Wall clock time and date at job start Tue Mar 31 2020 19:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38359 * 119.40686 * 2 1 4 4 C 1.38339 * 119.45952 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.82476 * 179.97438 * 4 3 2 6 6 C 1.39983 * 118.34888 * 359.97438 * 4 3 2 7 7 C 1.47523 * 120.59718 * 180.02562 * 6 4 3 8 8 O 1.21586 * 119.99966 * 91.63682 * 7 6 4 9 9 N 1.34781 * 119.99606 * 271.63303 * 7 6 4 10 10 C 1.46504 * 119.99656 * 178.02287 * 9 7 6 11 11 H 1.09009 * 109.47006 * 28.04767 * 10 9 7 12 12 C 1.52997 * 109.46989 * 148.05043 * 10 9 7 13 13 N 1.46493 * 109.47513 * 304.99710 * 12 10 9 14 14 C 1.36936 * 120.00503 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00390 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00096 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99900 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46856 * 90.00274 * 18 16 14 20 20 H 1.48497 * 109.46887 * 210.00278 * 18 16 14 21 21 H 1.48497 * 109.46944 * 330.00427 * 18 16 14 22 22 C 1.53003 * 109.46826 * 268.05108 * 10 9 7 23 23 C 1.52996 * 109.47255 * 306.39460 * 22 10 9 24 24 C 1.53005 * 109.46930 * 186.39472 * 22 10 9 25 25 C 1.53003 * 109.47247 * 66.39472 * 22 10 9 26 26 C 1.40290 * 118.80612 * 0.28245 * 6 4 3 27 27 O 1.35427 * 119.79939 * 179.70502 * 26 6 4 28 28 N 1.31875 * 119.40906 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47325 * 90.00383 * 1 2 3 30 30 H 1.08998 * 109.47519 * 210.00416 * 1 2 3 31 31 H 1.08997 * 109.47494 * 330.00472 * 1 2 3 32 32 H 1.07995 * 120.26796 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46961 * 263.67317 * 5 4 3 34 34 H 1.09001 * 109.47503 * 23.67207 * 5 4 3 35 35 H 1.08996 * 109.47657 * 143.67843 * 5 4 3 36 36 H 0.96991 * 120.00428 * 358.02465 * 9 7 6 37 37 H 1.09000 * 109.46952 * 65.00430 * 12 10 9 38 38 H 1.09006 * 109.46703 * 185.00032 * 12 10 9 39 39 H 0.97002 * 119.99815 * 0.02562 * 13 12 10 40 40 H 0.97004 * 119.99892 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.47162 * 300.00145 * 23 22 10 42 42 H 1.09000 * 109.47449 * 179.97438 * 23 22 10 43 43 H 1.08999 * 109.47109 * 59.99912 * 23 22 10 44 44 H 1.09000 * 109.46741 * 179.97438 * 24 22 10 45 45 H 1.08997 * 109.47147 * 299.99971 * 24 22 10 46 46 H 1.08998 * 109.47089 * 60.00099 * 24 22 10 47 47 H 1.09000 * 109.47037 * 297.33584 * 25 22 10 48 48 H 1.09000 * 109.46766 * 57.33390 * 25 22 10 49 49 H 1.08992 * 109.47028 * 177.33411 * 25 22 10 50 50 H 0.96700 * 114.00448 * 89.99608 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2355 -0.0247 -0.0005 7 6 5.7097 -0.0813 -0.0005 8 8 6.3160 -0.1346 1.0520 9 7 6.3843 -0.0739 -1.1673 10 6 7.8493 -0.0862 -1.1665 11 1 8.2079 -0.5827 -0.2647 12 6 8.3536 -0.8400 -2.3986 13 7 7.7583 -2.1782 -2.4301 14 6 8.0654 -3.0406 -3.4485 15 1 8.7470 -2.7343 -4.2283 16 6 7.5009 -4.3083 -3.4786 17 7 7.7966 -5.1373 -4.4571 18 14 6.3226 -4.8383 -2.1293 19 1 4.9340 -4.4818 -2.5166 20 1 6.4208 -6.3072 -1.9353 21 1 6.6764 -4.1470 -0.8635 22 6 8.3714 1.3516 -1.1990 23 6 7.7414 2.0964 -2.3777 24 6 9.8930 1.3381 -1.3588 25 6 8.0019 2.0581 0.1069 26 6 3.4757 -1.2041 -0.0060 27 8 4.0991 -2.4063 -0.0121 28 7 2.1545 -1.1488 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6410 2.1375 0.0004 33 1 4.6234 2.7554 -1.0227 34 1 3.7181 3.2952 0.4115 35 1 5.2382 2.3902 0.6072 36 1 5.8999 -0.0603 -2.0075 37 1 8.0704 -0.2950 -3.2991 38 1 9.4392 -0.9264 -2.3525 39 1 7.1464 -2.4534 -1.7295 40 1 7.4017 -6.0231 -4.4783 41 1 8.0045 1.5931 -3.3080 42 1 8.1130 3.1208 -2.4006 43 1 6.6574 2.1060 -2.2638 44 1 10.2649 2.3624 -1.3825 45 1 10.3418 0.8075 -0.5191 46 1 10.1562 0.8348 -2.2892 47 1 6.9169 2.1096 0.1978 48 1 8.4111 1.5010 0.9497 49 1 8.4145 3.0669 0.1035 50 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278982400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:13 Heat of formation + Delta-G solvation = -39.679705 kcal Electronic energy + Delta-G solvation = -31147.178579 eV Core-core repulsion = 27174.837299 eV Total energy + Delta-G solvation = -3972.341281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.13101 -39.73880 -37.58400 -37.36392 -34.56720 -34.41680 -33.25154 -31.94170 -31.24430 -28.85360 -28.29720 -27.56855 -27.24684 -26.65898 -23.95545 -23.27408 -21.99036 -21.27480 -20.54381 -18.83497 -18.50425 -17.99992 -17.43675 -17.14107 -16.14910 -15.63935 -15.44306 -14.89339 -14.56887 -14.39054 -14.16362 -13.97977 -13.68800 -13.64568 -13.46379 -13.22897 -13.12591 -13.07935 -12.79086 -12.62960 -12.39017 -12.22695 -12.10435 -12.06716 -11.87635 -11.72102 -11.53493 -11.44336 -11.22190 -10.77179 -10.73164 -10.62715 -10.30416 -10.19450 -9.99428 -9.75642 -9.56265 -9.46419 -8.96968 -8.86606 -8.76124 -7.20173 -5.73610 -3.09575 0.61582 0.90794 2.60283 3.14886 3.25584 3.48615 3.52602 3.57134 3.61200 4.26007 4.28170 4.64001 4.66498 4.73536 4.78766 4.91531 4.93931 5.03578 5.07448 5.14259 5.21662 5.30535 5.36732 5.40149 5.53483 5.55094 5.57805 5.68406 5.72072 5.73723 5.76222 5.78558 5.85477 5.88330 5.93895 6.00258 6.05150 6.17629 6.25636 6.30767 6.36550 6.37439 6.48061 6.62443 6.80958 7.37126 7.62611 7.73008 8.01283 8.28417 8.44849 9.24588 9.97358 10.16440 11.44102 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.005675 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.843187 B = 4932.707993 C = 7431.831901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.190 4.190 4 C 0.010 3.990 5 C -0.128 4.128 6 C -0.203 4.203 7 C 0.577 3.423 8 O -0.535 6.535 9 N -0.697 5.697 10 C 0.141 3.859 11 H 0.093 0.907 12 C 0.147 3.853 13 N -0.754 5.754 14 C -0.247 4.247 15 H 0.089 0.911 16 C 0.007 3.993 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.276 1.276 22 C -0.075 4.075 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.137 4.137 26 C 0.360 3.640 27 O -0.469 6.469 28 N -0.506 5.506 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.404 0.596 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 19.782 10.425 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.210 4.210 4 C 0.002 3.998 5 C -0.184 4.184 6 C -0.209 4.209 7 C 0.362 3.638 8 O -0.412 6.412 9 N -0.346 5.346 10 C 0.036 3.964 11 H 0.111 0.889 12 C 0.019 3.981 13 N -0.400 5.400 14 C -0.376 4.376 15 H 0.107 0.893 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.202 1.202 22 C -0.077 4.077 23 C -0.200 4.200 24 C -0.200 4.200 25 C -0.195 4.195 26 C 0.180 3.820 27 O -0.277 6.277 28 N -0.226 5.226 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.239 0.761 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.198 0.802 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -9.869 18.882 10.366 23.693 hybrid contribution -0.601 -0.084 0.901 1.086 sum -10.470 18.798 11.267 24.288 Atomic orbital electron populations 1.20794 0.88240 1.03763 1.03579 1.21179 0.96970 0.87116 0.91830 1.21746 0.93608 0.99501 1.06173 1.20212 0.93642 0.94054 0.91868 1.21059 1.00558 0.93065 1.03693 1.20941 0.95304 0.94057 1.10620 1.17688 0.85746 0.75943 0.84459 1.90794 1.69227 1.50036 1.31188 1.45966 1.07552 1.72912 1.08192 1.21446 0.78642 0.94912 1.01351 0.88924 1.21065 0.96927 0.86229 0.93859 1.42705 1.55561 1.12010 1.29741 1.19006 1.23301 0.93685 1.01625 0.89272 1.24653 1.00001 0.96415 0.97818 1.69710 1.47645 1.07896 1.32879 0.86535 0.82018 0.77333 0.82619 1.20613 1.22128 1.20202 1.20874 0.96029 0.94791 0.95957 1.21913 1.00313 0.99672 0.98076 1.21914 0.93885 1.01566 1.02636 1.21947 1.01430 0.99349 0.96734 1.19096 0.86305 0.84750 0.91801 1.84817 1.76444 1.32373 1.34075 1.67078 1.09254 1.30376 1.15911 0.89849 0.90132 0.90303 0.83948 0.89710 0.90317 0.89976 0.76094 0.94837 0.93827 0.80218 0.93125 0.91771 0.92917 0.92980 0.92763 0.92476 0.91550 0.92758 0.92257 0.93338 0.73494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 36.00 0.37 -0.44 16 2 C 0.17 1.89 6.78 -82.53 -0.56 1.33 16 3 C -0.19 -1.85 9.39 -39.50 -0.37 -2.23 16 4 C 0.01 0.12 5.95 -103.93 -0.62 -0.50 16 5 C -0.13 -1.11 9.45 36.00 0.34 -0.77 16 6 C -0.20 -2.93 5.66 -104.69 -0.59 -3.52 16 7 C 0.58 9.10 4.27 -12.47 -0.05 9.05 16 8 O -0.54 -9.64 15.28 5.29 0.08 -9.56 16 9 N -0.70 -10.68 3.35 -54.85 -0.18 -10.86 16 10 C 0.14 2.21 1.68 -67.93 -0.11 2.09 16 11 H 0.09 1.66 7.34 -51.92 -0.38 1.28 16 12 C 0.15 2.73 5.03 -4.05 -0.02 2.71 16 13 N -0.75 -18.02 5.24 -59.91 -0.31 -18.34 16 14 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 16 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.87 13.97 55.49 0.78 -29.10 16 18 Si 0.88 23.47 27.74 -169.99 -4.71 18.75 16 19 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 21 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 22 C -0.07 -0.92 0.63 -154.50 -0.10 -1.02 16 23 C -0.14 -1.56 8.03 37.16 0.30 -1.27 16 24 C -0.14 -1.65 7.95 37.16 0.30 -1.36 16 25 C -0.14 -1.64 7.28 37.16 0.27 -1.37 16 26 C 0.36 5.70 7.77 -16.61 -0.13 5.58 16 27 O -0.47 -8.01 13.01 -17.97 -0.23 -8.25 16 28 N -0.51 -7.49 10.28 -9.21 -0.09 -7.59 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.08 0.83 5.16 -51.93 -0.27 0.57 16 36 H 0.40 6.12 8.54 -40.82 -0.35 5.78 16 37 H 0.03 0.61 6.40 -51.93 -0.33 0.28 16 38 H 0.04 0.82 6.64 -51.93 -0.34 0.48 16 39 H 0.36 8.89 5.20 -40.82 -0.21 8.68 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.06 0.75 6.51 -51.93 -0.34 0.42 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.81 6.45 -51.93 -0.33 0.47 16 47 H 0.05 0.66 4.01 -51.93 -0.21 0.45 16 48 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.41 5.21 9.06 45.56 0.41 5.63 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -36.08 393.84 -6.95 -43.03 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.97 Total: 14.77 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.24 Total: 1.21 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: 0.18 Total: -65.89 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.15 Total: -17.81 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.71 Total: 18.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.08 -6.95 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278982400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.353 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds