Wall clock time and date at job start Tue Mar 31 2020 19:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 119.40853 * 2 1 4 4 C 1.38341 * 119.45978 * 180.28186 * 3 2 1 5 5 C 1.50698 * 120.82469 * 179.97438 * 4 3 2 6 6 C 1.39983 * 118.34938 * 0.02562 * 4 3 2 7 7 C 1.47527 * 120.59672 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99826 * 269.97450 * 7 6 4 9 9 N 1.34769 * 119.99967 * 89.97380 * 7 6 4 10 10 C 1.46504 * 119.99933 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47038 * 325.00126 * 10 9 7 12 12 C 1.52996 * 109.47099 * 205.00360 * 10 9 7 13 13 N 1.46498 * 109.47654 * 55.00040 * 12 10 9 14 14 C 1.36936 * 120.00488 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99769 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00147 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47695 * 59.99163 * 18 16 14 20 20 H 1.48505 * 109.46805 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46864 * 299.98786 * 18 16 14 22 22 C 1.52999 * 109.47101 * 85.00101 * 10 9 7 23 23 C 1.53003 * 109.46824 * 59.99954 * 22 10 9 24 24 C 1.52998 * 109.47418 * 180.02562 * 22 10 9 25 25 C 1.52997 * 109.47039 * 300.00312 * 22 10 9 26 26 C 1.40281 * 118.80273 * 359.97438 * 6 4 3 27 27 O 1.35433 * 119.79610 * 179.97438 * 26 6 4 28 28 N 1.31884 * 119.40696 * 180.27820 * 2 1 3 29 29 H 1.09003 * 109.47048 * 269.72492 * 1 2 3 30 30 H 1.09004 * 109.47282 * 29.72163 * 1 2 3 31 31 H 1.08998 * 109.47786 * 149.72451 * 1 2 3 32 32 H 1.08009 * 120.27420 * 0.30535 * 3 2 1 33 33 H 1.08999 * 109.47634 * 270.02565 * 5 4 3 34 34 H 1.09006 * 109.47138 * 30.02367 * 5 4 3 35 35 H 1.09005 * 109.47345 * 150.02057 * 5 4 3 36 36 H 0.97003 * 120.00259 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46998 * 175.00215 * 12 10 9 38 38 H 1.08997 * 109.47366 * 294.99724 * 12 10 9 39 39 H 0.97005 * 119.99682 * 359.97438 * 13 12 10 40 40 H 0.96998 * 120.00051 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47229 * 60.00094 * 23 22 10 42 42 H 1.09004 * 109.47047 * 179.97438 * 23 22 10 43 43 H 1.08994 * 109.47321 * 299.99853 * 23 22 10 44 44 H 1.08996 * 109.46883 * 59.99926 * 24 22 10 45 45 H 1.08996 * 109.47284 * 180.02562 * 24 22 10 46 46 H 1.09007 * 109.47146 * 300.00536 * 24 22 10 47 47 H 1.08994 * 109.47476 * 59.99920 * 25 22 10 48 48 H 1.09004 * 109.46613 * 179.97438 * 25 22 10 49 49 H 1.08996 * 109.46921 * 299.99341 * 25 22 10 50 50 H 0.96696 * 113.99792 * 270.02187 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 -0.0059 5 6 4.3407 2.5012 -0.0067 6 6 4.2355 -0.0249 -0.0123 7 6 5.7097 -0.0814 -0.0182 8 8 6.3130 -0.1019 -1.0736 9 7 6.3876 -0.1103 1.1462 10 6 7.8515 -0.1670 1.1403 11 1 8.1884 -0.7680 0.2958 12 6 8.3426 -0.7991 2.4442 13 7 7.7081 -2.1075 2.6220 14 6 7.9966 -2.8640 3.7264 15 1 8.6921 -2.4962 4.4662 16 6 7.3957 -4.1040 3.8945 17 7 6.5484 -4.5524 2.9927 18 14 7.7887 -5.1356 5.4015 19 1 7.4126 -4.3856 6.6267 20 1 7.0225 -6.4065 5.3448 21 1 9.2429 -5.4348 5.4309 22 6 8.4162 1.2495 1.0158 23 6 7.9432 2.0931 2.2014 24 6 9.9451 1.1903 1.0090 25 6 7.9250 1.8816 -0.2880 26 6 3.4756 -1.2041 -0.0119 27 8 4.0990 -2.4064 -0.0185 28 7 2.1545 -1.1489 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8925 -0.5095 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6411 2.1376 0.0050 33 1 4.5219 2.8158 -1.0345 34 1 3.7643 3.2677 0.5115 35 1 5.2937 2.3570 0.5025 36 1 5.9062 -0.0943 1.9882 37 1 9.4248 -0.9227 2.4030 38 1 8.0825 -0.1523 3.2821 39 1 7.0831 -2.4377 1.9577 40 1 6.1283 -5.4188 3.1104 41 1 8.2931 1.6428 3.1303 42 1 8.3459 3.1022 2.1129 43 1 6.8541 2.1353 2.2058 44 1 10.2816 0.5894 0.1642 45 1 10.3474 2.1995 0.9208 46 1 10.2954 0.7398 1.9377 47 1 6.8359 1.9237 -0.2837 48 1 8.3270 2.8909 -0.3765 49 1 8.2620 1.2806 -1.1326 50 1 4.2759 -2.7528 -0.9038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278982399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:09 Heat of formation + Delta-G solvation = -39.935505 kcal Electronic energy + Delta-G solvation = -30960.477080 eV Core-core repulsion = 26988.124707 eV Total energy + Delta-G solvation = -3972.352373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98625 -39.62979 -37.36325 -37.12998 -34.39172 -34.27597 -33.11226 -31.77962 -30.97644 -28.65148 -28.03151 -27.35374 -27.14930 -26.46931 -23.90266 -23.22475 -21.92950 -21.32853 -20.38153 -18.61993 -18.27849 -17.67553 -17.27265 -16.81421 -16.02177 -15.44316 -15.34105 -14.83712 -14.52916 -14.21460 -13.95056 -13.89671 -13.56310 -13.49660 -13.34160 -13.09566 -13.06913 -12.98530 -12.66886 -12.54709 -12.26424 -12.01887 -11.96201 -11.91752 -11.73841 -11.48985 -11.36789 -11.19780 -11.07304 -10.76824 -10.70597 -10.46918 -10.23287 -10.00608 -9.92548 -9.68213 -9.60389 -9.29344 -8.83725 -8.79830 -8.58389 -6.88231 -5.69590 -3.00364 0.78103 1.06146 2.78305 3.31665 3.44769 3.46804 3.50715 3.52244 3.76539 4.39966 4.42480 4.60489 4.80514 4.90480 4.94336 5.03500 5.05979 5.17513 5.20213 5.28229 5.34617 5.41549 5.50435 5.56956 5.59775 5.67030 5.69743 5.78208 5.84261 5.86411 5.88648 5.92729 6.01131 6.03724 6.09721 6.11235 6.17423 6.30989 6.40604 6.46304 6.48585 6.50500 6.64381 6.74459 6.96010 7.60007 7.72751 7.81993 7.91477 8.46082 8.47645 9.58485 10.15146 10.50446 11.51456 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004817 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.314224 B = 5811.563277 C = 8223.425907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.194 4.194 4 C 0.008 3.992 5 C -0.127 4.127 6 C -0.202 4.202 7 C 0.579 3.421 8 O -0.537 6.537 9 N -0.693 5.693 10 C 0.148 3.852 11 H 0.087 0.913 12 C 0.142 3.858 13 N -0.730 5.730 14 C -0.247 4.247 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.137 4.137 26 C 0.364 3.636 27 O -0.459 6.459 28 N -0.507 5.507 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.404 0.596 37 H 0.035 0.965 38 H 0.027 0.973 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 17.441 -7.787 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.214 4.214 4 C 0.000 4.000 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.363 3.637 8 O -0.415 6.415 9 N -0.342 5.342 10 C 0.044 3.956 11 H 0.105 0.895 12 C 0.014 3.986 13 N -0.376 5.376 14 C -0.378 4.378 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.078 4.078 23 C -0.200 4.200 24 C -0.198 4.198 25 C -0.194 4.194 26 C 0.185 3.815 27 O -0.266 6.266 28 N -0.227 5.227 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.059 16.572 -7.781 19.621 hybrid contribution 0.243 -0.276 0.633 0.732 sum -6.817 16.296 -7.148 19.056 Atomic orbital electron populations 1.20782 0.88411 1.03630 1.03488 1.21149 0.96888 0.87193 0.92032 1.21699 0.93634 0.99428 1.06627 1.20197 0.93629 0.94066 0.92094 1.21047 1.00408 0.93256 1.03582 1.20966 0.95390 0.94024 1.10482 1.17611 0.85646 0.75961 0.84462 1.90786 1.69351 1.50287 1.31039 1.45930 1.07466 1.72584 1.08209 1.21333 0.78673 0.94976 1.00659 0.89456 1.21079 0.96412 0.88370 0.92714 1.42354 1.52946 1.15763 1.26494 1.19111 1.21440 0.98196 0.99043 0.91385 1.24746 0.99566 0.97874 0.98373 1.69672 1.32124 1.20156 1.35071 0.86327 0.77532 0.79855 0.82757 1.21369 1.21727 1.21327 1.20902 0.95827 0.95144 0.95909 1.21932 1.00854 0.99012 0.98159 1.21881 0.94072 1.01379 1.02484 1.22026 1.01307 0.99240 0.96824 1.19141 0.86195 0.85003 0.91191 1.84897 1.76239 1.31931 1.33515 1.67094 1.09409 1.30218 1.15978 0.89961 0.90435 0.90176 0.84148 0.89806 0.90344 0.90223 0.76062 0.94763 0.95549 0.77780 0.93467 0.91788 0.93116 0.93012 0.92538 0.92888 0.91851 0.92491 0.93908 0.91937 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.16 36.00 0.37 -0.52 16 2 C 0.17 2.03 6.78 -82.53 -0.56 1.47 16 3 C -0.19 -2.08 9.41 -39.50 -0.37 -2.45 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.13 -1.23 9.34 36.00 0.34 -0.89 16 6 C -0.20 -3.12 5.66 -104.69 -0.59 -3.72 16 7 C 0.58 9.67 4.01 -12.48 -0.05 9.62 16 8 O -0.54 -10.03 14.22 5.29 0.08 -9.95 16 9 N -0.69 -11.45 3.64 -54.85 -0.20 -11.64 16 10 C 0.15 2.48 1.69 -67.93 -0.11 2.37 16 11 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 12 C 0.14 2.77 5.10 -4.05 -0.02 2.75 16 13 N -0.73 -18.35 5.43 -59.91 -0.33 -18.67 16 14 C -0.25 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -28.34 13.06 55.49 0.72 -27.61 16 18 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.08 -1.02 0.62 -154.51 -0.10 -1.12 16 23 C -0.14 -1.72 7.97 37.16 0.30 -1.42 16 24 C -0.14 -1.75 8.12 37.16 0.30 -1.45 16 25 C -0.14 -1.82 6.99 37.16 0.26 -1.56 16 26 C 0.36 6.14 7.77 -16.61 -0.13 6.01 16 27 O -0.46 -8.33 13.01 -17.99 -0.23 -8.57 16 28 N -0.51 -7.99 10.28 -9.21 -0.09 -8.08 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.08 0.86 5.02 -51.93 -0.26 0.60 16 36 H 0.40 6.86 8.59 -40.82 -0.35 6.51 16 37 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 38 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 39 H 0.39 10.53 7.33 -40.82 -0.30 10.23 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.61 7.30 -51.93 -0.38 0.23 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.81 6.55 -51.92 -0.34 0.47 16 47 H 0.06 0.77 3.39 -51.93 -0.18 0.59 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.94 7.53 -51.93 -0.39 0.54 16 50 H 0.40 5.57 9.06 45.56 0.41 5.98 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -34.38 394.49 -7.31 -41.69 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -6.94 Total: 18.09 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.24 Total: 1.17 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: 0.10 Total: -66.01 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.16 Total: -18.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.38 -7.31 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278982399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.757 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds