * 10 9 8 37 37 H 1.09002 * 109.36115 * 222.66356 * 11 10 9 38 38 H 1.08998 * 109.36381 * 103.06911 * 11 10 9 39 39 H 1.08996 * 109.64529 * 289.75100 * 12 11 10 40 40 H 1.08999 * 109.64582 * 169.12091 * 12 11 10 41 41 H 1.09007 * 110.72544 * 337.38141 * 13 2 1 42 42 H 1.09000 * 110.73001 * 100.66841 * 13 2 1 43 43 H 1.09002 * 110.67836 * 278.99393 * 14 13 2 44 44 H 1.08999 * 110.78724 * 155.93169 * 14 13 2 45 45 H 1.09004 * 109.46691 * 47.39325 * 16 15 14 46 46 H 1.08995 * 109.47430 * 167.39997 * 16 15 14 47 47 H 0.97003 * 119.99654 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99672 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.91839 * 265.97962 * 28 15 14 50 50 H 1.08998 * 109.91904 * 144.68262 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.7121 2.2129 -1.0035 5 8 0.9992 1.8298 -1.9068 6 6 2.2394 3.6247 -1.0066 7 1 1.8956 4.1461 -0.1133 8 6 3.7692 3.6023 -1.0325 9 6 4.3007 4.9796 -1.3073 10 6 3.5925 5.9482 -1.7931 11 6 2.1385 5.8321 -2.1452 12 6 1.7392 4.3591 -2.2570 13 6 2.0665 -0.7701 -1.2284 14 6 3.2881 -1.5326 -0.6498 15 7 2.8334 -1.9217 0.7097 16 6 3.9769 -2.2225 1.5814 17 6 4.5877 -3.5381 1.1725 18 8 4.1165 -4.1638 0.2464 19 7 5.6576 -4.0195 1.8359 20 6 6.2129 -5.2166 1.4643 21 1 5.7933 -5.7737 0.6396 22 6 7.3163 -5.7126 2.1479 23 7 7.8271 -5.0345 3.1509 24 14 8.0734 -7.3433 1.6411 25 1 7.3184 -7.9037 0.4917 26 1 9.4890 -7.1304 1.2462 27 1 8.0151 -8.2920 2.7821 28 6 2.0645 -0.7674 1.2235 29 1 -0.3634 0.5248 -0.8835 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5028 0.8963 32 1 2.6080 1.6805 0.7224 33 1 4.1418 3.2527 -0.0696 34 1 4.1074 2.9245 -1.8162 35 1 5.3387 5.1749 -1.0816 36 1 4.0783 6.8991 -1.9545 37 1 1.9567 6.3290 -3.0982 38 1 1.5397 6.3109 -1.3704 39 1 2.1950 3.9223 -3.1454 40 1 0.6541 4.2774 -2.3204 41 1 1.3177 -1.4680 -1.6034 42 1 2.3773 -0.0787 -2.0117 43 1 4.1580 -0.8783 -0.5918 44 1 3.5117 -2.4158 -1.2481 45 1 4.7217 -1.4320 1.4894 46 1 3.6388 -2.2848 2.6157 47 1 6.0347 -3.5189 2.5763 48 1 8.5976 -5.3806 3.6279 49 1 2.7149 -0.1205 1.8123 50 1 1.2327 -1.1176 1.8346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278356145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:29 Heat of formation + Delta-G solvation = -80.786943 kcal Electronic energy + Delta-G solvation = -29389.371235 eV Core-core repulsion = 25415.247411 eV Total energy + Delta-G solvation = -3974.123824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.74360 -40.45526 -39.46957 -38.29828 -36.06972 -35.47001 -33.36761 -33.09393 -31.84927 -31.46759 -30.57508 -28.89906 -26.91391 -25.62271 -24.84316 -23.86952 -22.78075 -21.42909 -21.05202 -20.44624 -19.86714 -18.84183 -18.40741 -17.82796 -17.23890 -16.72270 -16.65326 -16.23133 -16.10676 -15.93290 -15.63129 -15.26390 -14.98506 -14.75791 -14.60875 -14.32571 -14.21961 -14.09639 -13.92055 -13.65079 -13.44037 -13.31914 -13.18706 -13.01813 -12.95396 -12.90333 -12.43138 -12.38791 -12.37213 -12.11896 -11.98717 -11.93938 -11.85707 -11.67995 -11.48379 -11.27519 -10.52911 -10.31051 -10.06697 -9.99091 -9.87553 -9.33087 -8.46178 -5.94127 1.36196 1.41457 1.41966 1.55332 1.66686 2.07453 2.11903 2.29670 2.84564 3.20579 3.30752 3.48582 3.60184 3.70231 3.73844 3.88500 3.93616 4.19332 4.24004 4.29089 4.29247 4.32482 4.40811 4.43963 4.48761 4.51815 4.58857 4.62756 4.72868 4.77571 4.81078 4.87312 4.92354 4.94397 5.04081 5.06561 5.09188 5.10886 5.27557 5.32055 5.34853 5.41930 5.55702 5.77267 5.83097 5.94913 6.06617 6.09768 6.59627 6.62507 7.14806 7.30353 7.58376 8.15153 8.71520 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.002272 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.428345 B =12319.766910 C =13274.548876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 N -0.710 5.710 4 C 0.518 3.482 5 O -0.569 6.569 6 C -0.100 4.100 7 H 0.119 0.881 8 C -0.080 4.080 9 C -0.164 4.164 10 C -0.158 4.158 11 C -0.090 4.090 12 C -0.099 4.099 13 C -0.112 4.112 14 C 0.046 3.954 15 N -0.511 5.511 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.039 3.961 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.077 0.923 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 25.033 -2.098 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.085 3.915 3 N -0.363 5.363 4 C 0.306 3.694 5 O -0.447 6.447 6 C -0.121 4.121 7 H 0.137 0.863 8 C -0.118 4.118 9 C -0.182 4.182 10 C -0.176 4.176 11 C -0.127 4.127 12 C -0.137 4.137 13 C -0.151 4.151 14 C -0.082 4.082 15 N -0.236 5.236 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.088 4.088 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.250 0.750 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.651 23.822 -3.221 26.293 hybrid contribution 1.637 -0.134 0.346 1.678 sum -9.014 23.688 -2.875 25.508 Atomic orbital electron populations 1.22080 0.92828 1.02725 1.02975 1.20982 0.94844 0.81226 0.94452 1.46183 1.52459 1.11160 1.26472 1.21032 0.79478 0.87984 0.80943 1.90673 1.38768 1.78124 1.37167 1.21411 0.97077 0.91423 1.02164 0.86311 1.20430 0.92146 0.96136 1.03049 1.22084 1.00383 0.94422 1.01275 1.22256 0.96318 0.99433 0.99592 1.20504 0.93932 0.95450 1.02795 1.21377 1.01004 0.95206 0.96082 1.22762 0.96888 0.98044 0.97370 1.23172 0.96454 0.97992 0.90608 1.64419 1.20699 1.36524 1.01938 1.21951 0.93187 0.94045 0.98971 1.20820 0.82140 0.89322 0.84883 1.90495 1.64306 1.62572 1.32936 1.41921 1.27323 1.20459 1.31630 1.19651 1.11712 0.98467 1.16110 0.90604 1.25993 0.96823 1.02734 0.95727 1.69669 1.24710 1.40304 1.21448 0.84908 0.77987 0.77468 0.78203 1.20031 1.19589 1.19559 1.23268 0.99035 0.90788 0.95729 0.92067 0.91571 0.90897 0.75046 0.88831 0.91937 0.86755 0.86662 0.90050 0.89468 0.93054 0.91550 0.91200 0.91194 0.93803 0.92515 0.90815 0.86684 0.76964 0.91341 0.90519 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.14 71.98 0.59 -2.52 16 2 C 0.17 3.68 0.94 4.48 0.00 3.68 16 3 N -0.71 -11.81 5.06 -418.95 -2.12 -13.93 16 4 C 0.52 10.13 6.33 87.66 0.55 10.69 16 5 O -0.57 -15.65 12.77 -3.04 -0.04 -15.69 16 6 C -0.10 -1.38 2.57 -11.40 -0.03 -1.41 16 7 H 0.12 1.17 8.13 -2.38 -0.02 1.15 16 8 C -0.08 -1.03 5.29 29.69 0.16 -0.87 16 9 C -0.16 -1.97 9.80 27.07 0.27 -1.70 16 10 C -0.16 -1.78 9.80 27.04 0.27 -1.51 16 11 C -0.09 -0.98 6.12 29.66 0.18 -0.80 16 12 C -0.10 -1.53 4.69 30.73 0.14 -1.38 16 13 C -0.11 -3.13 5.85 31.89 0.19 -2.94 16 14 C 0.05 1.48 5.94 86.74 0.52 2.00 16 15 N -0.51 -16.13 4.91 -887.00 -4.35 -20.49 16 16 C 0.05 1.65 5.19 85.56 0.44 2.10 16 17 C 0.44 20.97 7.61 87.66 0.67 21.63 16 18 O -0.62 -34.70 14.64 -3.07 -0.04 -34.74 16 19 N -0.58 -29.39 5.29 -306.98 -1.62 -31.01 16 20 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 24 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C 0.04 0.84 6.12 86.45 0.53 1.37 16 29 H 0.06 1.52 6.17 -2.39 -0.01 1.51 16 30 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 4.47 7.78 -92.71 -0.72 3.75 16 33 H 0.09 0.87 7.91 -2.38 -0.02 0.85 16 34 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.98 8.13 -2.39 -0.02 0.97 16 40 H 0.07 1.14 7.90 -2.39 -0.02 1.12 16 41 H 0.07 2.12 7.86 -2.38 -0.02 2.10 16 42 H 0.07 2.05 6.68 -2.39 -0.02 2.03 16 43 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 44 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 45 H 0.07 2.11 7.83 -2.38 -0.02 2.09 16 46 H 0.12 3.24 8.08 -2.39 -0.02 3.22 16 47 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 48 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 49 H 0.08 1.21 7.09 -2.39 -0.02 1.20 16 50 H 0.10 2.01 7.68 -2.39 -0.02 1.99 16 Total: -1.00 -72.72 392.46 -0.62 -73.34 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.50 Total: 36.27 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.75 Total: 10.10 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -7.81 Total: -114.50 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.08 Total: -50.43 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.72 -0.62 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278356145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.450 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds