Wall clock time and date at job start Tue Mar 31 2020 19:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46938 * 245.77672 * 3 2 1 5 5 C 1.53007 * 109.46695 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46742 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47422 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99605 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00574 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00210 * 180.02562 * 9 7 6 11 11 C 1.53004 * 110.35512 * 57.85960 * 10 9 7 12 12 C 1.54594 * 110.31020 * 295.71635 * 10 9 7 13 13 C 1.54933 * 102.92252 * 263.04295 * 12 10 9 14 14 N 1.48534 * 103.22824 * 322.58255 * 13 12 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 12 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46756 * 300.00019 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 12 28 28 H 4.44650 * 5.63393 * 180.02562 * 4 1 2 29 29 H 1.09006 * 109.46873 * 125.78308 * 3 2 1 30 30 H 1.09001 * 109.47427 * 5.78057 * 3 2 1 31 31 H 1.08993 * 109.46770 * 60.00848 * 4 3 2 32 32 H 1.08989 * 109.47229 * 300.00032 * 4 3 2 33 33 H 1.08993 * 109.46937 * 60.00806 * 5 4 3 34 34 H 1.08997 * 109.46959 * 300.00103 * 5 4 3 35 35 H 1.09004 * 109.47465 * 60.00081 * 6 5 4 36 36 H 1.09001 * 109.47148 * 300.00160 * 6 5 4 37 37 H 0.97005 * 119.99376 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47015 * 182.14527 * 11 10 9 39 39 H 1.09001 * 109.46533 * 302.14189 * 11 10 9 40 40 H 1.08999 * 109.46789 * 62.13778 * 11 10 9 41 41 H 1.09002 * 110.71950 * 21.39927 * 12 10 9 42 42 H 1.09000 * 110.72900 * 144.50567 * 12 10 9 43 43 H 1.08997 * 110.67236 * 204.14971 * 13 12 10 44 44 H 1.09001 * 110.67169 * 81.02116 * 13 12 10 45 45 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 46 46 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 47 47 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 50 50 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5928 1.3156 5 6 4.6858 0.5940 1.3152 6 6 5.1955 1.1855 2.6310 7 6 6.7024 1.1874 2.6306 8 8 7.3091 0.7583 1.6719 9 7 7.3761 1.6668 3.6949 10 6 8.8411 1.6691 3.6942 11 6 9.3714 2.4651 2.5000 12 6 9.3799 0.2206 3.6554 13 6 9.6729 -0.0801 5.1467 14 7 10.1937 1.2134 5.6583 15 6 10.0802 1.2851 7.1212 16 6 10.7200 0.0664 7.7350 17 8 11.2217 -0.7784 7.0237 18 7 10.7357 -0.0842 9.0742 19 6 11.3182 -1.1925 9.6326 20 1 11.7642 -1.9451 8.9992 21 6 11.3339 -1.3481 11.0132 22 7 10.7909 -0.4326 11.7838 23 14 12.1283 -2.8579 11.7741 24 1 13.5620 -2.9091 11.3909 25 1 12.0139 -2.7854 13.2529 26 1 11.4409 -4.0793 11.2832 27 6 9.3752 2.2618 5.0113 28 1 -1.0501 -0.0002 -0.0001 29 1 3.0090 0.6018 -0.8337 30 1 3.0098 -1.0216 -0.1035 31 1 2.7927 -0.0083 2.1492 32 1 2.7919 1.6149 1.4190 33 1 5.0484 1.1953 0.4816 34 1 5.0499 -0.4281 1.2115 35 1 4.8328 0.5839 3.4645 36 1 4.8313 2.2076 2.7351 37 1 6.8909 2.0109 4.4611 38 1 10.4607 2.4256 2.4919 39 1 8.9854 2.0345 1.5761 40 1 9.0459 3.5022 2.5813 41 1 8.6244 -0.4616 3.2655 42 1 10.2920 0.1641 3.0612 43 1 10.4263 -0.8623 5.2407 44 1 8.7586 -0.3606 5.6696 45 1 9.0278 1.3235 7.4026 46 1 10.5856 2.1812 7.4814 47 1 10.3348 0.5916 9.6430 48 1 10.8022 -0.5410 12.7477 49 1 8.5431 2.5361 5.6595 50 1 9.9897 3.1382 4.8052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278381126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:46 Heat of formation + Delta-G solvation = -48.011649 kcal Electronic energy + Delta-G solvation = -28337.342837 eV Core-core repulsion = 24364.640256 eV Total energy + Delta-G solvation = -3972.702581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57112 -40.36849 -39.04362 -37.01987 -36.11044 -35.35864 -34.13245 -33.34144 -32.64799 -30.92927 -30.32431 -28.88077 -26.93197 -26.18084 -25.23115 -22.98593 -22.35118 -21.32095 -21.11380 -20.45815 -19.84590 -18.91316 -18.11609 -17.70112 -17.20432 -16.99117 -16.71121 -16.30346 -16.05344 -15.85334 -15.66715 -15.39528 -15.12833 -14.77920 -14.70106 -14.36303 -14.13735 -13.96786 -13.75962 -13.60510 -13.43714 -13.17809 -13.00308 -12.92050 -12.63201 -12.56121 -12.43968 -12.39572 -12.26657 -12.15031 -12.11791 -11.95086 -11.86587 -11.57448 -11.46420 -11.10604 -10.97078 -10.57662 -10.22261 -10.03070 -9.95198 -9.34459 -8.46828 -5.95216 1.39113 1.41541 1.51952 1.74020 1.88309 1.93124 2.04328 2.19133 2.29786 2.89577 3.20088 3.27469 3.49560 3.51674 3.76291 3.86564 3.95813 4.02066 4.06953 4.25008 4.29411 4.34477 4.42622 4.45660 4.48547 4.52669 4.62420 4.65516 4.76583 4.81633 4.83447 4.89708 4.91499 4.93350 4.99465 5.10776 5.12486 5.22150 5.25940 5.34223 5.36009 5.41148 5.46278 5.60256 5.83392 5.94902 6.10815 6.60776 6.64583 6.72443 7.13049 7.36117 7.55596 8.12092 8.70151 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.001905 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.565860 B =14696.748407 C =15903.705167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.018 4.018 4 C -0.105 4.105 5 C -0.099 4.099 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.572 6.572 9 N -0.715 5.715 10 C 0.170 3.830 11 C -0.147 4.147 12 C -0.115 4.115 13 C 0.045 3.955 14 N -0.509 5.509 15 C 0.048 3.952 16 C 0.437 3.563 17 O -0.615 6.615 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.037 3.963 28 H 0.240 0.760 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.073 0.927 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 9.858 -17.368 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.055 4.055 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.175 4.175 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.368 5.368 10 C 0.083 3.917 11 C -0.205 4.205 12 C -0.154 4.154 13 C -0.082 4.082 14 N -0.234 5.234 15 C -0.083 4.083 16 C 0.224 3.776 17 O -0.502 6.502 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.090 4.090 28 H 0.257 0.743 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.249 0.751 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.464 9.093 -18.394 26.307 hybrid contribution -0.801 -0.629 1.482 1.798 sum -17.265 8.464 -16.911 25.607 Atomic orbital electron populations 1.25700 0.96990 1.00583 1.00169 1.23756 0.95597 1.01038 1.01197 1.18836 0.83969 1.03022 0.99644 1.21462 0.94336 1.01925 0.96491 1.21259 0.94502 1.01424 0.96528 1.21727 0.89299 1.05479 1.00986 1.21294 0.91448 0.75913 0.81674 1.90670 1.71272 1.47449 1.35768 1.46226 1.05925 1.64243 1.20418 1.20997 0.80080 0.94647 0.95945 1.22083 1.01276 0.99729 0.97459 1.22785 1.00853 0.96518 0.95272 1.23217 0.97665 0.93316 0.94030 1.64624 1.51472 1.03448 1.03871 1.22025 1.00310 0.96920 0.89028 1.20770 0.84778 0.89586 0.82431 1.90454 1.51786 1.46905 1.61046 1.41893 1.51858 1.21591 1.05472 1.19611 1.35234 1.00530 0.90989 0.90405 1.25991 0.97637 1.01472 0.95959 1.69659 1.44941 1.35573 1.05748 0.85020 0.78559 0.77703 0.77242 1.19843 1.19423 1.19836 1.23327 0.96890 0.95442 0.93372 0.74305 0.88872 0.89337 0.91375 0.90739 0.91667 0.92486 0.87421 0.86337 0.75079 0.91513 0.91910 0.90967 0.91665 0.91061 0.90670 0.95425 0.90885 0.86817 0.76950 0.91294 0.90921 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.91 19.25 74.32 1.43 -1.48 16 2 C -0.22 -3.33 13.34 31.12 0.42 -2.92 16 3 C -0.02 -0.22 5.70 28.79 0.16 -0.06 16 4 C -0.10 -1.11 5.17 30.60 0.16 -0.95 16 5 C -0.10 -1.29 4.50 30.60 0.14 -1.15 16 6 C -0.14 -1.53 5.70 29.85 0.17 -1.36 16 7 C 0.51 9.73 7.02 87.66 0.62 10.34 16 8 O -0.57 -15.53 12.87 -3.06 -0.04 -15.57 16 9 N -0.71 -12.26 5.15 -418.95 -2.16 -14.41 16 10 C 0.17 3.74 0.94 4.48 0.00 3.74 16 11 C -0.15 -3.08 8.16 71.98 0.59 -2.50 16 12 C -0.12 -3.36 5.85 31.80 0.19 -3.17 16 13 C 0.05 1.58 5.30 86.65 0.46 2.04 16 14 N -0.51 -16.14 5.26 -887.54 -4.67 -20.81 16 15 C 0.05 1.61 5.52 85.56 0.47 2.08 16 16 C 0.44 20.46 7.49 87.66 0.66 21.12 16 17 O -0.62 -33.54 13.10 -3.07 -0.04 -33.58 16 18 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 22 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C 0.04 0.81 6.15 86.44 0.53 1.34 16 28 H 0.24 1.50 7.80 -4.41 -0.03 1.46 16 29 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.41 4.68 8.09 -92.70 -0.75 3.93 16 38 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 39 H 0.06 1.56 6.04 -2.39 -0.01 1.55 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.06 2.01 6.81 -2.39 -0.02 1.99 16 42 H 0.07 2.19 7.84 -2.39 -0.02 2.17 16 43 H 0.08 3.30 5.97 -2.39 -0.01 3.29 16 44 H 0.03 0.97 8.02 -2.39 -0.02 0.95 16 45 H 0.07 2.08 7.81 -2.39 -0.02 2.06 16 46 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 48 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 49 H 0.07 1.22 6.89 -2.39 -0.02 1.20 16 50 H 0.11 2.00 7.69 -2.39 -0.02 1.98 16 Total: -1.00 -73.13 406.64 0.51 -72.61 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.54 Total: 37.10 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.27 Total: 8.96 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -8.17 Total: -114.29 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.08 Total: -49.15 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.13 0.51 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278381126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.603 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds