Wall clock time and date at job start Tue Mar 31 2020 19:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 119.40853 * 2 1 4 4 C 1.38341 * 119.45978 * 180.28186 * 3 2 1 5 5 C 1.50698 * 120.82469 * 179.97438 * 4 3 2 6 6 C 1.39983 * 118.34938 * 0.02562 * 4 3 2 7 7 C 1.47527 * 120.59672 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99826 * 269.97450 * 7 6 4 9 9 N 1.34769 * 119.99967 * 89.97380 * 7 6 4 10 10 C 1.46504 * 119.99933 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47038 * 325.00126 * 10 9 7 12 12 C 1.52996 * 109.47099 * 205.00360 * 10 9 7 13 13 N 1.46498 * 109.47654 * 55.00040 * 12 10 9 14 14 C 1.36936 * 120.00488 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99769 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00147 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47695 * 59.99163 * 18 16 14 20 20 H 1.48505 * 109.46805 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46864 * 299.98786 * 18 16 14 22 22 C 1.52999 * 109.47101 * 85.00101 * 10 9 7 23 23 C 1.53003 * 109.46824 * 59.99954 * 22 10 9 24 24 C 1.52998 * 109.47418 * 180.02562 * 22 10 9 25 25 C 1.52997 * 109.47039 * 300.00312 * 22 10 9 26 26 C 1.40281 * 118.80273 * 359.97438 * 6 4 3 27 27 O 1.35433 * 119.79610 * 179.97438 * 26 6 4 28 28 N 1.31884 * 119.40696 * 180.27820 * 2 1 3 29 29 H 1.09003 * 109.47048 * 269.72492 * 1 2 3 30 30 H 1.09004 * 109.47282 * 29.72163 * 1 2 3 31 31 H 1.08998 * 109.47786 * 149.72451 * 1 2 3 32 32 H 1.08009 * 120.27420 * 0.30535 * 3 2 1 33 33 H 1.08999 * 109.47634 * 270.02565 * 5 4 3 34 34 H 1.09006 * 109.47138 * 30.02367 * 5 4 3 35 35 H 1.09005 * 109.47345 * 150.02057 * 5 4 3 36 36 H 0.97003 * 120.00259 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46998 * 175.00215 * 12 10 9 38 38 H 1.08997 * 109.47366 * 294.99724 * 12 10 9 39 39 H 0.97005 * 119.99682 * 359.97438 * 13 12 10 40 40 H 0.96998 * 120.00051 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47229 * 60.00094 * 23 22 10 42 42 H 1.09004 * 109.47047 * 179.97438 * 23 22 10 43 43 H 1.08994 * 109.47321 * 299.99853 * 23 22 10 44 44 H 1.08996 * 109.46883 * 59.99926 * 24 22 10 45 45 H 1.08996 * 109.47284 * 180.02562 * 24 22 10 46 46 H 1.09007 * 109.47146 * 300.00536 * 24 22 10 47 47 H 1.08994 * 109.47476 * 59.99920 * 25 22 10 48 48 H 1.09004 * 109.46613 * 179.97438 * 25 22 10 49 49 H 1.08996 * 109.46921 * 299.99341 * 25 22 10 50 50 H 0.96696 * 113.99792 * 270.02187 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 -0.0059 5 6 4.3407 2.5012 -0.0067 6 6 4.2355 -0.0249 -0.0123 7 6 5.7097 -0.0814 -0.0182 8 8 6.3130 -0.1019 -1.0736 9 7 6.3876 -0.1103 1.1462 10 6 7.8515 -0.1670 1.1403 11 1 8.1884 -0.7680 0.2958 12 6 8.3426 -0.7991 2.4442 13 7 7.7081 -2.1075 2.6220 14 6 7.9966 -2.8640 3.7264 15 1 8.6921 -2.4962 4.4662 16 6 7.3957 -4.1040 3.8945 17 7 6.5484 -4.5524 2.9927 18 14 7.7887 -5.1356 5.4015 19 1 7.4126 -4.3856 6.6267 20 1 7.0225 -6.4065 5.3448 21 1 9.2429 -5.4348 5.4309 22 6 8.4162 1.2495 1.0158 23 6 7.9432 2.0931 2.2014 24 6 9.9451 1.1903 1.0090 25 6 7.9250 1.8816 -0.2880 26 6 3.4756 -1.2041 -0.0119 27 8 4.0990 -2.4064 -0.0185 28 7 2.1545 -1.1489 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8925 -0.5095 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6411 2.1376 0.0050 33 1 4.5219 2.8158 -1.0345 34 1 3.7643 3.2677 0.5115 35 1 5.2937 2.3570 0.5025 36 1 5.9062 -0.0943 1.9882 37 1 9.4248 -0.9227 2.4030 38 1 8.0825 -0.1523 3.2821 39 1 7.0831 -2.4377 1.9577 40 1 6.1283 -5.4188 3.1104 41 1 8.2931 1.6428 3.1303 42 1 8.3459 3.1022 2.1129 43 1 6.8541 2.1353 2.2058 44 1 10.2816 0.5894 0.1642 45 1 10.3474 2.1995 0.9208 46 1 10.2954 0.7398 1.9377 47 1 6.8359 1.9237 -0.2837 48 1 8.3270 2.8909 -0.3765 49 1 8.2620 1.2806 -1.1326 50 1 4.2759 -2.7528 -0.9038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278982399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:08 Heat of formation + Delta-G solvation = -67.166131 kcal Electronic energy + Delta-G solvation = -30961.657888 eV Core-core repulsion = 26988.124707 eV Total energy + Delta-G solvation = -3973.533182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13066 -40.85475 -38.63347 -38.38772 -36.18490 -35.27920 -34.53338 -32.99714 -32.69939 -29.77930 -29.29334 -28.32944 -28.13985 -27.65054 -25.70591 -24.47030 -23.27615 -22.63225 -21.55870 -19.88899 -19.49892 -19.30375 -18.54227 -18.23793 -17.37594 -16.84435 -16.60320 -16.31167 -15.83635 -15.41797 -15.26400 -15.14005 -14.87004 -14.76897 -14.49839 -14.23976 -14.16732 -13.99584 -13.90922 -13.73684 -13.22274 -13.06276 -13.02316 -12.94028 -12.91147 -12.84014 -12.70874 -12.60114 -12.51410 -12.33533 -12.22677 -12.02439 -11.75788 -11.54154 -11.29389 -11.25272 -10.90927 -10.59686 -10.44418 -9.93884 -9.82504 -8.97929 -7.90789 -5.21584 -0.26406 0.06538 1.45676 1.47554 1.49016 1.55135 2.15127 2.35166 2.55982 2.67386 3.41055 3.44699 3.57004 3.62007 3.68614 3.86622 3.98694 4.06229 4.22276 4.25753 4.31532 4.34466 4.44506 4.52094 4.60331 4.63910 4.66304 4.80665 4.84892 4.85348 4.87954 4.93618 4.97757 5.01279 5.07143 5.09835 5.10246 5.16432 5.18612 5.28064 5.32609 5.45044 5.50311 5.54285 5.60682 5.62255 6.27237 6.44511 6.46898 6.85879 7.14036 7.34665 8.09914 8.32947 9.30774 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004817 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.314224 B = 5811.563277 C = 8223.425907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.155 3.845 3 C -0.177 4.177 4 C 0.008 3.992 5 C -0.125 4.125 6 C -0.223 4.223 7 C 0.585 3.415 8 O -0.563 6.563 9 N -0.690 5.690 10 C 0.158 3.842 11 H 0.055 0.945 12 C 0.144 3.856 13 N -0.743 5.743 14 C -0.247 4.247 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.962 5.962 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.300 1.300 21 H -0.277 1.277 22 C -0.069 4.069 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.131 4.131 26 C 0.334 3.666 27 O -0.490 6.490 28 N -0.537 5.537 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.189 0.811 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.038 0.962 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 20.997 -6.847 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.181 4.181 6 C -0.229 4.229 7 C 0.370 3.630 8 O -0.443 6.443 9 N -0.338 5.338 10 C 0.053 3.947 11 H 0.073 0.927 12 C 0.017 3.983 13 N -0.387 5.387 14 C -0.379 4.379 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.612 5.612 18 Si 0.800 3.200 19 H -0.202 1.202 20 H -0.226 1.226 21 H -0.204 1.204 22 C -0.071 4.071 23 C -0.195 4.195 24 C -0.197 4.197 25 C -0.188 4.188 26 C 0.156 3.844 27 O -0.299 6.299 28 N -0.258 5.258 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.206 0.794 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.706 20.176 -6.826 22.651 hybrid contribution 0.415 -1.292 0.294 1.388 sum -7.291 18.884 -6.533 21.271 Atomic orbital electron populations 1.20926 0.85521 1.05080 1.04502 1.21963 0.98781 0.86870 0.90627 1.22190 0.92957 1.00656 1.03843 1.20618 0.94675 0.93827 0.90849 1.21132 1.00006 0.92525 1.04388 1.20931 0.94313 0.95094 1.12597 1.17789 0.86319 0.74981 0.83872 1.90761 1.70157 1.51570 1.31818 1.45885 1.07281 1.72492 1.08144 1.21186 0.79060 0.96765 0.97720 0.92689 1.21233 0.96137 0.86267 0.94627 1.42553 1.53007 1.17578 1.25521 1.19563 1.20465 0.98326 0.99527 0.90370 1.25572 1.00115 0.99439 1.01417 1.69867 1.33887 1.20224 1.37254 0.85257 0.77424 0.77741 0.79568 1.20223 1.22614 1.20351 1.20856 0.96353 0.92849 0.97020 1.21895 1.01076 0.99843 0.96689 1.21886 0.93233 1.02752 1.01848 1.21951 1.01243 1.00050 0.95556 1.19330 0.87004 0.84731 0.93383 1.84845 1.76865 1.33410 1.34775 1.67094 1.08959 1.32460 1.17271 0.88928 0.86842 0.90929 0.79428 0.89006 0.86905 0.91428 0.76335 0.94405 0.94023 0.79442 0.94344 0.92456 0.90633 0.92850 0.93499 0.90337 0.92280 0.92739 0.91356 0.94299 0.72822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.16 71.23 0.72 -0.73 16 2 C 0.16 3.56 6.78 42.58 0.29 3.85 16 3 C -0.18 -3.24 9.41 22.32 0.21 -3.03 16 4 C 0.01 0.19 5.95 -19.42 -0.12 0.07 16 5 C -0.12 -2.05 9.34 71.24 0.66 -1.38 16 6 C -0.22 -7.06 5.66 -19.91 -0.11 -7.17 16 7 C 0.58 20.35 4.01 86.69 0.35 20.69 16 8 O -0.56 -22.11 14.22 -3.99 -0.06 -22.17 16 9 N -0.69 -23.56 3.64 -445.73 -1.62 -25.18 16 10 C 0.16 5.41 1.69 44.99 0.08 5.49 16 11 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 12 C 0.14 5.66 5.10 86.38 0.44 6.10 16 13 N -0.74 -38.41 5.43 -343.47 -1.87 -40.27 16 14 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 17 N -0.96 -61.28 13.06 21.65 0.28 -61.00 16 18 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 C -0.07 -1.79 0.62 -52.18 -0.03 -1.82 16 23 C -0.14 -2.99 7.97 71.98 0.57 -2.42 16 24 C -0.14 -3.29 8.12 71.98 0.58 -2.70 16 25 C -0.13 -3.33 6.99 71.98 0.50 -2.83 16 26 C 0.33 11.92 7.77 85.13 0.66 12.58 16 27 O -0.49 -19.59 13.01 -87.29 -1.14 -20.73 16 28 N -0.54 -17.36 10.28 -296.07 -3.04 -20.40 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.78 8.07 -2.38 -0.02 0.77 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.07 1.31 5.02 -2.38 -0.01 1.30 16 36 H 0.40 14.07 8.59 -92.71 -0.80 13.28 16 37 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 38 H 0.04 1.55 6.17 -2.39 -0.01 1.54 16 39 H 0.37 21.31 7.33 -92.70 -0.68 20.63 16 40 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.06 1.33 6.32 -2.39 -0.02 1.31 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.15 7.30 -2.39 -0.02 1.13 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.43 6.55 -2.38 -0.02 1.42 16 47 H 0.05 1.42 3.39 -2.39 -0.01 1.41 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.04 1.17 7.53 -2.39 -0.02 1.15 16 50 H 0.41 13.11 9.06 -74.06 -0.67 12.44 16 Total: -1.00 -78.31 394.49 -0.45 -78.75 By element: Atomic # 1 Polarization: 53.12 SS G_CDS: -1.15 Total: 51.96 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.12 Total: 9.77 kcal Atomic # 7 Polarization: -140.61 SS G_CDS: -6.25 Total: -146.85 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.19 Total: -42.90 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.31 -0.45 -78.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278982399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.587 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds