Wall clock time and date at job start Tue Mar 31 2020 19:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 110.35454 * 2 1 4 4 C 1.34773 * 119.99963 * 57.85381 * 3 2 1 5 5 O 1.21283 * 120.00415 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99776 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.64420 * 300.00548 * 6 4 3 8 8 C 1.53025 * 109.64304 * 60.42670 * 6 4 3 9 9 C 1.50162 * 110.09844 * 168.90349 * 8 6 4 10 10 C 1.29445 * 124.14690 * 343.27998 * 9 8 6 11 11 C 1.50066 * 124.07503 * 0.24322 * 10 9 8 12 12 C 1.53027 * 110.14634 * 342.86791 * 11 10 9 13 13 C 1.55034 * 110.45199 * 122.31897 * 2 1 3 14 14 C 1.54930 * 102.99846 * 140.68940 * 13 2 1 15 15 N 1.48535 * 103.22755 * 322.65440 * 14 13 2 16 16 C 1.46893 * 111.00017 * 159.72165 * 15 14 13 17 17 C 1.50695 * 109.47445 * 72.60353 * 16 15 14 18 18 O 1.21294 * 120.00096 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00175 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99863 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00339 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99738 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47282 * 90.00106 * 24 22 20 26 26 H 1.48503 * 109.46700 * 210.00175 * 24 22 20 27 27 H 1.48502 * 109.47294 * 329.99542 * 24 22 20 28 28 C 1.47900 * 105.81903 * 39.20561 * 15 14 13 29 29 H 1.08992 * 109.47373 * 182.14554 * 1 2 3 30 30 H 1.08999 * 109.47063 * 302.14554 * 1 2 3 31 31 H 1.09005 * 109.46966 * 62.13864 * 1 2 3 32 32 H 0.96998 * 119.99635 * 237.86137 * 3 2 1 33 33 H 1.09004 * 109.35784 * 289.32894 * 8 6 4 34 34 H 1.08997 * 109.35682 * 48.90732 * 8 6 4 35 35 H 1.08004 * 117.88995 * 163.03216 * 9 8 6 36 36 H 1.07998 * 117.96079 * 180.21659 * 10 9 8 37 37 H 1.09000 * 109.35793 * 222.66020 * 11 10 9 38 38 H 1.09001 * 109.36238 * 103.07399 * 11 10 9 39 39 H 1.08998 * 109.64355 * 289.74761 * 12 11 10 40 40 H 1.09000 * 109.63780 * 169.12311 * 12 11 10 41 41 H 1.08998 * 110.63192 * 22.33144 * 13 2 1 42 42 H 1.09005 * 110.89526 * 259.17254 * 13 2 1 43 43 H 1.08995 * 110.66945 * 204.21634 * 14 13 2 44 44 H 1.09005 * 110.81003 * 81.15592 * 14 13 2 45 45 H 1.09007 * 109.47213 * 192.60538 * 16 15 14 46 46 H 1.09001 * 109.47242 * 312.60041 * 16 15 14 47 47 H 0.96995 * 119.99678 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00054 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.91739 * 94.02573 * 28 15 14 50 50 H 1.09002 * 109.91391 * 215.12207 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0396 1.3735 0.0000 4 6 1.6917 2.2213 0.9882 5 8 0.9572 1.8471 1.8778 6 6 2.2164 3.6340 0.9885 7 1 3.3056 3.6204 1.0271 8 6 1.7557 4.3541 -0.2807 9 6 2.0365 5.8251 -0.1702 10 6 2.2935 6.4342 0.9427 11 6 2.3520 5.7543 2.2792 12 6 1.6666 4.3880 2.2060 13 6 2.0717 -0.7766 1.2276 14 6 3.2879 -1.5412 0.6473 15 7 2.8301 -1.9262 -0.7123 16 6 3.9715 -2.2293 -1.5859 17 6 4.5784 -3.5476 -1.1804 18 8 4.1069 -4.1731 -0.2543 19 7 5.6453 -4.0318 -1.8467 20 6 6.1977 -5.2309 -1.4774 21 1 5.7778 -5.7878 -0.6527 22 6 7.2979 -5.7298 -2.1640 23 7 7.8272 -6.8794 -1.8104 24 14 8.0246 -4.7662 -3.5898 25 1 9.0723 -3.8447 -3.0816 26 1 8.6258 -5.7079 -4.5682 27 1 6.9534 -3.9803 -4.2532 28 6 2.0645 -0.7684 -1.2229 29 1 -0.3634 -1.0268 0.0385 30 1 -0.3633 0.5468 0.8701 31 1 -0.3633 0.4803 -0.9086 32 1 2.6272 1.6727 -0.7113 33 1 2.2858 3.9450 -1.1408 34 1 0.6846 4.2024 -0.4136 35 1 2.0271 6.4107 -1.0776 36 1 2.4776 7.4977 0.9070 37 1 1.8471 6.3725 3.0215 38 1 3.3936 5.6207 2.5714 39 1 0.5905 4.5232 2.0980 40 1 1.8787 3.8227 3.1135 41 1 1.3219 -1.4728 1.6031 42 1 2.3868 -0.0903 2.0137 43 1 3.5066 -2.4263 1.2446 44 1 4.1617 -0.8921 0.5895 45 1 3.6319 -2.2884 -2.6200 46 1 4.7190 -1.4414 -1.4935 47 1 6.0226 -3.5314 -2.5871 48 1 8.5954 -7.2275 -2.2895 49 1 2.7162 -0.1227 -1.8114 50 1 1.2327 -1.1147 -1.8364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278356148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:44 Heat of formation + Delta-G solvation = -50.509607 kcal Electronic energy + Delta-G solvation = -29328.753893 eV Core-core repulsion = 25355.942992 eV Total energy + Delta-G solvation = -3972.810900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87997 -39.33301 -38.23556 -37.40295 -34.71227 -33.85334 -32.40315 -31.66661 -31.27983 -30.70472 -29.62854 -27.68145 -25.48552 -24.45842 -23.76790 -23.22474 -21.60581 -20.58590 -19.68545 -19.32041 -18.34823 -18.31933 -17.64218 -16.33853 -16.17684 -16.06204 -15.30576 -15.10693 -14.73940 -14.68163 -14.61845 -14.11902 -14.07697 -13.64353 -13.47272 -13.39598 -13.25244 -13.11813 -12.84543 -12.67267 -12.59061 -12.41272 -12.17785 -12.12938 -11.74657 -11.40631 -11.37025 -11.27758 -11.17134 -11.10941 -10.93699 -10.79618 -10.74477 -10.60293 -9.97398 -9.70851 -9.55604 -9.43520 -9.21379 -8.61996 -8.18419 -8.08997 -6.30497 -3.81823 1.85730 2.43684 2.89449 3.01481 3.05439 3.14110 3.74473 3.97987 4.10091 4.16375 4.22945 4.34352 4.44732 4.66115 4.78024 4.79104 4.82383 4.88043 4.91076 5.01333 5.12141 5.19138 5.20574 5.25751 5.38173 5.41515 5.42645 5.51405 5.52966 5.56505 5.64497 5.67251 5.75386 5.82324 5.84159 5.91146 5.92518 5.97346 6.17338 6.20428 6.21360 6.37355 6.44182 6.50408 7.03964 7.06094 7.30967 7.58904 8.04381 8.15078 8.61051 8.96183 9.43041 9.84565 10.82736 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002274 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.360306 B =12310.628293 C =13066.098849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 N -0.721 5.721 4 C 0.520 3.480 5 O -0.530 6.530 6 C -0.109 4.109 7 H 0.098 0.902 8 C -0.080 4.080 9 C -0.157 4.157 10 C -0.153 4.153 11 C -0.094 4.094 12 C -0.098 4.098 13 C -0.119 4.119 14 C 0.039 3.961 15 N -0.487 5.487 16 C 0.034 3.966 17 C 0.454 3.546 18 O -0.556 6.556 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.035 3.965 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.397 0.603 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.046 0.954 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.077 27.866 0.430 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.078 3.922 3 N -0.373 5.373 4 C 0.306 3.694 5 O -0.406 6.406 6 C -0.131 4.131 7 H 0.116 0.884 8 C -0.117 4.117 9 C -0.175 4.175 10 C -0.171 4.171 11 C -0.131 4.131 12 C -0.136 4.136 13 C -0.158 4.158 14 C -0.088 4.088 15 N -0.211 5.211 16 C -0.098 4.098 17 C 0.240 3.760 18 O -0.437 6.437 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.094 4.094 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.119 0.881 44 H 0.055 0.945 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.085 26.498 1.677 29.172 hybrid contribution 1.748 1.571 -1.892 3.017 sum -10.337 28.068 -0.216 29.912 Atomic orbital electron populations 1.22156 0.93131 1.03109 1.02862 1.21244 0.94665 0.80429 0.95863 1.46315 1.51317 1.12061 1.27626 1.20543 0.80536 0.86923 0.81395 1.90677 1.36020 1.77853 1.36094 1.21437 1.02111 0.91704 0.97819 0.88418 1.20415 1.02016 0.92979 0.96324 1.21984 1.01589 0.95772 0.98137 1.22109 1.00723 0.99693 0.94580 1.20518 1.01276 0.95906 0.95429 1.21410 1.00530 0.94604 0.97082 1.22916 0.98063 0.98385 0.96433 1.23333 0.95313 0.99693 0.90491 1.64525 1.20827 1.33715 1.02055 1.22113 0.92638 0.97114 0.97957 1.19580 0.82739 0.87681 0.86033 1.90558 1.62289 1.60424 1.30469 1.42205 1.28532 1.21350 1.31220 1.19423 1.11077 0.95610 1.17068 0.86278 1.25036 0.96832 0.96214 0.98162 1.69618 1.23360 1.18232 1.41010 0.86675 0.79826 0.80237 0.82648 1.19723 1.20189 1.19529 1.23219 0.98825 0.91681 0.95636 0.91095 0.90227 0.92908 0.76858 0.90553 0.90330 0.87625 0.87855 0.90627 0.90681 0.91100 0.90524 0.89771 0.90579 0.88148 0.94468 0.89225 0.93194 0.79815 0.91645 0.93572 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.16 37.16 0.30 -1.37 16 2 C 0.16 1.81 0.95 -130.22 -0.12 1.68 16 3 N -0.72 -6.45 5.06 -46.13 -0.23 -6.69 16 4 C 0.52 5.18 6.33 -10.99 -0.07 5.11 16 5 O -0.53 -7.09 12.82 5.56 0.07 -7.02 16 6 C -0.11 -0.81 2.57 -91.56 -0.24 -1.05 16 7 H 0.10 0.66 8.13 -51.93 -0.42 0.23 16 8 C -0.08 -0.48 5.29 -28.13 -0.15 -0.63 16 9 C -0.16 -0.94 9.80 -35.86 -0.35 -1.29 16 10 C -0.15 -0.93 9.80 -35.90 -0.35 -1.28 16 11 C -0.09 -0.58 6.12 -28.18 -0.17 -0.75 16 12 C -0.10 -0.77 4.69 -26.51 -0.12 -0.89 16 13 C -0.12 -1.59 5.87 -24.64 -0.14 -1.74 16 14 C 0.04 0.61 5.94 -1.90 -0.01 0.60 16 15 N -0.49 -7.62 4.91 -231.90 -1.14 -8.76 16 16 C 0.03 0.55 5.19 -4.98 -0.03 0.52 16 17 C 0.45 10.27 7.61 -10.99 -0.08 10.18 16 18 O -0.56 -14.89 14.64 5.55 0.08 -14.81 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 28 C 0.04 0.40 6.11 -2.75 -0.02 0.38 16 29 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.08 0.99 6.04 -51.93 -0.31 0.67 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.40 2.65 7.79 -40.82 -0.32 2.33 16 33 H 0.08 0.36 7.91 -51.93 -0.41 -0.05 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.11 0.53 8.06 -52.48 -0.42 0.10 16 36 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 40 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 41 H 0.08 1.18 7.85 -51.93 -0.41 0.78 16 42 H 0.08 1.05 6.86 -51.93 -0.36 0.69 16 43 H 0.10 1.88 7.10 -51.93 -0.37 1.51 16 44 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 45 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 46 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 47 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.05 0.43 7.09 -51.93 -0.37 0.07 16 50 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -33.78 389.47 -9.33 -43.10 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.18 Total: 11.11 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.80 Total: 1.78 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.65 Total: -54.56 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.15 Total: -21.83 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.78 -9.33 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278356148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.406 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds