Wall clock time and date at job start Tue Mar 31 2020 19:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 110.35454 * 2 1 4 4 C 1.34773 * 119.99963 * 57.85381 * 3 2 1 5 5 O 1.21283 * 120.00415 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99776 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.64420 * 300.00548 * 6 4 3 8 8 C 1.53025 * 109.64304 * 60.42670 * 6 4 3 9 9 C 1.50162 * 110.09844 * 168.90349 * 8 6 4 10 10 C 1.29445 * 124.14690 * 343.27998 * 9 8 6 11 11 C 1.50066 * 124.07503 * 0.24322 * 10 9 8 12 12 C 1.53027 * 110.14634 * 342.86791 * 11 10 9 13 13 C 1.55034 * 110.45199 * 122.31897 * 2 1 3 14 14 C 1.54930 * 102.99846 * 140.68940 * 13 2 1 15 15 N 1.48535 * 103.22755 * 322.65440 * 14 13 2 16 16 C 1.46893 * 111.00017 * 159.72165 * 15 14 13 17 17 C 1.50695 * 109.47445 * 72.60353 * 16 15 14 18 18 O 1.21294 * 120.00096 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00175 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99863 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00339 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99738 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47282 * 90.00106 * 24 22 20 26 26 H 1.48503 * 109.46700 * 210.00175 * 24 22 20 27 27 H 1.48502 * 109.47294 * 329.99542 * 24 22 20 28 28 C 1.47900 * 105.81903 * 39.20561 * 15 14 13 29 29 H 1.08992 * 109.47373 * 182.14554 * 1 2 3 30 30 H 1.08999 * 109.47063 * 302.14554 * 1 2 3 31 31 H 1.09005 * 109.46966 * 62.13864 * 1 2 3 32 32 H 0.96998 * 119.99635 * 237.86137 * 3 2 1 33 33 H 1.09004 * 109.35784 * 289.32894 * 8 6 4 34 34 H 1.08997 * 109.35682 * 48.90732 * 8 6 4 35 35 H 1.08004 * 117.88995 * 163.03216 * 9 8 6 36 36 H 1.07998 * 117.96079 * 180.21659 * 10 9 8 37 37 H 1.09000 * 109.35793 * 222.66020 * 11 10 9 38 38 H 1.09001 * 109.36238 * 103.07399 * 11 10 9 39 39 H 1.08998 * 109.64355 * 289.74761 * 12 11 10 40 40 H 1.09000 * 109.63780 * 169.12311 * 12 11 10 41 41 H 1.08998 * 110.63192 * 22.33144 * 13 2 1 42 42 H 1.09005 * 110.89526 * 259.17254 * 13 2 1 43 43 H 1.08995 * 110.66945 * 204.21634 * 14 13 2 44 44 H 1.09005 * 110.81003 * 81.15592 * 14 13 2 45 45 H 1.09007 * 109.47213 * 192.60538 * 16 15 14 46 46 H 1.09001 * 109.47242 * 312.60041 * 16 15 14 47 47 H 0.96995 * 119.99678 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00054 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.91739 * 94.02573 * 28 15 14 50 50 H 1.09002 * 109.91391 * 215.12207 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0396 1.3735 0.0000 4 6 1.6917 2.2213 0.9882 5 8 0.9572 1.8471 1.8778 6 6 2.2164 3.6340 0.9885 7 1 3.3056 3.6204 1.0271 8 6 1.7557 4.3541 -0.2807 9 6 2.0365 5.8251 -0.1702 10 6 2.2935 6.4342 0.9427 11 6 2.3520 5.7543 2.2792 12 6 1.6666 4.3880 2.2060 13 6 2.0717 -0.7766 1.2276 14 6 3.2879 -1.5412 0.6473 15 7 2.8301 -1.9262 -0.7123 16 6 3.9715 -2.2293 -1.5859 17 6 4.5784 -3.5476 -1.1804 18 8 4.1069 -4.1731 -0.2543 19 7 5.6453 -4.0318 -1.8467 20 6 6.1977 -5.2309 -1.4774 21 1 5.7778 -5.7878 -0.6527 22 6 7.2979 -5.7298 -2.1640 23 7 7.8272 -6.8794 -1.8104 24 14 8.0246 -4.7662 -3.5898 25 1 9.0723 -3.8447 -3.0816 26 1 8.6258 -5.7079 -4.5682 27 1 6.9534 -3.9803 -4.2532 28 6 2.0645 -0.7684 -1.2229 29 1 -0.3634 -1.0268 0.0385 30 1 -0.3633 0.5468 0.8701 31 1 -0.3633 0.4803 -0.9086 32 1 2.6272 1.6727 -0.7113 33 1 2.2858 3.9450 -1.1408 34 1 0.6846 4.2024 -0.4136 35 1 2.0271 6.4107 -1.0776 36 1 2.4776 7.4977 0.9070 37 1 1.8471 6.3725 3.0215 38 1 3.3936 5.6207 2.5714 39 1 0.5905 4.5232 2.0980 40 1 1.8787 3.8227 3.1135 41 1 1.3219 -1.4728 1.6031 42 1 2.3868 -0.0903 2.0137 43 1 3.5066 -2.4263 1.2446 44 1 4.1617 -0.8921 0.5895 45 1 3.6319 -2.2884 -2.6200 46 1 4.7190 -1.4414 -1.4935 47 1 6.0226 -3.5314 -2.5871 48 1 8.5954 -7.2275 -2.2895 49 1 2.7162 -0.1227 -1.8114 50 1 1.2327 -1.1147 -1.8364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278356148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:42 Heat of formation + Delta-G solvation = -76.114900 kcal Electronic energy + Delta-G solvation = -29329.864222 eV Core-core repulsion = 25355.942992 eV Total energy + Delta-G solvation = -3973.921229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73139 -40.53726 -39.53098 -38.30336 -36.09650 -35.49491 -33.75498 -33.18599 -31.85444 -31.45843 -30.61460 -29.00220 -26.88376 -25.47715 -24.85973 -23.84998 -22.73109 -21.42194 -21.25673 -20.55512 -20.15187 -18.82657 -18.39862 -17.80532 -17.29095 -16.79349 -16.64441 -16.36168 -16.11901 -15.78347 -15.61446 -15.19565 -14.88538 -14.75409 -14.59728 -14.42767 -14.29316 -14.15863 -14.07065 -13.92503 -13.51338 -13.39116 -13.13635 -13.02926 -12.96708 -12.93185 -12.42968 -12.39116 -12.35898 -12.00785 -11.98464 -11.96218 -11.79948 -11.67522 -11.47592 -11.28151 -10.51626 -10.39337 -10.22975 -10.06133 -9.85495 -9.33200 -8.39718 -6.00691 1.30711 1.36814 1.43996 1.45880 1.67369 1.98772 2.11676 2.24544 2.68921 3.16138 3.22796 3.43781 3.60752 3.67514 3.74973 3.88561 3.91949 4.18712 4.19770 4.25333 4.29523 4.32054 4.39615 4.41934 4.47369 4.50233 4.57214 4.62650 4.75214 4.78050 4.81150 4.87177 4.94448 4.94705 5.04502 5.06980 5.09557 5.10930 5.28194 5.32245 5.35418 5.53274 5.56507 5.79155 5.85257 5.93887 6.04504 6.08327 6.60324 6.62103 6.90687 7.31310 7.42009 8.00609 8.78158 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002274 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.360306 B =12310.628293 C =13066.098849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.172 3.828 3 N -0.708 5.708 4 C 0.518 3.482 5 O -0.569 6.569 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.077 4.077 9 C -0.160 4.160 10 C -0.162 4.162 11 C -0.092 4.092 12 C -0.099 4.099 13 C -0.113 4.113 14 C 0.044 3.956 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.450 3.550 18 O -0.609 6.609 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.052 0.948 22 C -0.019 4.019 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.413 0.587 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.390 0.610 48 H 0.278 0.722 49 H 0.082 0.918 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 31.970 -3.372 33.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.085 3.915 3 N -0.361 5.361 4 C 0.306 3.694 5 O -0.448 6.448 6 C -0.124 4.124 7 H 0.129 0.871 8 C -0.114 4.114 9 C -0.178 4.178 10 C -0.180 4.180 11 C -0.129 4.129 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.084 4.084 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.070 0.930 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.182 1.182 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.087 4.087 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.251 0.749 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.144 0.856 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.576 30.645 -2.152 32.829 hybrid contribution 1.496 0.213 -0.535 1.603 sum -10.080 30.857 -2.687 32.573 Atomic orbital electron populations 1.22085 0.92944 1.02654 1.03041 1.21043 0.94729 0.81226 0.94466 1.46147 1.51199 1.10912 1.27889 1.21022 0.79783 0.87846 0.80766 1.90675 1.37840 1.78672 1.37640 1.21425 1.02607 0.89899 0.98443 0.87121 1.20433 1.01876 0.93060 0.96047 1.22130 1.01252 0.95764 0.98649 1.22231 1.01096 1.00347 0.94348 1.20500 1.01406 0.94887 0.96079 1.21369 0.99964 0.95591 0.96745 1.22796 0.96951 0.98046 0.97456 1.23134 0.96560 0.98032 0.90642 1.64395 1.21036 1.36629 1.01942 1.22052 0.93554 0.93489 0.99424 1.20946 0.81509 0.89333 0.84401 1.90549 1.63533 1.62532 1.32629 1.42016 1.29106 1.20148 1.32228 1.18976 1.12451 0.97620 1.16535 0.92981 1.26163 0.96503 0.97284 1.01740 1.69813 1.24175 1.20714 1.43070 0.85337 0.79813 0.78759 0.77412 1.18158 1.20190 1.15088 1.23253 0.99170 0.90646 0.95630 0.91747 0.92077 0.90801 0.74921 0.88363 0.90976 0.86264 0.86774 0.90156 0.90128 0.92452 0.92247 0.91469 0.91294 0.92795 0.93284 0.85645 0.89670 0.77457 0.91214 0.90000 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.16 71.98 0.59 -2.41 16 2 C 0.17 3.42 0.95 4.64 0.00 3.42 16 3 N -0.71 -10.54 5.06 -418.26 -2.12 -12.65 16 4 C 0.52 9.52 6.33 87.66 0.56 10.07 16 5 O -0.57 -15.24 12.82 -3.04 -0.04 -15.28 16 6 C -0.10 -1.31 2.57 -11.40 -0.03 -1.34 16 7 H 0.11 1.16 8.13 -2.39 -0.02 1.14 16 8 C -0.08 -0.69 5.29 29.69 0.16 -0.54 16 9 C -0.16 -1.44 9.80 27.06 0.27 -1.18 16 10 C -0.16 -1.58 9.80 27.03 0.27 -1.32 16 11 C -0.09 -0.99 6.12 29.66 0.18 -0.81 16 12 C -0.10 -1.47 4.69 30.73 0.14 -1.33 16 13 C -0.11 -3.05 5.87 31.95 0.19 -2.86 16 14 C 0.04 1.36 5.94 86.65 0.51 1.88 16 15 N -0.52 -15.04 4.91 -887.59 -4.35 -19.39 16 16 C 0.05 1.34 5.19 85.56 0.44 1.78 16 17 C 0.45 20.21 7.61 87.65 0.67 20.88 16 18 O -0.61 -34.16 14.64 -3.07 -0.04 -34.21 16 19 N -0.59 -27.64 5.09 -306.98 -1.56 -29.21 16 20 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 21 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 22 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 23 N -0.94 -56.78 13.96 21.66 0.30 -56.47 16 24 Si 0.97 38.21 27.74 68.60 1.90 40.12 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 28 C 0.04 0.76 6.11 86.45 0.53 1.29 16 29 H 0.06 1.37 8.11 -2.39 -0.02 1.35 16 30 H 0.06 1.49 6.04 -2.39 -0.01 1.48 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.41 3.53 7.79 -92.71 -0.72 2.81 16 33 H 0.10 0.47 7.91 -2.38 -0.02 0.45 16 34 H 0.07 0.77 8.10 -2.39 -0.02 0.76 16 35 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.11 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 40 H 0.06 1.07 7.90 -2.39 -0.02 1.05 16 41 H 0.07 2.00 7.85 -2.39 -0.02 1.98 16 42 H 0.07 1.94 6.86 -2.38 -0.02 1.92 16 43 H 0.05 2.16 7.10 -2.39 -0.02 2.14 16 44 H 0.05 1.37 7.81 -2.38 -0.02 1.35 16 45 H 0.13 2.83 8.08 -2.38 -0.02 2.82 16 46 H 0.09 1.95 7.83 -2.39 -0.02 1.93 16 47 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.08 1.00 7.09 -2.39 -0.02 0.99 16 50 H 0.10 1.77 7.68 -2.39 -0.02 1.75 16 Total: -1.00 -82.19 389.47 -0.48 -82.68 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.36 Total: 35.78 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.79 Total: 8.65 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.73 Total: -117.73 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.08 Total: -49.49 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.12 kcal Total: -82.19 -0.48 -82.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278356148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.564 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds