Wall clock time and date at job start Tue Mar 31 2020 19:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38359 * 119.40686 * 2 1 4 4 C 1.38339 * 119.45952 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.82476 * 179.97438 * 4 3 2 6 6 C 1.39983 * 118.34888 * 359.97438 * 4 3 2 7 7 C 1.47523 * 120.59718 * 180.02562 * 6 4 3 8 8 O 1.21586 * 119.99966 * 91.63682 * 7 6 4 9 9 N 1.34781 * 119.99606 * 271.63303 * 7 6 4 10 10 C 1.46504 * 119.99656 * 178.02287 * 9 7 6 11 11 H 1.09009 * 109.47006 * 28.04767 * 10 9 7 12 12 C 1.52997 * 109.46989 * 148.05043 * 10 9 7 13 13 N 1.46493 * 109.47513 * 304.99710 * 12 10 9 14 14 C 1.36936 * 120.00503 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00390 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00096 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99900 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46856 * 90.00274 * 18 16 14 20 20 H 1.48497 * 109.46887 * 210.00278 * 18 16 14 21 21 H 1.48497 * 109.46944 * 330.00427 * 18 16 14 22 22 C 1.53003 * 109.46826 * 268.05108 * 10 9 7 23 23 C 1.52996 * 109.47255 * 306.39460 * 22 10 9 24 24 C 1.53005 * 109.46930 * 186.39472 * 22 10 9 25 25 C 1.53003 * 109.47247 * 66.39472 * 22 10 9 26 26 C 1.40290 * 118.80612 * 0.28245 * 6 4 3 27 27 O 1.35427 * 119.79939 * 179.70502 * 26 6 4 28 28 N 1.31875 * 119.40906 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47325 * 90.00383 * 1 2 3 30 30 H 1.08998 * 109.47519 * 210.00416 * 1 2 3 31 31 H 1.08997 * 109.47494 * 330.00472 * 1 2 3 32 32 H 1.07995 * 120.26796 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46961 * 263.67317 * 5 4 3 34 34 H 1.09001 * 109.47503 * 23.67207 * 5 4 3 35 35 H 1.08996 * 109.47657 * 143.67843 * 5 4 3 36 36 H 0.96991 * 120.00428 * 358.02465 * 9 7 6 37 37 H 1.09000 * 109.46952 * 65.00430 * 12 10 9 38 38 H 1.09006 * 109.46703 * 185.00032 * 12 10 9 39 39 H 0.97002 * 119.99815 * 0.02562 * 13 12 10 40 40 H 0.97004 * 119.99892 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.47162 * 300.00145 * 23 22 10 42 42 H 1.09000 * 109.47449 * 179.97438 * 23 22 10 43 43 H 1.08999 * 109.47109 * 59.99912 * 23 22 10 44 44 H 1.09000 * 109.46741 * 179.97438 * 24 22 10 45 45 H 1.08997 * 109.47147 * 299.99971 * 24 22 10 46 46 H 1.08998 * 109.47089 * 60.00099 * 24 22 10 47 47 H 1.09000 * 109.47037 * 297.33584 * 25 22 10 48 48 H 1.09000 * 109.46766 * 57.33390 * 25 22 10 49 49 H 1.08992 * 109.47028 * 177.33411 * 25 22 10 50 50 H 0.96700 * 114.00448 * 89.99608 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2355 -0.0247 -0.0005 7 6 5.7097 -0.0813 -0.0005 8 8 6.3160 -0.1346 1.0520 9 7 6.3843 -0.0739 -1.1673 10 6 7.8493 -0.0862 -1.1665 11 1 8.2079 -0.5827 -0.2647 12 6 8.3536 -0.8400 -2.3986 13 7 7.7583 -2.1782 -2.4301 14 6 8.0654 -3.0406 -3.4485 15 1 8.7470 -2.7343 -4.2283 16 6 7.5009 -4.3083 -3.4786 17 7 7.7966 -5.1373 -4.4571 18 14 6.3226 -4.8383 -2.1293 19 1 4.9340 -4.4818 -2.5166 20 1 6.4208 -6.3072 -1.9353 21 1 6.6764 -4.1470 -0.8635 22 6 8.3714 1.3516 -1.1990 23 6 7.7414 2.0964 -2.3777 24 6 9.8930 1.3381 -1.3588 25 6 8.0019 2.0581 0.1069 26 6 3.4757 -1.2041 -0.0060 27 8 4.0991 -2.4063 -0.0121 28 7 2.1545 -1.1488 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6410 2.1375 0.0004 33 1 4.6234 2.7554 -1.0227 34 1 3.7181 3.2952 0.4115 35 1 5.2382 2.3902 0.6072 36 1 5.8999 -0.0603 -2.0075 37 1 8.0704 -0.2950 -3.2991 38 1 9.4392 -0.9264 -2.3525 39 1 7.1464 -2.4534 -1.7295 40 1 7.4017 -6.0231 -4.4783 41 1 8.0045 1.5931 -3.3080 42 1 8.1130 3.1208 -2.4006 43 1 6.6574 2.1060 -2.2638 44 1 10.2649 2.3624 -1.3825 45 1 10.3418 0.8075 -0.5191 46 1 10.1562 0.8348 -2.2892 47 1 6.9169 2.1096 0.1978 48 1 8.4111 1.5010 0.9497 49 1 8.4145 3.0669 0.1035 50 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278982400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:12 Heat of formation + Delta-G solvation = -68.532220 kcal Electronic energy + Delta-G solvation = -31148.429718 eV Core-core repulsion = 27174.837299 eV Total energy + Delta-G solvation = -3973.592420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.16869 -40.87982 -38.76424 -38.49944 -36.35863 -35.32307 -34.58980 -33.35797 -32.79033 -30.03403 -29.42327 -28.39149 -28.14948 -27.72067 -25.57009 -24.48114 -23.25612 -22.66045 -21.62612 -20.17180 -19.69597 -19.57832 -18.63411 -18.29790 -17.40870 -16.90386 -16.71486 -16.13900 -16.11847 -15.65260 -15.29345 -15.01223 -14.85695 -14.80503 -14.57720 -14.51280 -14.20435 -14.05971 -13.96545 -13.89270 -13.38303 -13.28672 -13.15658 -13.03346 -13.00204 -12.88298 -12.79899 -12.67462 -12.50943 -12.31762 -12.19259 -11.99838 -11.86982 -11.60762 -11.36338 -11.33273 -11.01183 -10.64942 -10.50547 -10.03033 -9.89242 -9.32181 -8.07703 -5.39076 -0.32711 0.01647 1.31828 1.38962 1.39522 1.41579 2.07043 2.27063 2.42401 2.60588 3.25109 3.36730 3.45402 3.53528 3.61291 3.81177 3.94336 3.99993 4.04325 4.16562 4.26879 4.30110 4.41195 4.48647 4.54867 4.60234 4.63129 4.78216 4.83381 4.84603 4.86486 4.91774 4.95642 4.98935 5.04449 5.07793 5.11144 5.12807 5.16073 5.26093 5.31647 5.40095 5.49816 5.57315 5.58492 5.73055 6.16511 6.33043 6.39375 6.78793 7.03278 7.06630 7.80569 7.97176 9.13284 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.005675 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.843187 B = 4932.707993 C = 7431.831901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.157 3.843 3 C -0.174 4.174 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.222 4.222 7 C 0.584 3.416 8 O -0.563 6.563 9 N -0.695 5.695 10 C 0.151 3.849 11 H 0.067 0.933 12 C 0.145 3.855 13 N -0.758 5.758 14 C -0.226 4.226 15 H 0.067 0.933 16 C -0.054 4.054 17 N -0.978 5.978 18 Si 0.949 3.051 19 H -0.286 1.286 20 H -0.298 1.298 21 H -0.265 1.265 22 C -0.068 4.068 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.132 4.132 26 C 0.332 3.668 27 O -0.498 6.498 28 N -0.536 5.536 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.362 0.638 40 H 0.257 0.743 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.072 0.928 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 23.554 11.251 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.019 3.981 3 C -0.193 4.193 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.229 4.229 7 C 0.369 3.631 8 O -0.443 6.443 9 N -0.343 5.343 10 C 0.046 3.954 11 H 0.086 0.914 12 C 0.019 3.981 13 N -0.404 5.404 14 C -0.357 4.357 15 H 0.085 0.915 16 C -0.246 4.246 17 N -0.629 5.629 18 Si 0.778 3.222 19 H -0.213 1.213 20 H -0.225 1.225 21 H -0.190 1.190 22 C -0.069 4.069 23 C -0.196 4.196 24 C -0.200 4.200 25 C -0.189 4.189 26 C 0.153 3.847 27 O -0.307 6.307 28 N -0.257 5.257 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.206 0.794 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.241 0.759 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.195 0.805 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -11.590 22.706 11.212 27.850 hybrid contribution -0.074 -1.139 0.630 1.304 sum -11.664 21.567 11.843 27.229 Atomic orbital electron populations 1.20933 0.85557 1.05094 1.04547 1.21950 0.98747 0.86848 0.90512 1.22218 0.92976 1.00661 1.03488 1.20618 0.94624 0.93843 0.90648 1.21139 1.00173 0.92437 1.04364 1.20897 0.94183 0.95103 1.12698 1.17866 0.86407 0.74936 0.83862 1.90771 1.70062 1.51362 1.32086 1.45939 1.07294 1.72801 1.08298 1.21291 0.79047 0.96700 0.98359 0.91447 1.21263 0.96801 0.84098 0.95960 1.42763 1.55709 1.13442 1.28437 1.19048 1.21205 0.93980 1.01465 0.91485 1.25291 1.02344 0.96937 1.00044 1.69843 1.49647 1.08353 1.35016 0.85506 0.79526 0.76547 0.80604 1.21285 1.22491 1.19047 1.20832 0.96477 0.92442 0.97191 1.21888 1.00634 1.00538 0.96565 1.21923 0.93292 1.02905 1.01864 1.21885 1.01449 1.00157 0.95380 1.19273 0.87032 0.84540 0.93838 1.84753 1.76981 1.33645 1.35339 1.67082 1.08893 1.32512 1.17202 0.88861 0.90941 0.86872 0.79419 0.88475 0.87095 0.91567 0.75934 0.93576 0.93623 0.80456 0.93416 0.92687 0.90638 0.92452 0.90372 0.93217 0.92358 0.92809 0.94304 0.90926 0.72568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.16 71.23 0.72 -0.53 16 2 C 0.16 3.19 6.78 42.58 0.29 3.48 16 3 C -0.17 -2.73 9.39 22.32 0.21 -2.52 16 4 C 0.01 0.21 5.95 -19.42 -0.12 0.10 16 5 C -0.13 -1.72 9.45 71.23 0.67 -1.05 16 6 C -0.22 -6.29 5.66 -19.91 -0.11 -6.41 16 7 C 0.58 18.35 4.27 86.69 0.37 18.72 16 8 O -0.56 -20.59 15.28 -3.99 -0.06 -20.65 16 9 N -0.69 -21.02 3.35 -445.69 -1.49 -22.52 16 10 C 0.15 4.68 1.68 44.99 0.08 4.75 16 11 H 0.07 2.46 7.34 -2.38 -0.02 2.44 16 12 C 0.14 5.37 5.03 86.38 0.43 5.81 16 13 N -0.76 -36.50 5.24 -343.47 -1.80 -38.29 16 14 C -0.23 -13.13 10.47 84.03 0.88 -12.25 16 15 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 16 C -0.05 -3.32 5.50 84.86 0.47 -2.85 16 17 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 18 Si 0.95 50.17 27.74 68.60 1.90 52.07 16 19 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 20 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 21 H -0.27 -13.33 6.52 99.48 0.65 -12.68 16 22 C -0.07 -1.56 0.63 -52.18 -0.03 -1.59 16 23 C -0.14 -2.67 8.03 71.98 0.58 -2.09 16 24 C -0.14 -3.06 7.95 71.98 0.57 -2.49 16 25 C -0.13 -2.90 7.28 71.98 0.52 -2.37 16 26 C 0.33 10.63 7.77 85.13 0.66 11.29 16 27 O -0.50 -17.63 13.01 -87.22 -1.14 -18.77 16 28 N -0.54 -15.67 10.28 -296.05 -3.04 -18.72 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.58 8.07 -2.39 -0.02 0.56 16 32 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 0.82 8.06 -2.39 -0.02 0.80 16 35 H 0.07 1.18 5.16 -2.39 -0.01 1.16 16 36 H 0.41 12.08 8.54 -92.72 -0.79 11.28 16 37 H 0.05 1.64 6.40 -2.39 -0.02 1.62 16 38 H 0.05 1.71 6.64 -2.38 -0.02 1.70 16 39 H 0.36 17.79 5.20 -92.71 -0.48 17.31 16 40 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 41 H 0.05 1.17 6.51 -2.39 -0.02 1.15 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.04 7.35 -2.39 -0.02 1.03 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.34 6.45 -2.39 -0.02 1.33 16 47 H 0.05 1.20 4.01 -2.39 -0.01 1.19 16 48 H 0.04 1.01 8.05 -2.39 -0.02 0.99 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.41 11.43 9.06 -74.06 -0.67 10.76 16 Total: -1.00 -81.15 393.84 -0.14 -81.29 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -1.01 Total: 39.45 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.20 Total: 9.99 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -6.03 Total: -143.39 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.20 Total: -39.42 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.90 Total: 52.07 kcal Total: -81.15 -0.14 -81.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278982400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.756 kcal (2) G-P(sol) polarization free energy of solvation -81.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds