Wall clock time and date at job start Tue Mar 31 2020 19:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47159 * 24.56788 * 3 2 1 5 5 C 1.52995 * 109.47189 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47383 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00453 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99529 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52991 * 110.28561 * 299.32696 * 10 9 7 12 12 C 1.54262 * 110.32287 * 61.45371 * 10 9 7 13 13 C 1.54377 * 105.05927 * 118.89625 * 12 10 9 14 14 N 1.48552 * 104.59445 * 336.14521 * 13 12 10 15 15 C 1.46902 * 110.99920 * 159.04050 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87237 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46636 * 60.00069 * 23 21 19 25 25 H 1.48498 * 109.47594 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47124 * 300.00305 * 23 21 19 27 27 C 1.48563 * 104.22423 * 39.48587 * 14 13 12 28 28 H 4.44644 * 5.63304 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47256 * 264.56436 * 3 2 1 30 30 H 1.08999 * 109.46899 * 144.56633 * 3 2 1 31 31 H 1.09006 * 109.47686 * 59.99593 * 4 3 2 32 32 H 1.08999 * 109.47088 * 299.99729 * 4 3 2 33 33 H 1.08999 * 109.47128 * 60.00249 * 5 4 3 34 34 H 1.09004 * 109.47335 * 299.99558 * 5 4 3 35 35 H 1.08999 * 109.46752 * 60.00060 * 6 5 4 36 36 H 1.09004 * 109.46556 * 300.00075 * 6 5 4 37 37 H 0.96995 * 120.00196 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.47185 * 180.67440 * 11 10 9 39 39 H 1.09005 * 109.47366 * 300.67027 * 11 10 9 40 40 H 1.09002 * 109.47760 * 60.67469 * 11 10 9 41 41 H 1.09002 * 110.32250 * 359.97438 * 12 10 9 42 42 H 1.08998 * 110.40670 * 237.83735 * 12 10 9 43 43 H 1.09000 * 110.40771 * 217.36703 * 13 12 10 44 44 H 1.08995 * 110.51009 * 94.98023 * 13 12 10 45 45 H 1.09004 * 109.47131 * 309.87481 * 15 14 13 46 46 H 1.08994 * 109.47471 * 189.87230 * 15 14 13 47 47 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 48 48 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 49 49 H 1.08995 * 110.40809 * 79.29078 * 27 14 13 50 50 H 1.08997 * 110.41077 * 201.73969 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3110 -0.5997 5 6 4.6866 -1.3100 -0.6003 6 6 5.1972 -2.6220 -1.1995 7 6 6.7042 -2.6213 -1.1995 8 8 7.3101 -1.6654 -0.7636 9 7 7.3785 -3.6825 -1.6848 10 6 8.8436 -3.6816 -1.6853 11 6 9.3730 -2.5221 -2.5313 12 6 9.3798 -3.5806 -0.2424 13 6 10.1955 -4.8734 -0.0262 14 7 9.6299 -5.8404 -1.0017 15 6 10.5806 -6.9254 -1.2791 16 6 10.7092 -7.8041 -0.0615 17 8 10.0713 -7.5517 0.9387 18 7 11.5285 -8.8740 -0.0861 19 6 11.6413 -9.6767 1.0196 20 1 11.0732 -9.4519 1.9102 21 6 12.4863 -10.7793 0.9944 22 7 13.1779 -11.0526 -0.0891 23 14 12.6405 -11.8726 2.5012 24 1 11.3119 -12.4463 2.8344 25 1 13.5983 -12.9718 2.2194 26 1 13.1341 -11.0684 3.6478 27 6 9.3804 -5.0269 -2.2195 28 1 -1.0498 -0.0004 0.0000 29 1 3.0093 0.0982 1.0230 30 1 3.0089 0.8382 -0.5958 31 1 2.7933 -1.4086 -1.6228 32 1 2.7937 -2.1485 -0.0039 33 1 5.0502 -1.2124 0.4226 34 1 5.0492 -0.4726 -1.1964 35 1 4.8336 -2.7201 -2.2224 36 1 4.8346 -3.4592 -0.6030 37 1 6.8939 -4.4469 -2.0337 38 1 10.4629 -2.5411 -2.5324 39 1 9.0070 -2.6212 -3.5533 40 1 9.0265 -1.5778 -2.1113 41 1 8.5530 -3.5313 0.4662 42 1 10.0213 -2.7059 -0.1357 43 1 10.0644 -5.2397 0.9920 44 1 11.2512 -4.6979 -0.2332 45 1 11.5541 -6.5013 -1.5256 46 1 10.2197 -7.5189 -2.1190 47 1 12.0386 -9.0760 -0.8861 48 1 13.7681 -11.8221 -0.1066 49 1 10.3080 -4.8740 -2.7710 50 1 8.6356 -5.5089 -2.8526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278381125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:41 Heat of formation + Delta-G solvation = -52.629589 kcal Electronic energy + Delta-G solvation = -28205.246824 eV Core-core repulsion = 24232.343994 eV Total energy + Delta-G solvation = -3972.902830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47012 -40.26652 -39.08359 -37.00940 -36.05147 -35.40574 -34.11065 -33.29735 -32.64895 -30.91118 -30.25334 -28.94967 -26.93542 -26.14256 -25.24095 -22.78094 -22.48270 -21.40041 -21.02150 -20.36123 -19.82558 -18.90358 -17.97297 -17.67128 -17.40457 -16.94612 -16.69665 -16.35258 -16.00633 -15.74779 -15.53309 -15.47647 -15.09509 -15.01578 -14.54827 -14.25762 -14.17005 -13.86073 -13.74879 -13.50810 -13.38124 -13.20052 -13.02235 -12.93138 -12.74775 -12.55700 -12.50946 -12.42422 -12.19222 -12.14246 -12.11960 -11.93476 -11.80261 -11.56197 -11.46382 -11.10066 -10.96394 -10.56801 -10.30587 -10.00524 -9.96395 -9.37773 -8.45578 -5.94009 1.39714 1.41572 1.52171 1.78750 1.89231 1.93731 2.07600 2.28348 2.31642 2.81091 3.21150 3.34143 3.46283 3.52451 3.77051 3.90587 4.02883 4.03906 4.08186 4.20155 4.29390 4.41737 4.44113 4.47491 4.47924 4.54082 4.64134 4.65855 4.68994 4.76900 4.83007 4.83835 4.88581 4.93123 4.94803 5.12432 5.12741 5.15970 5.22912 5.31112 5.37054 5.41447 5.47421 5.67117 5.83699 5.90333 6.08280 6.62330 6.71342 6.73101 7.14524 7.41231 7.58273 8.14843 8.71549 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.001809 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.986726 B =15472.235320 C =16570.717042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.018 4.018 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.136 4.136 7 C 0.508 3.492 8 O -0.575 6.575 9 N -0.710 5.710 10 C 0.176 3.824 11 C -0.148 4.148 12 C -0.109 4.109 13 C 0.039 3.961 14 N -0.502 5.502 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.618 6.618 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.033 3.967 28 H 0.241 0.759 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.076 0.924 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 18.694 -10.291 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.054 4.054 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.176 4.176 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.362 5.362 10 C 0.089 3.911 11 C -0.207 4.207 12 C -0.148 4.148 13 C -0.089 4.089 14 N -0.226 5.226 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.504 6.504 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.095 4.095 28 H 0.257 0.743 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.249 0.751 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.482 19.097 -9.176 26.843 hybrid contribution 0.984 -0.889 0.278 1.355 sum -15.498 18.208 -8.899 25.513 Atomic orbital electron populations 1.25692 0.96983 1.00180 1.00585 1.23759 0.95599 1.01187 1.01034 1.18829 0.83970 0.99636 1.02988 1.21464 0.94375 0.96528 1.01887 1.21251 0.94466 0.96542 1.01332 1.21717 0.89573 1.00916 1.05356 1.21235 0.91393 0.81712 0.76012 1.90656 1.71336 1.35951 1.47570 1.46136 1.06025 1.20423 1.63637 1.20916 0.80545 0.95299 0.94295 1.22104 1.01375 0.97589 0.99589 1.22555 0.99251 0.96161 0.96871 1.23045 0.96496 0.91741 0.97657 1.65096 1.40769 1.08187 1.08578 1.21945 0.96529 0.94088 0.95926 1.20793 0.82336 0.83424 0.90626 1.90489 1.49332 1.74033 1.36504 1.41909 1.39861 1.24151 1.15272 1.19599 1.25329 1.07083 0.94318 0.90534 1.25982 0.95416 0.98575 1.01106 1.69658 1.27909 1.29590 1.28887 0.85024 0.78289 0.77570 0.77653 1.19787 1.19406 1.19923 1.23533 1.02139 0.91527 0.92290 0.74297 0.89360 0.88804 0.90717 0.91497 0.92589 0.91569 0.86378 0.87755 0.75053 0.91026 0.90852 0.92052 0.92832 0.90556 0.92579 0.93802 0.91046 0.86571 0.76992 0.91327 0.90554 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.01 19.25 74.32 1.43 -1.58 16 2 C -0.22 -3.44 13.34 31.12 0.42 -3.02 16 3 C -0.02 -0.23 5.70 28.79 0.16 -0.06 16 4 C -0.11 -1.20 5.17 30.59 0.16 -1.05 16 5 C -0.10 -1.37 4.50 30.60 0.14 -1.23 16 6 C -0.14 -1.75 5.70 29.85 0.17 -1.58 16 7 C 0.51 10.31 6.99 87.65 0.61 10.93 16 8 O -0.58 -15.88 13.27 -3.02 -0.04 -15.93 16 9 N -0.71 -13.14 5.10 -418.88 -2.13 -15.27 16 10 C 0.18 3.76 1.01 4.49 0.00 3.77 16 11 C -0.15 -2.77 8.17 71.98 0.59 -2.18 16 12 C -0.11 -3.05 5.48 31.49 0.17 -2.87 16 13 C 0.04 1.28 5.80 86.45 0.50 1.78 16 14 N -0.50 -15.54 5.06 -886.09 -4.49 -20.03 16 15 C 0.05 1.55 5.30 85.56 0.45 2.00 16 16 C 0.44 20.86 7.58 87.66 0.66 21.53 16 17 O -0.62 -34.37 14.42 -3.07 -0.04 -34.41 16 18 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 19 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 22 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C 0.03 0.68 5.69 86.45 0.49 1.17 16 28 H 0.24 1.59 7.80 -4.43 -0.03 1.55 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 5.75 8.26 -92.71 -0.77 4.98 16 38 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.41 6.31 -2.39 -0.02 1.40 16 41 H 0.05 1.71 7.31 -2.39 -0.02 1.70 16 42 H 0.08 2.04 7.71 -2.39 -0.02 2.03 16 43 H 0.06 2.33 6.91 -2.39 -0.02 2.31 16 44 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16 45 H 0.07 2.10 7.88 -2.38 -0.02 2.08 16 46 H 0.12 3.26 8.13 -2.39 -0.02 3.24 16 47 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.08 1.35 7.71 -2.39 -0.02 1.33 16 50 H 0.11 1.77 7.75 -2.39 -0.02 1.75 16 Total: -1.00 -74.57 410.21 0.67 -73.90 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.56 Total: 37.34 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 7.25 Total: 9.31 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -7.96 Total: -115.28 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.08 Total: -50.34 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.57 0.67 -73.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278381125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.273 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds