Wall clock time and date at job start Tue Mar 31 2020 19:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47159 * 24.56788 * 3 2 1 5 5 C 1.52995 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47383 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00453 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99529 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52991 * 110.28561 * 299.32696 * 10 9 7 12 12 C 1.54262 * 110.32287 * 61.45371 * 10 9 7 13 13 C 1.54377 * 105.05927 * 118.89625 * 12 10 9 14 14 N 1.48552 * 104.59445 * 336.14521 * 13 12 10 15 15 C 1.46902 * 110.99920 * 159.04050 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87237 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46636 * 60.00069 * 23 21 19 25 25 H 1.48498 * 109.47594 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47124 * 300.00305 * 23 21 19 27 27 C 1.48563 * 104.22423 * 39.48587 * 14 13 12 28 28 H 4.44644 * 5.63304 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47256 * 264.56436 * 3 2 1 30 30 H 1.08999 * 109.46899 * 144.56633 * 3 2 1 31 31 H 1.09006 * 109.47686 * 59.99593 * 4 3 2 32 32 H 1.08999 * 109.47088 * 299.99729 * 4 3 2 33 33 H 1.08999 * 109.47128 * 60.00249 * 5 4 3 34 34 H 1.09004 * 109.47335 * 299.99558 * 5 4 3 35 35 H 1.08999 * 109.46752 * 60.00060 * 6 5 4 36 36 H 1.09004 * 109.46556 * 300.00075 * 6 5 4 37 37 H 0.96995 * 120.00196 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.47185 * 180.67440 * 11 10 9 39 39 H 1.09005 * 109.47366 * 300.67027 * 11 10 9 40 40 H 1.09002 * 109.47760 * 60.67469 * 11 10 9 41 41 H 1.09002 * 110.32250 * 359.97438 * 12 10 9 42 42 H 1.08998 * 110.40670 * 237.83735 * 12 10 9 43 43 H 1.09000 * 110.40771 * 217.36703 * 13 12 10 44 44 H 1.08995 * 110.51009 * 94.98023 * 13 12 10 45 45 H 1.09004 * 109.47131 * 309.87481 * 15 14 13 46 46 H 1.08994 * 109.47471 * 189.87230 * 15 14 13 47 47 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 48 48 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 49 49 H 1.08995 * 110.40809 * 79.29078 * 27 14 13 50 50 H 1.08997 * 110.41077 * 201.73969 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3110 -0.5997 5 6 4.6866 -1.3100 -0.6003 6 6 5.1972 -2.6220 -1.1995 7 6 6.7042 -2.6213 -1.1995 8 8 7.3101 -1.6654 -0.7636 9 7 7.3785 -3.6825 -1.6848 10 6 8.8436 -3.6816 -1.6853 11 6 9.3730 -2.5221 -2.5313 12 6 9.3798 -3.5806 -0.2424 13 6 10.1955 -4.8734 -0.0262 14 7 9.6299 -5.8404 -1.0017 15 6 10.5806 -6.9254 -1.2791 16 6 10.7092 -7.8041 -0.0615 17 8 10.0713 -7.5517 0.9387 18 7 11.5285 -8.8740 -0.0861 19 6 11.6413 -9.6767 1.0196 20 1 11.0732 -9.4519 1.9102 21 6 12.4863 -10.7793 0.9944 22 7 13.1779 -11.0526 -0.0891 23 14 12.6405 -11.8726 2.5012 24 1 11.3119 -12.4463 2.8344 25 1 13.5983 -12.9718 2.2194 26 1 13.1341 -11.0684 3.6478 27 6 9.3804 -5.0269 -2.2195 28 1 -1.0498 -0.0004 0.0000 29 1 3.0093 0.0982 1.0230 30 1 3.0089 0.8382 -0.5958 31 1 2.7933 -1.4086 -1.6228 32 1 2.7937 -2.1485 -0.0039 33 1 5.0502 -1.2124 0.4226 34 1 5.0492 -0.4726 -1.1964 35 1 4.8336 -2.7201 -2.2224 36 1 4.8346 -3.4592 -0.6030 37 1 6.8939 -4.4469 -2.0337 38 1 10.4629 -2.5411 -2.5324 39 1 9.0070 -2.6212 -3.5533 40 1 9.0265 -1.5778 -2.1113 41 1 8.5530 -3.5313 0.4662 42 1 10.0213 -2.7059 -0.1357 43 1 10.0644 -5.2397 0.9920 44 1 11.2512 -4.6979 -0.2332 45 1 11.5541 -6.5013 -1.5256 46 1 10.2197 -7.5189 -2.1190 47 1 12.0386 -9.0760 -0.8861 48 1 13.7681 -11.8221 -0.1066 49 1 10.3080 -4.8740 -2.7710 50 1 8.6356 -5.5089 -2.8526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278381125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:43 Heat of formation + Delta-G solvation = -29.118861 kcal Electronic energy + Delta-G solvation = -28204.227322 eV Core-core repulsion = 24232.343994 eV Total energy + Delta-G solvation = -3971.883328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.49664 -38.84996 -37.64903 -36.40015 -34.59276 -33.78309 -33.48587 -31.76063 -31.18824 -30.03550 -29.38784 -27.61314 -25.70652 -25.11164 -23.84217 -21.93829 -21.40387 -20.63167 -19.58901 -19.03847 -18.38684 -17.84648 -17.08828 -16.44638 -16.32833 -15.95452 -15.30914 -15.03845 -14.72941 -14.55608 -14.45024 -14.28995 -13.89585 -13.78309 -13.53443 -13.24412 -13.14220 -12.97045 -12.50922 -12.35791 -12.23728 -11.93609 -11.91269 -11.88216 -11.56743 -11.51373 -11.45477 -11.08888 -11.00527 -10.94919 -10.91386 -10.62254 -10.52598 -10.43821 -10.42335 -10.21127 -9.68571 -9.48148 -9.08735 -8.51337 -8.04026 -7.94354 -6.41314 -3.82125 2.47045 2.51264 2.60499 3.09405 3.20223 3.25839 3.30235 3.90577 4.00852 4.01738 4.25740 4.37669 4.55118 4.61347 4.63973 4.79933 4.96206 5.00233 5.02197 5.11334 5.18676 5.25157 5.36630 5.37131 5.38423 5.42470 5.47206 5.52041 5.61408 5.65042 5.68455 5.71072 5.76059 5.80419 5.83916 5.91981 6.02040 6.04442 6.14407 6.25109 6.29549 6.47542 6.57484 7.09158 7.17457 7.28653 7.49461 7.55283 8.06341 8.20811 8.62351 9.18617 9.54836 10.06979 10.76412 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.001809 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.986726 B =15472.235320 C =16570.717042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.142 4.142 7 C 0.514 3.486 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.173 3.827 11 C -0.156 4.156 12 C -0.117 4.117 13 C 0.036 3.964 14 N -0.483 5.483 15 C 0.034 3.966 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.028 3.972 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.057 0.943 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.456 18.800 -8.269 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.182 4.182 7 C 0.300 3.700 8 O -0.417 6.417 9 N -0.366 5.366 10 C 0.087 3.913 11 C -0.215 4.215 12 C -0.156 4.156 13 C -0.092 4.092 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.101 4.101 28 H 0.232 0.768 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.769 19.213 -7.113 25.853 hybrid contribution 0.809 -0.977 -0.373 1.322 sum -14.960 18.235 -7.486 24.746 Atomic orbital electron populations 1.24917 0.96016 1.01018 1.01426 1.23241 0.94683 1.00320 1.00170 1.18772 0.84476 0.99169 1.02749 1.21567 0.95446 0.96760 1.01490 1.21332 0.93771 0.96534 1.02488 1.21690 0.92204 1.00781 1.03555 1.20632 0.90051 0.82320 0.76966 1.90667 1.70355 1.34585 1.46076 1.46161 1.06515 1.20044 1.63874 1.20985 0.79636 0.94706 0.96008 1.22187 1.00910 0.99254 0.99122 1.22663 1.00225 0.97384 0.95358 1.23212 0.95703 0.90705 0.99587 1.65173 1.41213 1.07771 1.06481 1.22070 0.94728 0.94320 0.98680 1.19677 0.84171 0.83842 0.89293 1.90509 1.48133 1.73192 1.34257 1.41847 1.39050 1.23585 1.15699 1.19645 1.24054 1.05305 0.93852 0.88003 1.25243 0.96294 0.97991 0.98358 1.69602 1.27933 1.29172 1.27700 0.85924 0.78157 0.79135 0.81034 1.19914 1.20989 1.19945 1.23432 1.00540 0.92284 0.93859 0.76757 0.89360 0.89460 0.91537 0.91380 0.90828 0.90992 0.89065 0.88757 0.76379 0.91814 0.92703 0.90281 0.90646 0.90870 0.88200 0.94332 0.93173 0.89296 0.77534 0.91855 0.92492 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.18 -1.53 13.34 -37.12 -0.50 -2.02 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.12 -0.72 5.17 -26.74 -0.14 -0.86 16 5 C -0.10 -0.76 4.50 -26.73 -0.12 -0.88 16 6 C -0.14 -1.03 5.70 -27.88 -0.16 -1.19 16 7 C 0.51 5.47 6.99 -10.99 -0.08 5.40 16 8 O -0.54 -7.45 13.27 5.56 0.07 -7.38 16 9 N -0.71 -7.26 5.10 -46.33 -0.24 -7.50 16 10 C 0.17 2.01 1.01 -130.44 -0.13 1.87 16 11 C -0.16 -1.64 8.17 37.15 0.30 -1.34 16 12 C -0.12 -1.63 5.48 -25.35 -0.14 -1.77 16 13 C 0.04 0.58 5.80 -2.19 -0.01 0.57 16 14 N -0.48 -7.79 5.06 -231.42 -1.17 -8.96 16 15 C 0.03 0.59 5.30 -4.97 -0.03 0.56 16 16 C 0.44 10.42 7.58 -10.98 -0.08 10.34 16 17 O -0.58 -15.52 14.42 5.55 0.08 -15.44 16 18 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 23 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.03 0.33 5.69 -2.18 -0.01 0.32 16 28 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 3.33 8.26 -40.82 -0.34 2.99 16 38 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.96 6.31 -51.93 -0.33 0.63 16 41 H 0.07 1.16 7.31 -51.93 -0.38 0.78 16 42 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 43 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 44 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 45 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 46 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 50 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -33.36 410.21 -8.68 -42.04 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.32 Total: 11.31 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.93 Total: 1.73 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.74 Total: -54.47 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.15 Total: -22.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.36 -8.68 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278381125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.922 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds