Wall clock time and date at job start Tue Mar 31 2020 19:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.56413 * 2 1 4 4 C 1.53003 * 117.49460 * 214.30709 * 2 1 3 5 5 C 1.52997 * 117.49286 * 145.68976 * 2 1 3 6 6 H 1.09008 * 117.51602 * 214.96418 * 5 2 1 7 7 C 1.50697 * 117.50495 * 359.97438 * 5 2 1 8 8 O 1.21280 * 119.99705 * 0.02562 * 7 5 2 9 9 N 1.34773 * 120.00517 * 180.02562 * 7 5 2 10 10 C 1.46495 * 120.00481 * 180.02562 * 9 7 5 11 11 C 1.50702 * 109.47579 * 179.97438 * 10 9 7 12 12 C 1.29821 * 118.55320 * 94.97702 * 11 10 9 13 13 C 1.50141 * 123.28577 * 180.37613 * 12 11 10 14 14 N 1.46790 * 110.41427 * 343.08865 * 13 12 11 15 15 C 1.46904 * 111.13784 * 174.11612 * 14 13 12 16 16 C 1.50695 * 109.46993 * 170.62207 * 15 14 13 17 17 O 1.21288 * 120.00035 * 353.79354 * 16 15 14 18 18 N 1.34774 * 119.99984 * 173.79555 * 16 15 14 19 19 C 1.37098 * 120.00387 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99926 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00520 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99841 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46651 * 60.00204 * 23 21 19 25 25 H 1.48500 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47001 * 300.00372 * 23 21 19 27 27 C 1.47236 * 110.23241 * 50.61304 * 14 13 12 28 28 C 1.50304 * 118.55054 * 274.99980 * 11 10 9 29 29 H 1.08998 * 109.47407 * 274.31738 * 1 2 3 30 30 H 1.09002 * 109.46614 * 34.31148 * 1 2 3 31 31 H 1.09000 * 109.47539 * 154.30931 * 1 2 3 32 32 H 1.08997 * 109.46974 * 205.68873 * 3 2 1 33 33 H 1.09001 * 109.47233 * 325.68489 * 3 2 1 34 34 H 1.08994 * 109.47336 * 85.68758 * 3 2 1 35 35 H 1.08996 * 117.49714 * 145.02515 * 4 2 1 36 36 H 1.09001 * 117.51963 * 359.97438 * 4 2 1 37 37 H 0.97010 * 119.99867 * 359.97438 * 9 7 5 38 38 H 1.09001 * 109.47136 * 59.99408 * 10 9 7 39 39 H 1.09009 * 109.46950 * 299.99695 * 10 9 7 40 40 H 1.07998 * 118.35791 * 0.39208 * 12 11 10 41 41 H 1.09001 * 109.33508 * 103.19264 * 13 12 11 42 42 H 1.08998 * 109.33754 * 222.86306 * 13 12 11 43 43 H 1.08998 * 109.46773 * 290.61995 * 15 14 13 44 44 H 1.08996 * 109.47038 * 50.61804 * 15 14 13 45 45 H 0.96999 * 120.00107 * 359.97438 * 18 16 15 46 46 H 0.96993 * 120.00194 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.63993 * 171.69420 * 27 14 13 48 48 H 1.09006 * 109.63958 * 51.28919 * 27 14 13 49 49 H 1.08997 * 109.43471 * 43.42614 * 28 11 10 50 50 H 1.08993 * 109.42908 * 283.57042 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2363 -1.1210 0.7650 6 1 3.1716 -0.8756 1.2683 7 6 1.3719 -2.1403 1.4613 8 8 0.1637 -2.0529 1.4017 9 7 1.9413 -3.1490 2.1503 10 6 1.1010 -4.1402 2.8267 11 6 1.9766 -5.1533 3.5181 12 6 2.2566 -4.9775 4.7735 13 6 3.1239 -5.9147 5.5634 14 7 3.2562 -7.1999 4.8665 15 6 4.2117 -8.0791 5.5536 16 6 4.1492 -9.4583 4.9495 17 8 3.3078 -9.7173 4.1152 18 7 5.0281 -10.4039 5.3365 19 6 4.9710 -11.6588 4.7874 20 1 4.2213 -11.8898 4.0450 21 6 5.8775 -12.6335 5.1858 22 7 6.7894 -12.3526 6.0895 23 14 5.7991 -14.3436 4.4382 24 1 5.9948 -14.2508 2.9691 25 1 6.8666 -15.1910 5.0277 26 1 4.4733 -14.9484 4.7238 27 6 3.6534 -6.9811 3.4658 28 6 2.4876 -6.3224 2.7236 29 1 -0.3634 0.0774 1.0247 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3634 -0.9260 -0.4455 32 1 3.1824 1.3083 -0.4455 33 1 1.5813 2.0742 -0.5793 34 1 2.2773 1.7413 1.0247 35 1 3.1715 -0.8754 -1.2682 36 1 1.6114 -1.8590 -1.2680 37 1 2.9077 -3.2191 2.1977 38 1 0.4720 -4.6445 2.0932 39 1 0.4714 -3.6407 3.5632 40 1 1.8449 -4.1142 5.2750 41 1 4.1123 -5.4725 5.6888 42 1 2.6762 -6.0815 6.5431 43 1 5.2192 -7.6787 5.4414 44 1 3.9584 -8.1342 6.6122 45 1 5.7012 -10.1966 6.0034 46 1 7.4224 -13.0329 6.3675 47 1 3.8916 -7.9367 2.9990 48 1 4.5259 -6.3285 3.4300 49 1 2.8282 -5.9765 1.7477 50 1 1.6859 -7.0486 2.5907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279536259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:37 Heat of formation + Delta-G solvation = -52.597442 kcal Electronic energy + Delta-G solvation = -28185.309345 eV Core-core repulsion = 24212.407910 eV Total energy + Delta-G solvation = -3972.901436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.30914 -40.67867 -39.42753 -38.24983 -36.49104 -35.83912 -34.10662 -33.22920 -31.81046 -30.66092 -29.61455 -28.33290 -27.56832 -26.06825 -24.74687 -24.39779 -22.99530 -21.48777 -21.00279 -20.16153 -19.86978 -18.72691 -18.10494 -17.57042 -17.17117 -16.77493 -16.52144 -16.37884 -16.17095 -15.68217 -15.52112 -15.43713 -15.12059 -14.99810 -14.64812 -14.47634 -14.17911 -14.07145 -13.95200 -13.58762 -13.47105 -13.44479 -13.34080 -12.97835 -12.93068 -12.83432 -12.71795 -12.67112 -12.42420 -12.12856 -12.12502 -11.90225 -11.60032 -11.37927 -11.16661 -10.92037 -10.53540 -10.26840 -10.09506 -9.98665 -9.88400 -9.18093 -8.45434 -5.93823 1.02470 1.39818 1.41756 1.50381 1.52329 2.07723 2.28875 2.33882 2.77066 2.80918 3.21618 3.39705 3.57095 3.66666 3.75808 3.79441 3.86432 4.15542 4.17996 4.20345 4.27208 4.31567 4.36344 4.46850 4.52309 4.59616 4.62849 4.67235 4.69112 4.78400 4.82833 4.84887 4.90424 4.99182 5.00956 5.07830 5.09821 5.11803 5.20853 5.30116 5.38588 5.41443 5.42966 5.54982 5.84840 5.96861 6.09310 6.24939 6.56271 6.62595 7.14627 7.25848 7.58607 8.14866 8.71678 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.001730 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.361848 B =16179.244266 C =16500.411360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.102 4.102 3 C -0.113 4.113 4 C -0.139 4.139 5 C -0.192 4.192 6 H 0.147 0.853 7 C 0.535 3.465 8 O -0.575 6.575 9 N -0.711 5.711 10 C 0.167 3.833 11 C -0.138 4.138 12 C -0.119 4.119 13 C 0.078 3.922 14 N -0.534 5.534 15 C 0.058 3.942 16 C 0.440 3.560 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.057 3.943 28 C -0.067 4.067 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.055 0.945 48 H 0.045 0.955 49 H 0.084 0.916 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 27.101 -6.734 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 C -0.170 4.170 4 C -0.176 4.176 5 C -0.213 4.213 6 H 0.164 0.836 7 C 0.323 3.677 8 O -0.455 6.455 9 N -0.363 5.363 10 C 0.043 3.957 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.048 4.048 14 N -0.260 5.260 15 C -0.073 4.073 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.104 4.104 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.249 0.751 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.778 26.624 -7.221 27.997 hybrid contribution 1.369 -1.088 0.262 1.768 sum -3.409 25.536 -6.958 26.686 Atomic orbital electron populations 1.21257 0.92200 1.00849 1.01275 1.21694 0.95045 0.91874 1.01687 1.21399 1.00617 0.92329 1.02609 1.23288 1.03515 1.00656 0.90134 1.22437 1.02352 1.00162 0.96317 0.83581 1.20225 0.88005 0.81546 0.77951 1.90700 1.16343 1.75798 1.62651 1.45993 1.11088 1.26689 1.52529 1.20142 0.91917 0.87817 0.95789 1.20835 1.00779 0.96517 0.95726 1.22344 0.97945 0.99063 0.94519 1.21135 0.99046 0.86913 0.97747 1.61889 1.48178 1.13436 1.02463 1.21725 0.95842 0.90119 0.99622 1.20790 0.83149 0.87748 0.85529 1.90488 1.39755 1.82513 1.37272 1.41931 1.30353 1.10272 1.38684 1.19603 1.16069 0.88357 1.22194 0.90438 1.25997 0.94977 1.03325 0.96883 1.69662 1.18570 1.36687 1.31181 0.85017 0.78092 0.77043 0.78354 1.19765 1.19475 1.19888 1.22121 0.96367 0.99644 0.88930 1.20315 0.97310 0.94795 0.97969 0.93424 0.91906 0.93853 0.90726 0.91138 0.91816 0.85357 0.89619 0.75104 0.92384 0.91128 0.84602 0.91713 0.88342 0.91326 0.86988 0.77033 0.91348 0.92635 0.93714 0.89730 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 8.09 71.98 0.58 -1.22 16 2 C -0.10 -1.41 2.70 -52.18 -0.14 -1.55 16 3 C -0.11 -0.98 9.85 71.98 0.71 -0.27 16 4 C -0.14 -1.69 9.53 30.59 0.29 -1.40 16 5 C -0.19 -2.62 5.91 -11.54 -0.07 -2.69 16 6 H 0.15 1.25 8.14 -2.38 -0.02 1.23 16 7 C 0.53 10.76 7.59 87.66 0.67 11.42 16 8 O -0.57 -15.95 13.10 -3.03 -0.04 -15.99 16 9 N -0.71 -12.08 5.55 -466.79 -2.59 -14.67 16 10 C 0.17 3.36 5.72 85.63 0.49 3.85 16 11 C -0.14 -2.92 5.26 -15.40 -0.08 -3.00 16 12 C -0.12 -2.31 9.50 26.69 0.25 -2.05 16 13 C 0.08 1.69 5.64 85.40 0.48 2.17 16 14 N -0.53 -16.71 4.41 -905.65 -3.99 -20.71 16 15 C 0.06 1.94 5.43 85.55 0.46 2.41 16 16 C 0.44 20.76 7.24 87.66 0.63 21.40 16 17 O -0.61 -33.86 14.36 -3.05 -0.04 -33.90 16 18 N -0.57 -29.25 5.29 -307.00 -1.62 -30.87 16 19 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 22 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 23 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.06 1.76 5.20 86.27 0.45 2.21 16 28 C -0.07 -1.74 6.04 29.75 0.18 -1.56 16 29 H 0.05 1.04 7.26 -2.39 -0.02 1.02 16 30 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 31 H 0.04 0.96 7.02 -2.39 -0.02 0.94 16 32 H 0.07 0.44 7.90 -2.39 -0.02 0.42 16 33 H 0.07 0.56 7.92 -2.39 -0.02 0.54 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 0.94 8.05 -2.39 -0.02 0.92 16 36 H 0.09 1.30 8.05 -2.39 -0.02 1.28 16 37 H 0.41 5.14 8.46 -92.70 -0.78 4.35 16 38 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 39 H 0.07 1.45 7.85 -2.38 -0.02 1.43 16 40 H 0.14 2.01 7.81 -2.91 -0.02 1.98 16 41 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.01 8.12 -2.39 -0.02 2.00 16 44 H 0.11 3.27 8.09 -2.39 -0.02 3.26 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.06 2.20 6.05 -2.39 -0.01 2.18 16 48 H 0.04 1.18 8.09 -2.38 -0.02 1.16 16 49 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.26 404.41 -0.36 -72.61 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.57 Total: 36.13 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.19 Total: 11.51 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -7.92 Total: -115.30 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.08 Total: -49.90 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.26 -0.36 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279536259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.013 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds