Wall clock time and date at job start Tue Mar 31 2020 19:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.45781 * 2 1 4 4 C 1.46891 * 111.00068 * 59.99990 * 3 2 1 5 5 C 1.50701 * 109.47023 * 180.02562 * 4 3 2 6 6 O 1.21294 * 120.00165 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00046 * 179.97438 * 5 4 3 8 8 C 1.37093 * 120.00186 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.38951 * 120.00075 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99999 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47125 * 89.99702 * 12 10 8 14 14 H 1.48497 * 109.47322 * 209.99548 * 12 10 8 15 15 H 1.48501 * 109.47552 * 329.99943 * 12 10 8 16 16 C 1.53038 * 109.46226 * 119.97121 * 2 1 3 17 17 C 1.53198 * 109.31455 * 58.62952 * 16 2 1 18 18 N 1.46920 * 108.76201 * 54.65705 * 17 16 2 19 19 C 1.34775 * 120.63098 * 126.41070 * 18 17 16 20 20 O 1.21616 * 120.00057 * 173.65926 * 19 18 17 21 21 C 1.47103 * 119.99911 * 353.65510 * 19 18 17 22 22 C 1.32609 * 124.61785 * 204.53613 * 21 19 18 23 23 C 1.51117 * 110.75542 * 180.02562 * 22 21 19 24 24 C 1.54574 * 104.84037 * 16.59821 * 23 22 21 25 25 C 1.51112 * 124.61932 * 24.23724 * 21 19 18 26 26 C 1.46933 * 118.73883 * 306.38172 * 18 17 16 27 27 C 1.53037 * 109.46207 * 240.02519 * 2 1 3 28 28 H 1.08997 * 109.47285 * 60.00288 * 1 2 3 29 29 H 1.09005 * 109.46623 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47147 * 299.99808 * 1 2 3 31 31 H 1.00898 * 110.99800 * 296.04234 * 3 2 1 32 32 H 1.08999 * 109.47509 * 299.99957 * 4 3 2 33 33 H 1.09003 * 109.47613 * 60.00306 * 4 3 2 34 34 H 0.97001 * 119.99899 * 0.02562 * 7 5 4 35 35 H 0.97006 * 119.99507 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49847 * 178.59392 * 16 2 1 37 37 H 1.09004 * 109.50041 * 298.69244 * 16 2 1 38 38 H 1.08997 * 109.59238 * 294.87060 * 17 16 2 39 39 H 1.09000 * 109.70321 * 174.51103 * 17 16 2 40 40 H 1.08005 * 124.62528 * 0.02562 * 22 21 19 41 41 H 1.08997 * 110.36355 * 135.43729 * 23 22 21 42 42 H 1.09002 * 110.36156 * 257.75646 * 23 22 21 43 43 H 1.08997 * 110.98387 * 93.07487 * 24 23 22 44 44 H 1.09003 * 110.98535 * 216.87539 * 24 23 22 45 45 H 1.09005 * 110.36392 * 282.23877 * 25 21 19 46 46 H 1.08999 * 110.36407 * 44.55745 * 25 21 19 47 47 H 1.08995 * 109.58743 * 293.82602 * 26 18 17 48 48 H 1.09006 * 109.70182 * 173.46670 * 26 18 17 49 49 H 1.09002 * 109.49846 * 61.30572 * 27 2 1 50 50 H 1.09000 * 109.49825 * 181.37259 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0193 1.3851 0.0000 4 6 1.5482 2.1099 1.1876 5 6 2.0684 3.5238 1.1524 6 8 2.7638 3.8914 0.2291 7 7 1.7611 4.3799 2.1470 8 6 2.2348 5.6660 2.1153 9 1 2.8540 5.9933 1.2931 10 6 1.9184 6.5484 3.1409 11 7 1.1647 6.1503 4.1411 12 14 2.5634 8.3010 3.0973 13 1 1.5907 9.1688 2.3858 14 1 2.7454 8.7962 4.4854 15 1 3.8665 8.3315 2.3859 16 6 2.0399 -0.7208 1.2500 17 6 1.4991 -2.1541 1.2644 18 7 1.8621 -2.8089 0.0003 19 6 2.5150 -3.9880 0.0004 20 8 2.7081 -4.5762 -1.0463 21 6 2.9940 -4.5633 1.2667 22 6 4.0021 -5.4185 1.3720 23 6 4.2264 -5.8068 2.8151 24 6 2.9299 -5.3865 3.5443 25 6 2.4086 -4.2554 2.6254 26 6 1.4993 -2.1542 -1.2641 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7498 1.8638 -0.8463 32 1 0.4583 2.1243 1.1959 33 1 1.9118 1.6109 2.0859 34 1 1.2054 4.0858 2.8856 35 1 0.9435 6.7665 4.8569 36 1 3.1296 -0.7431 1.2381 37 1 1.6960 -0.1935 2.1398 38 1 0.4142 -2.1344 1.3674 39 1 1.9354 -2.7031 2.0989 40 1 4.5835 -5.7872 0.5398 41 1 4.3770 -6.8830 2.8992 42 1 5.0826 -5.2699 3.2236 43 1 2.2226 -6.2144 3.5914 44 1 3.1491 -5.0051 4.5416 45 1 2.7576 -3.2847 2.9776 46 1 1.3196 -4.2753 2.5825 47 1 0.4144 -2.1346 -1.3673 48 1 1.9361 -2.7012 -2.0997 49 1 1.6959 -0.1937 -2.1398 50 1 3.1296 -0.7426 -1.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281488414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:28 Heat of formation + Delta-G solvation = -30.149838 kcal Electronic energy + Delta-G solvation = -29517.431901 eV Core-core repulsion = 25545.503867 eV Total energy + Delta-G solvation = -3971.928035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96479 -39.21821 -38.13736 -37.69357 -35.35815 -33.90679 -32.11824 -31.27571 -31.01589 -29.71891 -28.83784 -27.75801 -26.77106 -24.77497 -24.02348 -23.24248 -21.55849 -21.19592 -19.26126 -19.08492 -18.19040 -17.88967 -16.94873 -16.61200 -16.19837 -16.00899 -15.33736 -15.25105 -14.92295 -14.67689 -14.61649 -14.20345 -14.00042 -13.88199 -13.49492 -13.34146 -13.14379 -12.93176 -12.53886 -12.42714 -12.27183 -12.13955 -11.99339 -11.96501 -11.81098 -11.61498 -11.55470 -11.38862 -11.21501 -11.16932 -11.02364 -10.58674 -10.40275 -10.31189 -10.21984 -9.91268 -9.51683 -9.31876 -8.76052 -8.45667 -8.03229 -7.95943 -6.42806 -3.83397 1.15884 2.76210 3.00876 3.16942 3.25658 3.31790 3.90170 4.02123 4.06977 4.16588 4.27736 4.42267 4.56220 4.58330 4.73684 4.86936 4.91500 4.96974 5.12045 5.13498 5.14698 5.18838 5.22972 5.26306 5.31026 5.35877 5.42850 5.46072 5.51161 5.57040 5.64834 5.67120 5.73683 5.75546 5.82127 5.84380 5.96635 6.01110 6.02942 6.14481 6.20260 6.26967 6.32739 6.39756 7.23045 7.26125 7.54360 7.67407 7.99277 8.05771 8.60662 9.17305 9.53660 10.05392 10.75014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.002309 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.348456 B =12124.000720 C =13063.059260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.115 3.885 3 N -0.657 5.657 4 C 0.047 3.953 5 C 0.441 3.559 6 O -0.583 6.583 7 N -0.565 5.565 8 C -0.298 4.298 9 H 0.103 0.897 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 0.929 3.071 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.124 4.124 17 C 0.061 3.939 18 N -0.600 5.600 19 C 0.568 3.432 20 O -0.547 6.547 21 C -0.192 4.192 22 C -0.076 4.076 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.095 4.095 26 C 0.113 3.887 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.350 0.650 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -23.602 -0.176 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.023 3.977 3 N -0.289 5.289 4 C -0.086 4.086 5 C 0.226 3.774 6 O -0.467 6.467 7 N -0.201 5.201 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.544 5.544 12 Si 0.757 3.243 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.162 4.162 17 C -0.061 4.061 18 N -0.332 5.332 19 C 0.358 3.642 20 O -0.426 6.426 21 C -0.195 4.195 22 C -0.096 4.096 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.131 4.131 26 C -0.010 4.010 27 C -0.158 4.158 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.415 -23.669 -0.911 23.690 hybrid contribution -1.133 1.135 0.271 1.627 sum -1.548 -22.533 -0.640 22.596 Atomic orbital electron populations 1.22708 0.97365 1.02260 1.02473 1.20861 0.91909 0.89658 0.95282 1.60245 1.62929 1.00585 1.05126 1.21749 0.97675 0.94252 0.94911 1.19857 0.85914 0.86618 0.84998 1.90526 1.41739 1.78205 1.36250 1.41861 1.46154 1.10883 1.21242 1.19698 1.29064 0.86267 1.07770 0.87964 1.25253 0.97005 1.00391 0.95311 1.69612 1.37177 1.36799 1.10830 0.85865 0.79355 0.81766 0.77359 1.20435 1.20916 1.19405 1.22006 1.02141 0.94079 0.97980 1.23041 1.00876 0.94533 0.87674 1.47938 1.56849 1.20804 1.07625 1.18026 0.77289 0.80432 0.88462 1.90779 1.57965 1.60624 1.33258 1.21772 1.01381 1.02230 0.94144 1.24005 0.94692 0.92780 0.98125 1.21486 0.98921 1.02033 0.91992 1.22544 0.96828 0.98257 0.98740 1.21631 1.01058 0.99015 0.91427 1.21653 0.99932 0.92847 0.86522 1.21905 1.02215 0.94130 0.97558 0.92450 0.91963 0.91908 0.83031 0.93595 0.89526 0.77518 0.91897 0.90497 0.90305 0.91244 0.85774 0.84625 0.90196 0.89502 0.90714 0.90252 0.88656 0.90258 0.91336 0.89002 0.90589 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 7.47 37.16 0.28 -1.69 16 2 C 0.11 1.34 0.71 -131.56 -0.09 1.25 16 3 N -0.66 -10.24 5.71 -101.19 -0.58 -10.82 16 4 C 0.05 0.79 5.38 -4.98 -0.03 0.76 16 5 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 6 O -0.58 -15.80 15.78 5.55 0.09 -15.72 16 7 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 8 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 9 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 10 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 11 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 12 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 C -0.12 -1.32 4.71 -26.61 -0.13 -1.44 16 17 C 0.06 0.53 5.31 -3.71 -0.02 0.51 16 18 N -0.60 -6.41 2.97 -174.16 -0.52 -6.93 16 19 C 0.57 6.98 7.60 -12.66 -0.10 6.88 16 20 O -0.55 -8.57 16.34 5.26 0.09 -8.49 16 21 C -0.19 -1.82 5.83 -102.73 -0.60 -2.42 16 22 C -0.08 -0.64 10.51 -36.01 -0.38 -1.02 16 23 C -0.11 -0.61 6.80 -26.85 -0.18 -0.80 16 24 C -0.13 -0.66 7.17 -24.97 -0.18 -0.84 16 25 C -0.10 -0.62 4.45 -26.75 -0.12 -0.74 16 26 C 0.11 1.20 5.94 -3.71 -0.02 1.18 16 27 C -0.12 -1.34 5.16 -26.61 -0.14 -1.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 30 H 0.06 0.68 6.40 -51.93 -0.33 0.34 16 31 H 0.35 5.75 8.42 -39.29 -0.33 5.42 16 32 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 33 H 0.09 1.35 6.27 -51.93 -0.33 1.03 16 34 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.82 6.33 -51.93 -0.33 0.49 16 38 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 39 H 0.13 0.89 2.04 -71.95 -0.15 0.75 16 40 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.56 6.47 -51.93 -0.34 0.23 16 46 H 0.08 0.47 7.49 -51.93 -0.39 0.08 16 47 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 48 H 0.09 1.07 7.06 -51.93 -0.37 0.71 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -33.38 381.78 -9.03 -42.41 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.48 Total: 13.29 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.03 Total: 2.40 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.43 Total: -55.61 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.38 -9.03 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281488414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.258 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds