Wall clock time and date at job start Tue Mar 31 2020 19:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.56413 * 2 1 4 4 C 1.53003 * 117.49460 * 214.30709 * 2 1 3 5 5 C 1.52997 * 117.49286 * 145.68976 * 2 1 3 6 6 H 1.09008 * 117.51602 * 214.96418 * 5 2 1 7 7 C 1.50697 * 117.50495 * 359.97438 * 5 2 1 8 8 O 1.21280 * 119.99705 * 0.02562 * 7 5 2 9 9 N 1.34773 * 120.00517 * 180.02562 * 7 5 2 10 10 C 1.46495 * 120.00481 * 180.02562 * 9 7 5 11 11 C 1.50702 * 109.47579 * 179.97438 * 10 9 7 12 12 C 1.29821 * 118.55320 * 94.97702 * 11 10 9 13 13 C 1.50141 * 123.28577 * 180.37613 * 12 11 10 14 14 N 1.46790 * 110.41427 * 343.08865 * 13 12 11 15 15 C 1.46904 * 111.13784 * 174.11612 * 14 13 12 16 16 C 1.50695 * 109.46993 * 170.62207 * 15 14 13 17 17 O 1.21288 * 120.00035 * 353.79354 * 16 15 14 18 18 N 1.34774 * 119.99984 * 173.79555 * 16 15 14 19 19 C 1.37098 * 120.00387 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99926 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00520 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99841 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46651 * 60.00204 * 23 21 19 25 25 H 1.48500 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47001 * 300.00372 * 23 21 19 27 27 C 1.47236 * 110.23241 * 50.61304 * 14 13 12 28 28 C 1.50304 * 118.55054 * 274.99980 * 11 10 9 29 29 H 1.08998 * 109.47407 * 274.31738 * 1 2 3 30 30 H 1.09002 * 109.46614 * 34.31148 * 1 2 3 31 31 H 1.09000 * 109.47539 * 154.30931 * 1 2 3 32 32 H 1.08997 * 109.46974 * 205.68873 * 3 2 1 33 33 H 1.09001 * 109.47233 * 325.68489 * 3 2 1 34 34 H 1.08994 * 109.47336 * 85.68758 * 3 2 1 35 35 H 1.08996 * 117.49714 * 145.02515 * 4 2 1 36 36 H 1.09001 * 117.51963 * 359.97438 * 4 2 1 37 37 H 0.97010 * 119.99867 * 359.97438 * 9 7 5 38 38 H 1.09001 * 109.47136 * 59.99408 * 10 9 7 39 39 H 1.09009 * 109.46950 * 299.99695 * 10 9 7 40 40 H 1.07998 * 118.35791 * 0.39208 * 12 11 10 41 41 H 1.09001 * 109.33508 * 103.19264 * 13 12 11 42 42 H 1.08998 * 109.33754 * 222.86306 * 13 12 11 43 43 H 1.08998 * 109.46773 * 290.61995 * 15 14 13 44 44 H 1.08996 * 109.47038 * 50.61804 * 15 14 13 45 45 H 0.96999 * 120.00107 * 359.97438 * 18 16 15 46 46 H 0.96993 * 120.00194 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.63993 * 171.69420 * 27 14 13 48 48 H 1.09006 * 109.63958 * 51.28919 * 27 14 13 49 49 H 1.08997 * 109.43471 * 43.42614 * 28 11 10 50 50 H 1.08993 * 109.42908 * 283.57042 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2363 -1.1210 0.7650 6 1 3.1716 -0.8756 1.2683 7 6 1.3719 -2.1403 1.4613 8 8 0.1637 -2.0529 1.4017 9 7 1.9413 -3.1490 2.1503 10 6 1.1010 -4.1402 2.8267 11 6 1.9766 -5.1533 3.5181 12 6 2.2566 -4.9775 4.7735 13 6 3.1239 -5.9147 5.5634 14 7 3.2562 -7.1999 4.8665 15 6 4.2117 -8.0791 5.5536 16 6 4.1492 -9.4583 4.9495 17 8 3.3078 -9.7173 4.1152 18 7 5.0281 -10.4039 5.3365 19 6 4.9710 -11.6588 4.7874 20 1 4.2213 -11.8898 4.0450 21 6 5.8775 -12.6335 5.1858 22 7 6.7894 -12.3526 6.0895 23 14 5.7991 -14.3436 4.4382 24 1 5.9948 -14.2508 2.9691 25 1 6.8666 -15.1910 5.0277 26 1 4.4733 -14.9484 4.7238 27 6 3.6534 -6.9811 3.4658 28 6 2.4876 -6.3224 2.7236 29 1 -0.3634 0.0774 1.0247 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3634 -0.9260 -0.4455 32 1 3.1824 1.3083 -0.4455 33 1 1.5813 2.0742 -0.5793 34 1 2.2773 1.7413 1.0247 35 1 3.1715 -0.8754 -1.2682 36 1 1.6114 -1.8590 -1.2680 37 1 2.9077 -3.2191 2.1977 38 1 0.4720 -4.6445 2.0932 39 1 0.4714 -3.6407 3.5632 40 1 1.8449 -4.1142 5.2750 41 1 4.1123 -5.4725 5.6888 42 1 2.6762 -6.0815 6.5431 43 1 5.2192 -7.6787 5.4414 44 1 3.9584 -8.1342 6.6122 45 1 5.7012 -10.1966 6.0034 46 1 7.4224 -13.0329 6.3675 47 1 3.8916 -7.9367 2.9990 48 1 4.5259 -6.3285 3.4300 49 1 2.8282 -5.9765 1.7477 50 1 1.6859 -7.0486 2.5907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279536259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:38 Heat of formation + Delta-G solvation = -30.473057 kcal Electronic energy + Delta-G solvation = -28184.349960 eV Core-core repulsion = 24212.407910 eV Total energy + Delta-G solvation = -3971.942050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.53607 -39.36839 -38.00061 -37.38485 -35.41975 -33.93044 -33.03085 -31.24271 -30.73718 -29.97706 -28.48175 -27.75486 -26.22706 -24.57381 -23.66030 -23.46272 -21.89037 -20.75549 -19.52748 -19.19913 -17.87828 -17.78560 -17.21229 -16.28564 -16.01230 -15.63276 -15.36692 -15.13223 -14.77319 -14.60627 -14.41167 -14.10458 -13.97512 -13.84360 -13.69902 -13.55272 -13.36730 -12.91557 -12.84841 -12.64418 -12.41780 -12.30795 -12.14601 -12.06259 -11.76650 -11.57782 -11.53934 -11.49432 -11.07322 -10.74737 -10.57341 -10.45085 -10.40880 -10.24103 -10.21815 -9.79982 -9.47023 -9.26703 -8.96198 -8.44014 -7.98399 -7.90291 -6.42276 -3.83125 1.89842 2.26521 3.08716 3.19508 3.25296 3.29601 3.42059 3.90312 3.95933 4.23528 4.26067 4.32938 4.42254 4.50181 4.72998 4.75438 4.79554 5.00060 5.17906 5.22592 5.24128 5.29633 5.32251 5.34827 5.43290 5.50109 5.51337 5.54316 5.55869 5.59480 5.67206 5.69885 5.73292 5.80905 5.86313 5.89227 5.92915 6.12409 6.21755 6.23073 6.28588 6.39888 6.40383 6.82438 7.26079 7.29734 7.34935 7.54409 8.02136 8.05639 8.61348 9.17588 9.53938 10.05871 10.75385 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.001730 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.361848 B =16179.244266 C =16500.411360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.146 4.146 5 C -0.190 4.190 6 H 0.121 0.879 7 C 0.541 3.459 8 O -0.536 6.536 9 N -0.721 5.721 10 C 0.157 3.843 11 C -0.136 4.136 12 C -0.128 4.128 13 C 0.080 3.920 14 N -0.510 5.510 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.054 3.946 28 C -0.073 4.073 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.099 0.901 48 H 0.025 0.975 49 H 0.069 0.931 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 25.211 -7.184 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.139 0.861 7 C 0.328 3.672 8 O -0.414 6.414 9 N -0.373 5.373 10 C 0.034 3.966 11 C -0.136 4.136 12 C -0.147 4.147 13 C -0.047 4.047 14 N -0.235 5.235 15 C -0.086 4.086 16 C 0.228 3.772 17 O -0.459 6.459 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.074 4.074 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.043 0.957 49 H 0.088 0.912 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.232 24.716 -7.691 26.624 hybrid contribution 1.865 -0.519 0.404 1.977 sum -4.368 24.197 -7.287 25.645 Atomic orbital electron populations 1.21353 0.90590 1.01439 1.02592 1.21594 0.96041 0.90528 1.01325 1.21401 0.99987 0.93796 1.02211 1.23225 1.02896 1.01546 0.90710 1.22371 1.01965 1.00912 0.95896 0.86080 1.19691 0.88155 0.81154 0.78250 1.90708 1.14540 1.74823 1.61288 1.46078 1.10607 1.27409 1.53175 1.20351 0.92104 0.87900 0.96222 1.21036 1.00058 0.96969 0.95566 1.22184 0.98802 0.98803 0.94946 1.20995 0.97525 0.88648 0.97571 1.61929 1.48260 1.11260 1.02017 1.21864 0.94072 0.93570 0.99106 1.19714 0.84791 0.85980 0.86697 1.90513 1.38440 1.81304 1.35683 1.41870 1.29555 1.10456 1.38270 1.19647 1.15477 0.86455 1.21302 0.87970 1.25253 0.95715 1.00200 0.96738 1.69603 1.18412 1.35522 1.30831 0.85922 0.77897 0.81313 0.79109 1.19943 1.20998 1.19896 1.22240 0.94737 1.01358 0.89014 1.20435 0.98895 0.94716 0.96974 0.91431 0.93289 0.91672 0.92258 0.91587 0.91985 0.87813 0.88200 0.76460 0.90825 0.91130 0.87136 0.93811 0.89586 0.93546 0.89201 0.77523 0.91845 0.88303 0.95682 0.91249 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 8.09 37.16 0.30 -0.63 16 2 C -0.09 -0.72 2.70 -154.51 -0.42 -1.14 16 3 C -0.12 -0.66 9.85 37.16 0.37 -0.29 16 4 C -0.15 -1.02 9.53 -26.73 -0.25 -1.28 16 5 C -0.19 -1.48 5.91 -91.78 -0.54 -2.02 16 6 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 7 C 0.54 5.64 7.59 -10.99 -0.08 5.56 16 8 O -0.54 -7.30 13.10 5.56 0.07 -7.23 16 9 N -0.72 -6.64 5.55 -61.47 -0.34 -6.98 16 10 C 0.16 1.65 5.72 -5.20 -0.03 1.62 16 11 C -0.14 -1.54 5.26 -100.93 -0.53 -2.07 16 12 C -0.13 -1.42 9.50 -35.96 -0.34 -1.76 16 13 C 0.08 0.99 5.64 -5.31 -0.03 0.96 16 14 N -0.51 -8.30 4.41 -237.61 -1.05 -9.35 16 15 C 0.05 0.79 5.43 -4.98 -0.03 0.76 16 16 C 0.44 10.26 7.24 -10.99 -0.08 10.18 16 17 O -0.58 -15.26 14.36 5.55 0.08 -15.18 16 18 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.05 0.84 5.20 -3.59 -0.02 0.83 16 28 C -0.07 -0.96 6.04 -28.03 -0.17 -1.13 16 29 H 0.07 0.71 7.26 -51.93 -0.38 0.34 16 30 H 0.05 0.36 7.92 -51.93 -0.41 -0.05 16 31 H 0.06 0.68 7.02 -51.93 -0.36 0.32 16 32 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 33 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.40 2.97 8.46 -40.82 -0.35 2.63 16 38 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.07 0.76 7.85 -51.92 -0.41 0.36 16 40 H 0.11 1.03 7.81 -52.49 -0.41 0.62 16 41 H 0.04 0.50 8.12 -51.93 -0.42 0.07 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 45 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.10 1.88 6.05 -51.93 -0.31 1.57 16 48 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -32.09 404.41 -9.94 -42.03 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.34 Total: 10.75 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.10 Total: 1.71 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.72 Total: -54.07 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.15 Total: -22.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.09 -9.94 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279536259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.556 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds