Wall clock time and date at job start Tue Mar 31 2020 19:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 119.46386 * 2 1 4 4 C 1.38357 * 119.30577 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.85571 * 179.97438 * 4 3 2 6 6 C 1.40024 * 118.28591 * 359.97438 * 4 3 2 7 7 C 1.47839 * 120.55515 * 179.97438 * 6 4 3 8 8 O 1.21558 * 120.00153 * 90.00315 * 7 6 4 9 9 N 1.34776 * 119.99865 * 270.00201 * 7 6 4 10 10 C 1.46498 * 120.00367 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99875 * 180.02562 * 9 7 6 12 12 C 1.52996 * 109.47477 * 89.99850 * 11 9 7 13 13 H 1.09003 * 109.46965 * 305.00256 * 12 11 9 14 14 O 1.42900 * 109.47156 * 64.99755 * 12 11 9 15 15 C 1.52998 * 109.47446 * 185.00100 * 12 11 9 16 16 N 1.46494 * 109.47284 * 180.02562 * 15 12 11 17 17 C 1.46502 * 120.00512 * 89.99787 * 16 15 12 18 18 C 1.36933 * 119.99857 * 269.99725 * 16 15 12 19 19 H 1.08004 * 120.00374 * 23.19346 * 18 16 15 20 20 C 1.38819 * 120.00315 * 203.18953 * 18 16 15 21 21 N 1.31616 * 119.99692 * 13.70894 * 20 18 16 22 22 Si 1.86796 * 120.00393 * 193.70942 * 20 18 16 23 23 H 1.48503 * 109.46914 * 59.99868 * 22 20 18 24 24 H 1.48495 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47103 * 300.00176 * 22 20 18 26 26 C 1.39509 * 118.88321 * 0.25808 * 6 4 3 27 27 C 1.50703 * 119.71674 * 179.74781 * 26 6 4 28 28 N 1.31693 * 120.57022 * 359.45466 * 26 6 4 29 29 H 1.09011 * 109.46995 * 90.00298 * 1 2 3 30 30 H 1.08998 * 109.47203 * 210.00574 * 1 2 3 31 31 H 1.09000 * 109.47359 * 330.00709 * 1 2 3 32 32 H 1.08004 * 120.34467 * 359.96404 * 3 2 1 33 33 H 1.09007 * 109.46794 * 270.01699 * 5 4 3 34 34 H 1.08997 * 109.47439 * 30.01170 * 5 4 3 35 35 H 1.08994 * 109.47485 * 150.02073 * 5 4 3 36 36 H 1.08997 * 109.47129 * 270.00375 * 10 9 7 37 37 H 1.09004 * 109.46806 * 30.00406 * 10 9 7 38 38 H 1.08999 * 109.47124 * 149.99919 * 10 9 7 39 39 H 1.09003 * 109.47115 * 329.99251 * 11 9 7 40 40 H 1.09001 * 109.47026 * 210.00051 * 11 9 7 41 41 H 0.96706 * 113.99711 * 60.00311 * 14 12 11 42 42 H 1.09003 * 109.47166 * 300.00033 * 15 12 11 43 43 H 1.08999 * 109.46951 * 59.99623 * 15 12 11 44 44 H 1.09003 * 109.47117 * 95.15174 * 17 16 15 45 45 H 1.08991 * 109.47507 * 215.15890 * 17 16 15 46 46 H 1.09005 * 109.46706 * 335.16439 * 17 16 15 47 47 H 0.96995 * 120.00378 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47702 * 90.00146 * 27 26 6 49 49 H 1.09004 * 109.46966 * 210.00180 * 27 26 6 50 50 H 1.09003 * 109.46856 * 329.99394 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3475 2.4923 -0.0011 6 6 4.2312 -0.0341 -0.0005 7 6 5.7082 -0.0967 -0.0016 8 8 6.3163 -0.1221 1.0506 9 7 6.3806 -0.1257 -1.1694 10 6 5.6478 -0.0958 -2.4376 11 6 7.8443 -0.1883 -1.1705 12 6 8.2922 -1.6512 -1.1705 13 1 7.8356 -2.1711 -0.3283 14 8 7.8863 -2.2737 -2.3911 15 6 9.8156 -1.7182 -1.0460 16 7 10.2446 -3.1189 -1.0466 17 6 10.5638 -3.7868 -2.3109 18 6 10.3472 -3.8041 0.1345 19 1 9.7832 -3.4809 0.9971 20 6 11.1759 -4.9142 0.2233 21 7 12.0599 -5.1528 -0.7221 22 14 11.0366 -6.0694 1.6846 23 1 9.6663 -6.6396 1.7359 24 1 12.0247 -7.1687 1.5426 25 1 11.3073 -5.3185 2.9368 26 6 3.4716 -1.2043 -0.0055 27 6 4.1626 -2.5435 -0.0113 28 7 2.1558 -1.1487 0.0007 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6443 2.1381 -0.0006 33 1 4.5340 2.8036 -1.0290 34 1 3.7723 3.2624 0.5129 35 1 5.2978 2.3453 0.5120 36 1 5.4228 -1.1151 -2.7514 37 1 4.7179 0.4577 -2.3068 38 1 6.2573 0.3924 -3.1980 39 1 8.2299 0.3098 -0.2809 40 1 8.2285 0.3094 -2.0609 41 1 8.2558 -1.8621 -3.1844 42 1 10.2723 -1.1984 -1.8882 43 1 10.1252 -1.2434 -0.1150 44 1 11.6376 -3.7315 -2.4900 45 1 10.2577 -4.8315 -2.2574 46 1 10.0338 -3.2940 -3.1260 47 1 12.6388 -5.9286 -0.6604 48 1 4.3294 -2.8709 1.0149 49 1 3.5383 -3.2723 -0.5282 50 1 5.1201 -2.4560 -0.5250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278865235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:08 Heat of formation + Delta-G solvation = -29.737862 kcal Electronic energy + Delta-G solvation = -30166.336265 eV Core-core repulsion = 26194.426095 eV Total energy + Delta-G solvation = -3971.910170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.14192 -39.40236 -37.41831 -35.33456 -34.58693 -34.40840 -33.89013 -31.36584 -29.99389 -29.26960 -28.14273 -27.58518 -26.91287 -25.78297 -25.25389 -22.77728 -21.83663 -21.27765 -20.58306 -19.60233 -17.52834 -17.30246 -16.83232 -16.38279 -15.72978 -15.33086 -15.08917 -15.00773 -14.81219 -14.61771 -14.23509 -13.71355 -13.60844 -13.48402 -13.40137 -13.22192 -13.11889 -13.04826 -12.86358 -12.76989 -12.53057 -12.49647 -12.16247 -11.95580 -11.90950 -11.85462 -11.47329 -11.09237 -10.81038 -10.66159 -10.53088 -10.33671 -10.24764 -10.02260 -9.82983 -9.77683 -9.70947 -9.53168 -8.96523 -8.64068 -8.35767 -6.62403 -5.65164 -3.11562 0.67990 0.95211 2.49779 2.92313 3.39444 3.45318 3.49458 3.52387 3.92096 4.25074 4.30064 4.40383 4.55733 4.78248 4.88841 4.95639 5.01515 5.07869 5.14430 5.16687 5.19663 5.25911 5.29545 5.31624 5.39539 5.44606 5.49708 5.57237 5.61057 5.67507 5.72615 5.80249 5.89499 5.91485 5.94886 5.96126 6.03457 6.05818 6.41726 6.47947 6.63916 6.77304 6.86611 7.27313 7.47600 7.75119 7.78360 7.88264 8.08602 8.18419 8.47079 9.30993 9.93942 10.42478 11.38884 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002926 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.608622 B = 9567.818083 C =10251.682679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.185 4.185 4 C -0.005 4.005 5 C -0.122 4.122 6 C -0.179 4.179 7 C 0.569 3.431 8 O -0.525 6.525 9 N -0.598 5.598 10 C 0.084 3.916 11 C 0.083 3.917 12 C 0.070 3.930 13 H 0.097 0.903 14 O -0.548 6.548 15 C 0.127 3.873 16 N -0.591 5.591 17 C 0.170 3.830 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.179 3.821 27 C -0.114 4.114 28 N -0.488 5.488 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.357 0.643 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.000 1.000 47 H 0.252 0.748 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 16.728 -5.168 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.205 4.205 4 C -0.013 4.013 5 C -0.179 4.179 6 C -0.184 4.184 7 C 0.355 3.645 8 O -0.401 6.401 9 N -0.330 5.330 10 C -0.060 4.060 11 C -0.040 4.040 12 C 0.007 3.993 13 H 0.115 0.885 14 O -0.351 6.351 15 C -0.003 4.003 16 N -0.313 5.313 17 C 0.025 3.975 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.041 3.959 27 C -0.171 4.171 28 N -0.198 5.198 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.203 0.797 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.762 15.394 -4.218 26.188 hybrid contribution 0.697 0.467 0.381 0.921 sum -20.065 15.861 -3.837 25.863 Atomic orbital electron populations 1.20744 0.88572 1.03637 1.03229 1.21415 0.97108 0.88112 0.92667 1.21708 0.93577 0.99432 1.05793 1.20282 0.93793 0.94338 0.92921 1.20907 1.00418 0.93414 1.03154 1.20624 0.94542 0.94588 1.08664 1.18019 0.86316 0.76304 0.83865 1.90841 1.69090 1.49257 1.30926 1.47737 1.07093 1.72393 1.05784 1.21771 0.96426 1.02554 0.85219 1.22443 0.78445 0.99677 1.03482 1.23281 0.98496 0.89942 0.87588 0.88497 1.86641 1.73766 1.59766 1.14974 1.21274 0.91159 0.88050 0.99769 1.43683 1.77858 1.05958 1.03790 1.20729 0.97133 0.95585 0.84015 1.19132 1.20178 1.08950 0.90095 0.91670 1.24985 0.96235 1.00431 0.97917 1.70061 1.21911 1.28845 1.34483 0.86354 0.77289 0.80670 0.82383 1.21069 1.21672 1.20904 1.21356 0.88738 0.94763 0.91065 1.20873 1.00260 0.91883 1.04073 1.67405 1.08864 1.29057 1.14509 0.90166 0.90252 0.90603 0.84414 0.90112 0.90409 0.90610 0.91668 0.92005 0.90981 0.89064 0.90397 0.79745 0.94407 0.92607 0.95590 0.94410 0.98144 0.93803 0.89585 0.89789 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.16 36.00 0.37 -0.34 16 2 C 0.14 1.49 6.78 -82.51 -0.56 0.93 16 3 C -0.19 -1.70 9.43 -39.50 -0.37 -2.07 16 4 C -0.01 -0.06 5.53 -103.91 -0.57 -0.63 16 5 C -0.12 -1.03 9.69 36.01 0.35 -0.68 16 6 C -0.18 -2.37 3.93 -104.83 -0.41 -2.78 16 7 C 0.57 8.51 4.21 -12.33 -0.05 8.46 16 8 O -0.53 -9.94 16.68 5.31 0.09 -9.85 16 9 N -0.60 -7.63 2.84 -182.69 -0.52 -8.14 16 10 C 0.08 0.81 9.90 59.85 0.59 1.40 16 11 C 0.08 1.10 5.11 -4.04 -0.02 1.08 16 12 C 0.07 1.21 3.48 -26.73 -0.09 1.11 16 13 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 14 O -0.55 -9.09 11.70 -35.23 -0.41 -9.50 16 15 C 0.13 2.52 5.34 -4.05 -0.02 2.50 16 16 N -0.59 -15.05 2.84 -181.12 -0.51 -15.56 16 17 C 0.17 4.23 8.66 59.85 0.52 4.75 16 18 C -0.25 -7.23 9.65 -15.06 -0.15 -7.37 16 19 H 0.07 1.85 7.87 -52.48 -0.41 1.44 16 20 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 21 N -0.91 -27.16 10.76 55.49 0.60 -26.56 16 22 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 26 C 0.18 2.45 6.82 -82.18 -0.56 1.89 16 27 C -0.11 -1.56 9.79 36.01 0.35 -1.20 16 28 N -0.49 -6.31 10.17 -5.42 -0.06 -6.36 16 29 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.35 8.07 -51.93 -0.42 -0.06 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.79 7.19 -51.93 -0.37 0.42 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 38 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 39 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 40 H 0.08 0.81 7.89 -51.93 -0.41 0.40 16 41 H 0.36 4.61 8.79 45.56 0.40 5.01 16 42 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 43 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 44 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16 45 H 0.04 1.03 7.37 -51.93 -0.38 0.65 16 46 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.24 7.07 -51.93 -0.37 0.87 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -35.32 407.48 -8.04 -43.36 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.62 Total: 1.73 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.72 Total: 7.03 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.49 Total: -56.63 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.32 Total: -19.35 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.32 -8.04 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278865235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds