Wall clock time and date at job start Tue Mar 31 2020 19:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38352 * 119.46386 * 2 1 4 4 C 1.38357 * 119.30577 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.85571 * 179.97438 * 4 3 2 6 6 C 1.40024 * 118.28591 * 359.97438 * 4 3 2 7 7 C 1.47839 * 120.55515 * 179.97438 * 6 4 3 8 8 O 1.21558 * 120.00153 * 90.00315 * 7 6 4 9 9 N 1.34776 * 119.99865 * 270.00201 * 7 6 4 10 10 C 1.46498 * 120.00367 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99875 * 180.02562 * 9 7 6 12 12 C 1.52996 * 109.47477 * 89.99850 * 11 9 7 13 13 H 1.09003 * 109.46965 * 305.00256 * 12 11 9 14 14 O 1.42900 * 109.47156 * 64.99755 * 12 11 9 15 15 C 1.52998 * 109.47446 * 185.00100 * 12 11 9 16 16 N 1.46494 * 109.47284 * 180.02562 * 15 12 11 17 17 C 1.46502 * 120.00512 * 89.99787 * 16 15 12 18 18 C 1.36933 * 119.99857 * 269.99725 * 16 15 12 19 19 H 1.08004 * 120.00374 * 23.19346 * 18 16 15 20 20 C 1.38819 * 120.00315 * 203.18953 * 18 16 15 21 21 N 1.31616 * 119.99692 * 13.70894 * 20 18 16 22 22 Si 1.86796 * 120.00393 * 193.70942 * 20 18 16 23 23 H 1.48503 * 109.46914 * 59.99868 * 22 20 18 24 24 H 1.48495 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47103 * 300.00176 * 22 20 18 26 26 C 1.39509 * 118.88321 * 0.25808 * 6 4 3 27 27 C 1.50703 * 119.71674 * 179.74781 * 26 6 4 28 28 N 1.31693 * 120.57022 * 359.45466 * 26 6 4 29 29 H 1.09011 * 109.46995 * 90.00298 * 1 2 3 30 30 H 1.08998 * 109.47203 * 210.00574 * 1 2 3 31 31 H 1.09000 * 109.47359 * 330.00709 * 1 2 3 32 32 H 1.08004 * 120.34467 * 359.96404 * 3 2 1 33 33 H 1.09007 * 109.46794 * 270.01699 * 5 4 3 34 34 H 1.08997 * 109.47439 * 30.01170 * 5 4 3 35 35 H 1.08994 * 109.47485 * 150.02073 * 5 4 3 36 36 H 1.08997 * 109.47129 * 270.00375 * 10 9 7 37 37 H 1.09004 * 109.46806 * 30.00406 * 10 9 7 38 38 H 1.08999 * 109.47124 * 149.99919 * 10 9 7 39 39 H 1.09003 * 109.47115 * 329.99251 * 11 9 7 40 40 H 1.09001 * 109.47026 * 210.00051 * 11 9 7 41 41 H 0.96706 * 113.99711 * 60.00311 * 14 12 11 42 42 H 1.09003 * 109.47166 * 300.00033 * 15 12 11 43 43 H 1.08999 * 109.46951 * 59.99623 * 15 12 11 44 44 H 1.09003 * 109.47117 * 95.15174 * 17 16 15 45 45 H 1.08991 * 109.47507 * 215.15890 * 17 16 15 46 46 H 1.09005 * 109.46706 * 335.16439 * 17 16 15 47 47 H 0.96995 * 120.00378 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47702 * 90.00146 * 27 26 6 49 49 H 1.09004 * 109.46966 * 210.00180 * 27 26 6 50 50 H 1.09003 * 109.46856 * 329.99394 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3475 2.4923 -0.0011 6 6 4.2312 -0.0341 -0.0005 7 6 5.7082 -0.0967 -0.0016 8 8 6.3163 -0.1221 1.0506 9 7 6.3806 -0.1257 -1.1694 10 6 5.6478 -0.0958 -2.4376 11 6 7.8443 -0.1883 -1.1705 12 6 8.2922 -1.6512 -1.1705 13 1 7.8356 -2.1711 -0.3283 14 8 7.8863 -2.2737 -2.3911 15 6 9.8156 -1.7182 -1.0460 16 7 10.2446 -3.1189 -1.0466 17 6 10.5638 -3.7868 -2.3109 18 6 10.3472 -3.8041 0.1345 19 1 9.7832 -3.4809 0.9971 20 6 11.1759 -4.9142 0.2233 21 7 12.0599 -5.1528 -0.7221 22 14 11.0366 -6.0694 1.6846 23 1 9.6663 -6.6396 1.7359 24 1 12.0247 -7.1687 1.5426 25 1 11.3073 -5.3185 2.9368 26 6 3.4716 -1.2043 -0.0055 27 6 4.1626 -2.5435 -0.0113 28 7 2.1558 -1.1487 0.0007 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6443 2.1381 -0.0006 33 1 4.5340 2.8036 -1.0290 34 1 3.7723 3.2624 0.5129 35 1 5.2978 2.3453 0.5120 36 1 5.4228 -1.1151 -2.7514 37 1 4.7179 0.4577 -2.3068 38 1 6.2573 0.3924 -3.1980 39 1 8.2299 0.3098 -0.2809 40 1 8.2285 0.3094 -2.0609 41 1 8.2558 -1.8621 -3.1844 42 1 10.2723 -1.1984 -1.8882 43 1 10.1252 -1.2434 -0.1150 44 1 11.6376 -3.7315 -2.4900 45 1 10.2577 -4.8315 -2.2574 46 1 10.0338 -3.2940 -3.1260 47 1 12.6388 -5.9286 -0.6604 48 1 4.3294 -2.8709 1.0149 49 1 3.5383 -3.2723 -0.5282 50 1 5.1201 -2.4560 -0.5250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278865235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:06 Heat of formation + Delta-G solvation = -54.907225 kcal Electronic energy + Delta-G solvation = -30167.427691 eV Core-core repulsion = 26194.426095 eV Total energy + Delta-G solvation = -3973.001595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08482 -40.46532 -38.88081 -36.86940 -36.02738 -35.28627 -34.75455 -33.31383 -31.39634 -30.16328 -29.01803 -28.43175 -28.10155 -27.78461 -26.56801 -24.12294 -23.03500 -22.31133 -22.10830 -20.64302 -18.87589 -18.45134 -18.19143 -17.77590 -16.96427 -16.75967 -16.47403 -16.17489 -15.99908 -15.77476 -15.49625 -15.10433 -14.82560 -14.73236 -14.44712 -14.31267 -14.17100 -13.99854 -13.93157 -13.73228 -13.65484 -13.35678 -13.23978 -13.03689 -13.01224 -12.83025 -12.75436 -12.68608 -12.64790 -12.51388 -12.21878 -12.06548 -11.99421 -11.83011 -11.40249 -11.24568 -10.64815 -10.55937 -10.46318 -9.82851 -9.69620 -8.68204 -7.83699 -5.32225 -0.18144 0.12290 1.36553 1.40899 1.43501 1.50214 1.91276 2.48063 2.53833 3.08886 3.26302 3.35531 3.52847 3.55286 3.59335 3.73474 4.02816 4.04783 4.16558 4.24318 4.29513 4.31496 4.42183 4.46401 4.48749 4.51486 4.54192 4.60717 4.63823 4.66553 4.73708 4.81359 4.88019 4.92362 4.94658 4.99794 5.00533 5.11008 5.15924 5.20226 5.22258 5.39532 5.46050 5.59981 5.64250 5.73191 6.22290 6.31653 6.88706 6.98399 7.03430 7.15064 7.88636 8.29235 9.16942 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002926 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.608622 B = 9567.818083 C =10251.682679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.136 3.864 3 C -0.172 4.172 4 C -0.008 4.008 5 C -0.119 4.119 6 C -0.198 4.198 7 C 0.569 3.431 8 O -0.578 6.578 9 N -0.592 5.592 10 C 0.082 3.918 11 C 0.092 3.908 12 C 0.092 3.908 13 H 0.047 0.953 14 O -0.559 6.559 15 C 0.123 3.877 16 N -0.610 5.610 17 C 0.186 3.814 18 C -0.263 4.263 19 H 0.055 0.945 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.961 3.039 23 H -0.284 1.284 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.160 3.840 27 C -0.107 4.107 28 N -0.510 5.510 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.179 0.821 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.379 0.621 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.043 0.957 47 H 0.249 0.751 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 19.569 -6.615 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.001 4.001 3 C -0.192 4.192 4 C -0.016 4.016 5 C -0.175 4.175 6 C -0.203 4.203 7 C 0.356 3.644 8 O -0.458 6.458 9 N -0.322 5.322 10 C -0.060 4.060 11 C -0.031 4.031 12 C 0.029 3.971 13 H 0.065 0.935 14 O -0.365 6.365 15 C -0.004 4.004 16 N -0.333 5.333 17 C 0.041 3.959 18 C -0.394 4.394 19 H 0.073 0.927 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.789 3.211 23 H -0.211 1.211 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.022 3.978 27 C -0.165 4.165 28 N -0.221 5.221 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.196 0.804 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.090 0.910 49 H 0.110 0.890 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.100 18.275 -5.713 30.004 hybrid contribution 1.296 -0.333 0.771 1.544 sum -21.804 17.942 -4.942 28.666 Atomic orbital electron populations 1.20863 0.85914 1.04629 1.04480 1.22118 0.98866 0.87821 0.91345 1.22122 0.92888 1.00626 1.03521 1.20631 0.94780 0.94133 0.92075 1.20954 0.99220 0.92847 1.04481 1.20553 0.93316 0.95765 1.10670 1.18375 0.87172 0.75185 0.83620 1.90802 1.70310 1.51847 1.32883 1.47780 1.06917 1.71040 1.06457 1.21961 0.97282 1.02526 0.84220 1.22277 0.79094 0.96714 1.05044 1.22689 0.95821 0.91930 0.86643 0.93470 1.86612 1.73901 1.60471 1.15486 1.21498 0.92908 0.85376 1.00618 1.43908 1.78278 1.08095 1.02991 1.20470 0.96037 0.94182 0.85183 1.19344 1.19492 1.09535 0.91031 0.92677 1.25681 0.96362 1.01916 1.00569 1.70199 1.22666 1.29160 1.36032 0.85438 0.77019 0.78824 0.79796 1.21100 1.21319 1.20204 1.21211 0.89403 0.94435 0.92739 1.20734 0.99611 0.93123 1.03011 1.67403 1.08371 1.30854 1.15497 0.88609 0.91037 0.87856 0.80372 0.87979 0.87884 0.93142 0.92742 0.90983 0.87692 0.90407 0.85844 0.77333 0.91000 0.93802 0.98002 0.97903 0.93906 0.94204 0.90999 0.88989 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.16 71.23 0.72 -0.32 16 2 C 0.14 2.48 6.78 42.57 0.29 2.77 16 3 C -0.17 -2.57 9.43 22.33 0.21 -2.35 16 4 C -0.01 -0.16 5.53 -19.40 -0.11 -0.27 16 5 C -0.12 -1.68 9.69 71.24 0.69 -0.99 16 6 C -0.20 -5.22 3.93 -20.00 -0.08 -5.30 16 7 C 0.57 17.42 4.21 86.78 0.37 17.79 16 8 O -0.58 -23.18 16.68 -3.90 -0.07 -23.24 16 9 N -0.59 -14.62 2.84 -850.20 -2.41 -17.04 16 10 C 0.08 1.40 9.90 127.77 1.26 2.67 16 11 C 0.09 2.34 5.11 86.38 0.44 2.78 16 12 C 0.09 3.17 3.48 30.59 0.11 3.28 16 13 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 14 O -0.56 -17.79 11.70 -148.98 -1.74 -19.53 16 15 C 0.12 4.87 5.34 86.38 0.46 5.33 16 16 N -0.61 -31.50 2.84 -726.94 -2.07 -33.57 16 17 C 0.19 9.32 8.66 127.77 1.11 10.43 16 18 C -0.26 -15.45 9.65 84.04 0.81 -14.64 16 19 H 0.06 3.27 7.87 -2.91 -0.02 3.25 16 20 C -0.05 -2.96 5.09 84.86 0.43 -2.53 16 21 N -0.93 -57.26 10.76 21.65 0.23 -57.03 16 22 Si 0.96 48.02 29.58 68.60 2.03 50.05 16 23 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 26 C 0.16 4.46 6.82 42.89 0.29 4.76 16 27 C -0.11 -3.17 9.79 71.24 0.70 -2.47 16 28 N -0.51 -12.94 10.17 -171.06 -1.74 -14.68 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.51 8.07 -2.39 -0.02 0.49 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.05 1.00 7.19 -2.39 -0.02 0.98 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.11 6.55 -2.39 -0.02 1.10 16 38 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 39 H 0.08 2.25 7.42 -2.39 -0.02 2.23 16 40 H 0.12 2.05 7.89 -2.39 -0.02 2.04 16 41 H 0.38 8.49 8.79 -74.05 -0.65 7.84 16 42 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 44 H 0.00 0.09 7.33 -2.39 -0.02 0.08 16 45 H 0.00 0.12 7.37 -2.39 -0.02 0.10 16 46 H 0.04 1.73 7.00 -2.38 -0.02 1.72 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.06 2.06 7.07 -2.39 -0.02 2.04 16 Total: -1.00 -82.28 407.48 2.22 -80.06 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.28 Total: 14.05 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 7.71 Total: 20.93 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.98 Total: -122.32 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.81 Total: -42.77 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -82.28 2.22 -80.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278865235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.151 kcal (2) G-P(sol) polarization free energy of solvation -82.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds