Wall clock time and date at job start Tue Mar 31 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35430 * 117.00254 * 2 1 4 4 N 1.32241 * 119.79785 * 0.29155 * 3 2 1 5 5 C 1.31881 * 121.79819 * 180.28861 * 4 3 2 6 6 C 1.50703 * 119.40692 * 179.68007 * 5 4 3 7 7 C 1.38352 * 121.18567 * 359.70470 * 5 4 3 8 8 C 1.38342 * 119.45854 * 359.97438 * 7 5 4 9 9 C 1.39985 * 118.34955 * 359.97438 * 8 7 5 10 10 C 1.47523 * 120.59728 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00036 * 179.72321 * 10 9 8 12 12 N 1.34779 * 120.00169 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00290 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46859 * 179.97438 * 13 12 10 15 15 C 1.53009 * 109.46634 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.46703 * 180.02562 * 15 14 13 17 17 C 1.36933 * 120.00075 * 269.99715 * 16 15 14 18 18 H 1.08004 * 120.00036 * 144.86269 * 17 16 15 19 19 C 1.38813 * 120.00540 * 324.86393 * 17 16 15 20 20 N 1.31609 * 120.00435 * 157.16105 * 19 17 16 21 21 Si 1.86798 * 119.99480 * 337.16721 * 19 17 16 22 22 H 1.48502 * 109.47315 * 95.35332 * 21 19 17 23 23 H 1.48500 * 109.47004 * 215.35200 * 21 19 17 24 24 H 1.48507 * 109.47279 * 335.35109 * 21 19 17 25 25 C 1.46501 * 119.99973 * 90.00417 * 16 15 14 26 26 C 1.52999 * 109.47450 * 121.89414 * 25 16 15 27 27 C 1.53003 * 109.47252 * 241.89849 * 25 16 15 28 28 H 1.08995 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46756 * 299.99797 * 1 2 3 30 30 H 1.08995 * 109.46861 * 59.99560 * 1 2 3 31 31 H 1.09000 * 109.46711 * 270.02450 * 6 5 4 32 32 H 1.08999 * 109.46635 * 30.02092 * 6 5 4 33 33 H 1.09001 * 109.46916 * 150.02464 * 6 5 4 34 34 H 1.08003 * 120.27389 * 179.97438 * 7 5 4 35 35 H 1.08003 * 120.82387 * 179.97438 * 8 7 5 36 36 H 0.97002 * 119.99729 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.46943 * 300.00484 * 13 12 10 38 38 H 1.09003 * 109.46492 * 60.00146 * 13 12 10 39 39 H 1.08991 * 109.47389 * 299.99775 * 14 13 12 40 40 H 1.08992 * 109.47007 * 60.00626 * 14 13 12 41 41 H 1.08997 * 109.46960 * 300.00358 * 15 14 13 42 42 H 1.08996 * 109.47052 * 60.00008 * 15 14 13 43 43 H 0.97001 * 120.00596 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.47053 * 1.89367 * 25 16 15 45 45 H 1.08999 * 109.47041 * 65.32908 * 26 25 16 46 46 H 1.08994 * 109.47401 * 185.32604 * 26 25 16 47 47 H 1.08992 * 109.47250 * 305.32978 * 26 25 16 48 48 H 1.08998 * 109.46852 * 55.18020 * 27 25 16 49 49 H 1.08992 * 109.47395 * 175.18957 * 27 25 16 50 50 H 1.09002 * 109.46496 * 295.18741 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3132 0.0058 5 6 1.8772 3.5084 0.0004 6 6 1.0001 4.7339 0.0002 7 6 3.2527 3.6575 -0.0056 8 6 4.0588 2.5332 -0.0054 9 6 3.4450 1.2751 0.0015 10 6 4.2570 0.0435 0.0026 11 8 3.7126 -1.0436 0.0137 12 7 5.6024 0.1233 -0.0036 13 6 6.4088 -1.0998 -0.0019 14 6 7.8938 -0.7316 -0.0105 15 6 8.7360 -2.0090 -0.0094 16 7 10.1579 -1.6564 -0.0171 17 6 10.8172 -1.4962 -1.2065 18 1 11.5922 -0.7496 -1.2980 19 6 10.4894 -2.2932 -2.2947 20 7 10.7596 -1.8833 -3.5158 21 14 9.6647 -3.9476 -2.0259 22 1 8.1933 -3.7941 -2.1552 23 1 10.1526 -4.9148 -3.0416 24 1 9.9926 -4.4492 -0.6671 25 6 10.8745 -1.4754 1.2478 26 6 12.0577 -2.4436 1.3068 27 6 11.3873 -0.0370 1.3421 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7845 5.0262 -1.0275 32 1 0.0670 4.5129 0.5185 33 1 1.5144 5.5489 0.5095 34 1 3.6935 4.6434 -0.0104 35 1 5.1350 2.6240 -0.0104 36 1 6.0368 0.9906 -0.0083 37 1 6.1836 -1.6822 0.8915 38 1 6.1759 -1.6897 -0.8885 39 1 8.1186 -0.1494 -0.9041 40 1 8.1270 -0.1415 0.8757 41 1 8.5112 -2.5916 0.8839 42 1 8.5027 -2.5987 -0.8959 43 1 10.5309 -2.4404 -4.2763 44 1 10.1993 -1.6757 2.0798 45 1 12.7793 -2.1831 0.5326 46 1 12.5340 -2.3762 2.2848 47 1 11.7028 -3.4614 1.1449 48 1 10.5546 0.6547 1.2144 49 1 11.8455 0.1221 2.3182 50 1 12.1272 0.1369 0.5608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317705836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:49 Heat of formation + Delta-G solvation = -42.561135 kcal Electronic energy + Delta-G solvation = -28927.326779 eV Core-core repulsion = 24954.860550 eV Total energy + Delta-G solvation = -3972.466229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.03194 -40.29823 -39.11632 -38.76214 -36.40576 -34.53361 -34.23220 -33.25823 -32.77946 -30.94687 -29.43014 -28.09657 -27.75939 -26.84206 -25.16578 -24.01842 -23.91175 -22.73053 -21.70100 -21.14987 -19.42275 -18.63984 -18.42163 -17.93187 -17.35434 -17.19587 -16.71817 -16.48242 -16.30537 -15.58433 -15.45126 -15.40995 -15.15528 -15.03579 -14.85722 -14.74807 -14.11640 -14.06556 -13.96855 -13.56603 -13.51905 -13.36236 -13.26634 -13.03856 -12.88319 -12.72221 -12.64660 -12.57731 -12.33828 -12.15473 -12.06522 -11.99180 -11.67914 -11.39556 -11.26336 -11.17763 -11.00365 -10.70159 -10.54039 -10.17867 -9.50289 -8.73569 -8.14161 -5.46639 -0.41788 0.19269 1.30890 1.41616 1.50068 1.78848 1.99867 2.08565 2.44866 2.71109 3.06447 3.11658 3.35981 3.65149 3.69619 3.86688 4.06398 4.14032 4.20240 4.31397 4.33387 4.34612 4.35241 4.40361 4.52287 4.60363 4.64621 4.69405 4.72839 4.76186 4.80384 4.83865 4.92045 4.97807 4.98496 5.10681 5.14215 5.17474 5.22166 5.26600 5.34174 5.43826 5.46164 5.59943 5.67067 6.02169 6.16000 6.27472 6.47752 6.71493 7.06745 7.17595 7.73625 8.13584 9.05954 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.002497 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.549545 B =11212.245186 C =11881.006680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.303 6.303 3 C 0.354 3.646 4 N -0.559 5.559 5 C 0.184 3.816 6 C -0.106 4.106 7 C -0.209 4.209 8 C 0.001 3.999 9 C -0.242 4.242 10 C 0.558 3.442 11 O -0.568 6.568 12 N -0.711 5.711 13 C 0.129 3.871 14 C -0.125 4.125 15 C 0.132 3.868 16 N -0.611 5.611 17 C -0.226 4.226 18 H 0.051 0.949 19 C -0.022 4.022 20 N -0.951 5.951 21 Si 0.928 3.072 22 H -0.284 1.284 23 H -0.319 1.319 24 H -0.258 1.258 25 C 0.156 3.844 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.258 0.742 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 15.163 12.401 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.208 6.208 3 C 0.174 3.826 4 N -0.285 5.285 5 C 0.047 3.953 6 C -0.162 4.162 7 C -0.228 4.228 8 C -0.025 4.025 9 C -0.249 4.249 10 C 0.346 3.654 11 O -0.448 6.448 12 N -0.364 5.364 13 C 0.005 3.995 14 C -0.165 4.165 15 C 0.007 3.993 16 N -0.334 5.334 17 C -0.356 4.356 18 H 0.068 0.932 19 C -0.217 4.217 20 N -0.596 5.596 21 Si 0.759 3.241 22 H -0.212 1.212 23 H -0.248 1.248 24 H -0.182 1.182 25 C 0.051 3.949 26 C -0.207 4.207 27 C -0.203 4.203 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.202 0.798 35 H 0.190 0.810 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.063 13.950 12.298 26.632 hybrid contribution 0.619 -0.906 -0.869 1.400 sum -18.444 13.044 11.429 25.317 Atomic orbital electron populations 1.23106 0.76054 1.04383 1.02603 1.86507 1.24126 1.24200 1.85942 1.20057 0.88595 0.85290 0.88641 1.67346 1.40469 0.98612 1.22092 1.21984 0.93632 0.92127 0.87605 1.20960 0.98919 0.91683 1.04681 1.22202 0.93223 1.01220 1.06161 1.22026 1.02261 0.89382 0.88816 1.19997 0.91378 0.95311 1.18173 1.18211 0.82419 0.88644 0.76173 1.90788 1.72551 1.30359 1.51129 1.45779 1.05129 1.10624 1.74856 1.21230 0.90502 0.86666 1.01139 1.22128 0.91221 1.00262 1.02898 1.21166 0.83882 0.95002 0.99279 1.44408 1.04327 1.82451 1.02239 1.18527 1.17294 1.12266 0.87504 0.93164 1.25875 1.00373 1.00317 0.95137 1.69971 1.53124 1.38109 0.98429 0.86117 0.77528 0.83064 0.77377 1.21165 1.24826 1.18238 1.20710 0.93103 0.94186 0.86910 1.22076 0.98940 0.98845 1.00825 1.22046 1.00502 0.97091 1.00631 0.87027 0.91690 0.91949 0.88530 0.90447 0.87241 0.79815 0.80956 0.74972 0.91183 0.94161 0.92686 0.89506 0.91545 0.95565 0.93321 0.90296 0.94616 0.90784 0.94884 0.93200 0.90993 0.95139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.38 113.37 1.18 1.87 16 2 O -0.30 -9.27 8.58 -66.44 -0.57 -9.84 16 3 C 0.35 9.87 7.51 85.13 0.64 10.51 16 4 N -0.56 -12.64 9.11 -296.05 -2.70 -15.34 16 5 C 0.18 2.87 6.78 42.58 0.29 3.16 16 6 C -0.11 -0.78 10.16 71.24 0.72 -0.05 16 7 C -0.21 -2.62 9.71 22.32 0.22 -2.41 16 8 C 0.00 0.01 9.64 22.72 0.22 0.23 16 9 C -0.24 -6.35 5.90 -19.91 -0.12 -6.47 16 10 C 0.56 17.90 7.77 86.69 0.67 18.57 16 11 O -0.57 -23.21 15.19 16.83 0.26 -22.96 16 12 N -0.71 -19.52 5.51 -466.28 -2.57 -22.08 16 13 C 0.13 4.12 5.67 86.38 0.49 4.61 16 14 C -0.12 -4.11 5.65 30.60 0.17 -3.93 16 15 C 0.13 5.23 4.49 86.38 0.39 5.62 16 16 N -0.61 -26.41 2.06 -678.03 -1.40 -27.81 16 17 C -0.23 -12.04 8.74 84.03 0.73 -11.31 16 18 H 0.05 2.97 7.17 -2.91 -0.02 2.95 16 19 C -0.02 -1.24 5.31 84.86 0.45 -0.79 16 20 N -0.95 -59.06 13.97 21.65 0.30 -58.76 16 21 Si 0.93 46.89 24.97 68.60 1.71 48.60 16 22 H -0.28 -14.07 6.66 99.48 0.66 -13.41 16 23 H -0.32 -16.69 7.11 99.48 0.71 -15.98 16 24 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.16 5.44 3.36 44.99 0.15 5.59 16 26 C -0.15 -5.14 9.04 71.98 0.65 -4.49 16 27 C -0.14 -4.52 9.11 71.98 0.66 -3.87 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 0.23 8.07 -2.39 -0.02 0.21 16 34 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 35 H 0.17 1.82 6.52 -2.91 -0.02 1.80 16 36 H 0.41 8.41 6.57 -92.71 -0.61 7.80 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.07 2.29 7.90 -2.39 -0.02 2.27 16 42 H 0.03 1.21 2.98 -2.39 -0.01 1.20 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.08 2.34 7.78 -2.39 -0.02 2.32 16 45 H 0.03 1.39 7.80 -2.39 -0.02 1.37 16 46 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 49 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.03 1.10 7.25 -2.39 -0.02 1.08 16 Total: -1.00 -78.85 403.67 2.83 -76.02 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.28 Total: 15.33 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 7.51 Total: 16.84 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.36 Total: -123.99 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.31 Total: -32.80 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.71 Total: 48.60 kcal Total: -78.85 2.83 -76.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317705836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.455 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds