Wall clock time and date at job start Tue Mar 31 2020 19:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.46115 * 2 1 4 4 C 1.38351 * 119.30179 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.85644 * 179.97438 * 4 3 2 6 6 C 1.40024 * 118.28835 * 0.02562 * 4 3 2 7 7 C 1.47846 * 120.55949 * 179.97438 * 6 4 3 8 8 O 1.21555 * 119.99824 * 89.99439 * 7 6 4 9 9 N 1.34774 * 120.00148 * 269.99967 * 7 6 4 10 10 C 1.46504 * 120.00058 * 359.97438 * 9 7 6 11 11 C 1.46503 * 120.00038 * 179.97438 * 9 7 6 12 12 C 1.52990 * 109.46980 * 90.00106 * 11 9 7 13 13 H 1.09000 * 109.47594 * 59.99428 * 12 11 9 14 14 O 1.42904 * 109.47235 * 299.99746 * 12 11 9 15 15 C 1.52996 * 109.47301 * 179.97438 * 12 11 9 16 16 N 1.46501 * 109.47614 * 184.99552 * 15 12 11 17 17 C 1.46493 * 120.00619 * 270.00172 * 16 15 12 18 18 C 1.36941 * 119.99593 * 90.00375 * 16 15 12 19 19 H 1.07993 * 120.00388 * 22.67435 * 18 16 15 20 20 C 1.38815 * 119.99660 * 202.68282 * 18 16 15 21 21 N 1.31615 * 119.99916 * 11.49032 * 20 18 16 22 22 Si 1.86799 * 119.99922 * 191.48529 * 20 18 16 23 23 H 1.48507 * 109.46809 * 90.00119 * 22 20 18 24 24 H 1.48498 * 109.47425 * 210.00122 * 22 20 18 25 25 H 1.48503 * 109.47368 * 330.00317 * 22 20 18 26 26 C 1.39522 * 118.88437 * 0.26878 * 6 4 3 27 27 C 1.50701 * 119.71786 * 179.72754 * 26 6 4 28 28 N 1.31692 * 120.56195 * 359.41015 * 26 6 4 29 29 H 1.08999 * 109.46989 * 89.99801 * 1 2 3 30 30 H 1.08997 * 109.47064 * 210.00197 * 1 2 3 31 31 H 1.08997 * 109.46911 * 330.00095 * 1 2 3 32 32 H 1.07997 * 120.34457 * 359.97407 * 3 2 1 33 33 H 1.09003 * 109.47493 * 270.02606 * 5 4 3 34 34 H 1.09000 * 109.46955 * 30.02495 * 5 4 3 35 35 H 1.08998 * 109.47440 * 150.02775 * 5 4 3 36 36 H 1.08999 * 109.47060 * 270.00547 * 10 9 7 37 37 H 1.09006 * 109.46811 * 29.99553 * 10 9 7 38 38 H 1.08994 * 109.47547 * 149.99732 * 10 9 7 39 39 H 1.08992 * 109.47099 * 329.99975 * 11 9 7 40 40 H 1.08999 * 109.46830 * 209.99892 * 11 9 7 41 41 H 0.96692 * 113.99862 * 300.00249 * 14 12 11 42 42 H 1.08998 * 109.47304 * 305.00086 * 15 12 11 43 43 H 1.09006 * 109.47161 * 64.99489 * 15 12 11 44 44 H 1.09002 * 109.47224 * 93.92330 * 17 16 15 45 45 H 1.08992 * 109.47659 * 213.93439 * 17 16 15 46 46 H 1.09005 * 109.47028 * 333.93525 * 17 16 15 47 47 H 0.97008 * 119.99764 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46619 * 89.99871 * 27 26 6 49 49 H 1.08990 * 109.47387 * 210.00054 * 27 26 6 50 50 H 1.09003 * 109.46889 * 330.00357 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.3475 2.4923 0.0000 6 6 4.2312 -0.0340 0.0005 7 6 5.7083 -0.0967 0.0005 8 8 6.3155 -0.1224 1.0532 9 7 6.3816 -0.1253 -1.1667 10 6 5.6498 -0.0948 -2.4354 11 6 7.8454 -0.1869 -1.1666 12 6 8.2942 -1.6494 -1.1663 13 1 7.9096 -2.1478 -2.0562 14 8 7.7900 -2.3022 0.0006 15 6 9.8228 -1.7138 -1.1670 16 7 10.2529 -3.1091 -1.2870 17 6 10.4638 -3.9168 -0.0832 18 6 10.4578 -3.6583 -2.5246 19 1 10.6653 -3.0204 -3.3709 20 6 10.3986 -5.0352 -2.6913 21 7 9.9278 -5.7953 -1.7255 22 14 10.9872 -5.8090 -4.2863 23 1 12.4320 -6.1341 -4.1751 24 1 10.2186 -7.0527 -4.5463 25 1 10.7791 -4.8554 -5.4055 26 6 3.4716 -1.2043 -0.0058 27 6 4.1627 -2.5435 -0.0121 28 7 2.1559 -1.1487 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6444 2.1381 -0.0004 33 1 4.5348 2.8033 -1.0278 34 1 3.7720 3.2625 0.5135 35 1 5.2975 2.3454 0.5138 36 1 5.4250 -1.1140 -2.7498 37 1 4.7197 0.4586 -2.3052 38 1 6.2598 0.3937 -3.1952 39 1 8.2299 0.3114 -0.2768 40 1 8.2299 0.3111 -2.0567 41 1 8.0921 -1.9109 0.8316 42 1 10.2103 -1.1404 -2.0091 43 1 10.2045 -1.2948 -0.2359 44 1 9.5540 -4.4717 0.1461 45 1 11.2826 -4.6158 -0.2534 46 1 10.7116 -3.2638 0.7537 47 1 9.8861 -6.7575 -1.8422 48 1 4.3287 -2.8715 1.0140 49 1 3.5388 -3.2719 -0.5299 50 1 5.1205 -2.4556 -0.5250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278865236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:11 Heat of formation + Delta-G solvation = -52.268310 kcal Electronic energy + Delta-G solvation = -30387.585903 eV Core-core repulsion = 26414.698740 eV Total energy + Delta-G solvation = -3972.887164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.03777 -40.41926 -38.68305 -36.77555 -36.09026 -35.25417 -34.71912 -33.25909 -31.28535 -30.11699 -28.97655 -28.41117 -28.14841 -27.78951 -26.54381 -24.06499 -22.99178 -22.23285 -22.03731 -20.59451 -18.78052 -18.49407 -18.16550 -17.78526 -16.97504 -16.63181 -16.31509 -16.07999 -15.99361 -15.70841 -15.44053 -15.18743 -14.82098 -14.61217 -14.42561 -14.25505 -14.15050 -13.96620 -13.89288 -13.63971 -13.62459 -13.32074 -13.20218 -13.10951 -13.00564 -12.80385 -12.74266 -12.65503 -12.59421 -12.48205 -12.13234 -12.01368 -11.97062 -11.77038 -11.27715 -11.14093 -10.59121 -10.53566 -10.42809 -9.80146 -9.66066 -8.67142 -7.78678 -5.26939 -0.15509 0.14383 1.46031 1.46297 1.48679 1.56130 1.97295 2.52213 2.56298 3.11864 3.32974 3.39149 3.54292 3.60929 3.65059 3.78200 4.05252 4.13933 4.18975 4.24364 4.32673 4.34971 4.46945 4.50340 4.51914 4.53906 4.56246 4.61461 4.64225 4.69440 4.72902 4.80326 4.82050 4.87736 4.95723 5.00734 5.04569 5.13044 5.17530 5.21640 5.31320 5.34999 5.45299 5.65480 5.66456 5.80983 6.28350 6.34976 6.91640 6.98908 7.08032 7.17471 7.90549 8.35624 9.24471 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002936 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.971666 B = 9534.766933 C =10064.038517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.134 3.866 3 C -0.173 4.173 4 C -0.009 4.009 5 C -0.118 4.118 6 C -0.198 4.198 7 C 0.581 3.419 8 O -0.566 6.566 9 N -0.597 5.597 10 C 0.077 3.923 11 C 0.091 3.909 12 C 0.082 3.918 13 H 0.064 0.936 14 O -0.562 6.562 15 C 0.122 3.878 16 N -0.610 5.610 17 C 0.188 3.812 18 C -0.260 4.260 19 H 0.077 0.923 20 C -0.058 4.058 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.263 1.263 26 C 0.160 3.840 27 C -0.104 4.104 28 N -0.512 5.512 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.367 0.633 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.000 1.000 45 H 0.012 0.988 46 H 0.022 0.978 47 H 0.244 0.756 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 21.287 0.144 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.003 4.003 3 C -0.193 4.193 4 C -0.018 4.018 5 C -0.174 4.174 6 C -0.203 4.203 7 C 0.368 3.632 8 O -0.445 6.445 9 N -0.327 5.327 10 C -0.065 4.065 11 C -0.032 4.032 12 C 0.019 3.981 13 H 0.082 0.918 14 O -0.367 6.367 15 C -0.005 4.005 16 N -0.332 5.332 17 C 0.043 3.957 18 C -0.391 4.391 19 H 0.095 0.905 20 C -0.253 4.253 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.188 1.188 26 C 0.022 3.978 27 C -0.161 4.161 28 N -0.224 5.224 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.196 0.804 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.213 0.787 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.018 0.982 45 H 0.030 0.970 46 H 0.040 0.960 47 H 0.053 0.947 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.639 19.970 0.225 26.646 hybrid contribution 1.206 -0.422 -0.203 1.293 sum -16.433 19.548 0.021 25.538 Atomic orbital electron populations 1.20857 0.85989 1.04627 1.04393 1.22116 0.98849 0.87859 0.91506 1.22117 0.92991 1.00540 1.03620 1.20642 0.94749 0.94207 0.92152 1.20946 0.99319 0.92767 1.04377 1.20622 0.93806 0.95543 1.10360 1.18108 0.86729 0.74835 0.83512 1.90721 1.70075 1.51400 1.32286 1.47745 1.06978 1.71679 1.06330 1.21943 0.97746 1.01997 0.84856 1.22325 0.79005 0.96992 1.04866 1.22953 0.95790 0.91461 0.87874 0.91811 1.86591 1.74283 1.60024 1.15801 1.21645 0.92419 0.85767 1.00640 1.44058 1.77501 1.09032 1.02634 1.20413 0.97328 0.92056 0.85951 1.19581 1.40802 0.90648 0.88037 0.90544 1.25861 1.00904 0.97808 1.00679 1.70298 1.50074 1.03687 1.34354 0.85247 0.77326 0.77682 0.80068 1.21434 1.22681 1.18783 1.21230 0.89335 0.94540 0.92664 1.20693 0.99572 0.92850 1.03031 1.67393 1.08533 1.30921 1.15550 0.88770 0.91076 0.87779 0.80408 0.88231 0.87879 0.92845 0.93770 0.90417 0.87955 0.89768 0.86671 0.78673 0.91368 0.92331 0.98170 0.96962 0.95961 0.94684 0.90956 0.89876 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.16 71.24 0.72 -0.44 16 2 C 0.13 2.62 6.78 42.57 0.29 2.91 16 3 C -0.17 -2.74 9.43 22.33 0.21 -2.53 16 4 C -0.01 -0.19 5.53 -19.41 -0.11 -0.30 16 5 C -0.12 -1.69 9.69 71.23 0.69 -1.00 16 6 C -0.20 -5.38 3.93 -19.99 -0.08 -5.45 16 7 C 0.58 17.57 3.72 86.79 0.32 17.90 16 8 O -0.57 -20.90 15.47 4.48 0.07 -20.83 16 9 N -0.60 -15.64 2.83 -850.21 -2.40 -18.05 16 10 C 0.08 1.57 10.30 127.77 1.32 2.89 16 11 C 0.09 2.43 5.19 86.38 0.45 2.87 16 12 C 0.08 2.98 3.48 30.59 0.11 3.09 16 13 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 14 O -0.56 -23.54 11.71 -140.61 -1.65 -25.19 16 15 C 0.12 4.71 5.37 86.38 0.46 5.17 16 16 N -0.61 -30.92 2.89 -726.96 -2.10 -33.02 16 17 C 0.19 9.85 8.61 127.77 1.10 10.95 16 18 C -0.26 -14.30 9.67 84.03 0.81 -13.49 16 19 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 20 C -0.06 -3.30 5.12 84.86 0.43 -2.86 16 21 N -0.94 -57.82 10.61 21.65 0.23 -57.59 16 22 Si 0.97 45.73 29.57 68.60 2.03 47.76 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 26 C 0.16 4.72 6.82 42.89 0.29 5.01 16 27 C -0.10 -3.34 9.79 71.24 0.70 -2.64 16 28 N -0.51 -13.82 10.17 -171.05 -1.74 -15.56 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 32 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 35 H 0.05 1.03 7.19 -2.39 -0.02 1.02 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.39 6.55 -2.38 -0.02 1.37 16 38 H 0.10 1.51 7.89 -2.39 -0.02 1.49 16 39 H 0.08 2.26 7.42 -2.39 -0.02 2.24 16 40 H 0.12 2.31 7.89 -2.39 -0.02 2.29 16 41 H 0.37 14.23 8.44 -74.06 -0.63 13.60 16 42 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 43 H 0.06 2.04 7.87 -2.38 -0.02 2.02 16 44 H 0.00 0.00 7.43 -2.39 -0.02 -0.02 16 45 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 46 H 0.02 1.00 7.85 -2.38 -0.02 0.98 16 47 H 0.24 14.73 8.31 -92.70 -0.77 13.96 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 50 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 Total: -1.00 -77.70 406.37 2.47 -75.23 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.31 Total: 25.16 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.72 Total: 22.07 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.01 Total: -124.21 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.58 Total: -46.02 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.70 2.47 -75.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278865236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -77.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds