Wall clock time and date at job start Tue Mar 31 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 112.90674 * 2 1 4 4 C 1.53776 * 113.61630 * 131.25355 * 2 1 3 5 5 C 1.53784 * 87.17253 * 89.15395 * 4 2 1 6 6 C 1.53780 * 87.07792 * 25.39300 * 5 4 2 7 7 H 1.09005 * 113.61748 * 89.11364 * 6 5 4 8 8 C 1.50703 * 113.61063 * 219.93173 * 6 5 4 9 9 O 1.21280 * 120.00024 * 121.68220 * 8 6 5 10 10 N 1.34771 * 120.00194 * 301.67298 * 8 6 5 11 11 C 1.47869 * 126.92406 * 359.68810 * 10 8 6 12 12 C 1.56009 * 105.11978 * 181.84082 * 11 10 8 13 13 H 1.09000 * 116.82735 * 159.42306 * 12 11 10 14 14 C 1.57082 * 99.47948 * 33.13626 * 12 11 10 15 15 C 1.49278 * 126.93013 * 180.02562 * 10 8 6 16 16 H 1.09004 * 116.12741 * 16.83376 * 15 10 8 17 17 C 1.56011 * 104.12794 * 246.86975 * 15 10 8 18 18 N 1.48283 * 105.07112 * 288.79499 * 17 15 10 19 19 C 1.46906 * 111.00298 * 122.54418 * 18 17 15 20 20 C 1.50697 * 109.46907 * 78.58768 * 19 18 17 21 21 O 1.21294 * 120.00247 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99671 * 180.02562 * 20 19 18 23 23 C 1.37104 * 120.00024 * 179.97438 * 22 20 19 24 24 H 1.07995 * 119.99737 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00089 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99832 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00060 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47037 * 90.00210 * 27 25 23 29 29 H 1.48499 * 109.47212 * 210.00187 * 27 25 23 30 30 H 1.48498 * 109.47175 * 330.00200 * 27 25 23 31 31 H 1.08996 * 109.46721 * 283.40178 * 1 2 3 32 32 H 1.08997 * 109.46853 * 43.40355 * 1 2 3 33 33 H 1.08995 * 109.46980 * 163.40055 * 1 2 3 34 34 H 1.08994 * 109.46982 * 171.75029 * 3 2 1 35 35 H 1.09005 * 109.47042 * 291.74995 * 3 2 1 36 36 H 1.09001 * 109.46659 * 51.74724 * 3 2 1 37 37 H 1.09006 * 113.61513 * 334.56945 * 4 2 1 38 38 H 1.08994 * 113.61549 * 203.75139 * 4 2 1 39 39 H 1.09010 * 113.61029 * 139.93687 * 5 4 2 40 40 H 1.08994 * 113.61641 * 270.75567 * 5 4 2 41 41 H 1.09000 * 110.31350 * 300.86038 * 11 10 8 42 42 H 1.08995 * 110.31831 * 63.05019 * 11 10 8 43 43 H 1.09005 * 112.35813 * 191.56688 * 14 12 11 44 44 H 1.08999 * 112.43953 * 64.16929 * 14 12 11 45 45 H 1.09000 * 110.32259 * 47.69550 * 17 15 10 46 46 H 1.09004 * 110.32354 * 169.89456 * 17 15 10 47 47 H 1.08998 * 109.46868 * 198.58573 * 19 18 17 48 48 H 1.08999 * 109.46224 * 318.58857 * 19 18 17 49 49 H 0.96999 * 120.00784 * 359.97438 * 22 20 19 50 50 H 0.97007 * 119.99780 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 6 2.0950 -2.0438 0.0011 6 6 2.1467 -0.9314 -1.0594 7 1 3.1595 -0.6510 -1.3490 8 6 1.2482 -1.1834 -2.2427 9 8 0.3841 -0.3821 -2.5295 10 7 1.4049 -2.2990 -2.9824 11 6 2.4055 -3.3681 -2.7766 12 6 2.1653 -4.3797 -3.9397 13 1 2.9886 -5.0500 -4.1865 14 6 1.7141 -3.3793 -5.0636 15 6 0.6078 -2.7012 -4.1788 16 1 0.0221 -1.9133 -4.6524 17 6 -0.1679 -3.9711 -3.7102 18 7 0.8616 -5.0324 -3.5985 19 6 0.8933 -5.5945 -2.2417 20 6 -0.2458 -6.5667 -2.0740 21 8 -1.0093 -6.7709 -2.9941 22 7 -0.4168 -7.2085 -0.9013 23 6 -1.4535 -8.0927 -0.7485 24 1 -2.1333 -8.2745 -1.5677 25 6 -1.6295 -8.7547 0.4603 26 7 -2.6235 -9.6018 0.6069 27 14 -0.4533 -8.4408 1.8771 28 1 -0.9623 -7.3167 2.7032 29 1 -0.3494 -9.6629 2.7143 30 1 0.8869 -8.0933 1.3401 31 1 -0.3632 0.2382 0.9997 32 1 -0.3633 0.7466 -0.7061 33 1 -0.3633 -0.9848 -0.2936 34 1 3.2038 1.3482 0.1474 35 1 1.9162 1.8923 -0.9546 36 1 1.6809 1.9916 0.8070 37 1 1.4946 -1.1087 1.9145 38 1 3.1586 -0.6490 1.3500 39 1 2.9748 -2.6875 0.0021 40 1 1.1603 -2.6046 0.0025 41 1 3.4140 -2.9581 -2.8317 42 1 2.2462 -3.8554 -1.8148 43 1 1.2958 -3.8908 -5.9305 44 1 2.5051 -2.6835 -5.3433 45 1 -0.6351 -3.7934 -2.7416 46 1 -0.9199 -4.2493 -4.4487 47 1 1.8393 -6.1128 -2.0851 48 1 0.7947 -4.7900 -1.5129 49 1 0.1934 -7.0450 -0.1653 50 1 -2.7462 -10.0643 1.4507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318210402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:49 Heat of formation + Delta-G solvation = -0.800926 kcal Electronic energy + Delta-G solvation = -30915.514880 eV Core-core repulsion = 26944.859510 eV Total energy + Delta-G solvation = -3970.655370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.56633 -40.27409 -38.21345 -37.52769 -34.25460 -33.67512 -31.80438 -31.47446 -30.50361 -29.89450 -27.56883 -27.24231 -26.64699 -25.00184 -23.94512 -22.78467 -21.70688 -20.65045 -19.62740 -19.09055 -18.49978 -17.97346 -17.44150 -16.79046 -16.06554 -15.65115 -15.34027 -15.10282 -14.93050 -14.71015 -14.26945 -13.92249 -13.79710 -13.56441 -13.43422 -13.09873 -12.89017 -12.79179 -12.54190 -12.43093 -12.37218 -12.22244 -12.13605 -11.90656 -11.84680 -11.66530 -11.52824 -11.38859 -11.24159 -11.22461 -11.01370 -10.95106 -10.63653 -10.61094 -10.33470 -9.97632 -9.61001 -9.55991 -8.90638 -8.54268 -8.17463 -8.01174 -6.30547 -3.81867 2.53888 2.71871 3.00597 3.05239 3.13809 3.70317 3.74943 4.08096 4.09819 4.10398 4.23137 4.26209 4.40751 4.45682 4.61564 4.74500 4.80646 4.84927 5.00921 5.08512 5.15813 5.20232 5.26208 5.31030 5.37425 5.40721 5.48707 5.51109 5.55657 5.56665 5.63034 5.64978 5.67793 5.69643 5.74620 5.81363 5.86215 5.88391 5.92266 6.00240 6.03226 6.17914 6.25650 6.34378 6.85203 6.99176 7.41557 7.58621 8.07635 8.15027 8.61047 8.96289 9.43027 9.84709 10.82785 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.003917 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.154035 B = 7147.434211 C = 8789.832536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.125 4.125 7 H 0.113 0.887 8 C 0.542 3.458 9 O -0.536 6.536 10 N -0.620 5.620 11 C 0.062 3.938 12 C 0.051 3.949 13 H 0.136 0.864 14 C -0.132 4.132 15 C 0.107 3.893 16 H 0.125 0.875 17 C 0.042 3.958 18 N -0.486 5.486 19 C 0.033 3.967 20 C 0.454 3.546 21 O -0.555 6.555 22 N -0.594 5.594 23 C -0.303 4.303 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.882 5.882 27 Si 0.878 3.122 28 H -0.272 1.272 29 H -0.276 1.276 30 H -0.270 1.270 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.053 0.947 49 H 0.369 0.631 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 18.853 -2.064 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.192 4.192 4 C -0.171 4.171 5 C -0.168 4.168 6 C -0.146 4.146 7 H 0.131 0.869 8 C 0.331 3.669 9 O -0.412 6.412 10 N -0.355 5.355 11 C -0.062 4.062 12 C -0.057 4.057 13 H 0.153 0.847 14 C -0.171 4.171 15 C 0.003 3.997 16 H 0.143 0.857 17 C -0.087 4.087 18 N -0.210 5.210 19 C -0.099 4.099 20 C 0.239 3.761 21 O -0.436 6.436 22 N -0.234 5.234 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.522 5.522 27 Si 0.705 3.295 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.071 0.929 49 H 0.201 0.799 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.117 18.626 -2.979 24.173 hybrid contribution 1.170 0.575 1.967 2.359 sum 16.286 19.201 -1.013 25.198 Atomic orbital electron populations 1.21590 0.92179 1.02867 1.01154 1.21702 0.96414 0.94050 0.93812 1.21724 0.99891 0.95413 1.02152 1.23041 1.01316 0.95876 0.96899 1.22887 1.02900 0.96012 0.94964 1.22943 0.99803 0.99538 0.92331 0.86922 1.20176 0.84463 0.79474 0.82769 1.90688 1.35153 1.45120 1.70258 1.49332 1.35122 1.21062 1.29999 1.23339 0.92523 0.89446 1.00938 1.24788 0.94022 0.93310 0.93605 0.84687 1.23924 0.98134 0.97377 0.97628 1.24154 0.93676 0.96265 0.85557 0.85686 1.23633 0.94693 0.88077 1.02278 1.64617 1.02394 1.29295 1.24653 1.22166 0.99803 0.97765 0.90174 1.19619 0.87790 0.84986 0.83714 1.90567 1.46693 1.66275 1.40056 1.42201 1.28539 1.40464 1.12161 1.19420 1.05539 1.17218 1.01023 0.86306 1.25021 0.97004 0.96521 0.97592 1.69622 1.29582 1.26961 1.26085 0.86695 0.80870 0.78923 0.83034 1.19705 1.20161 1.19531 0.92993 0.91010 0.92872 0.92756 0.92221 0.92323 0.90800 0.89813 0.90645 0.89671 0.91136 0.90202 0.88377 0.90042 0.92151 0.88767 0.89267 0.92930 0.79893 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 7.49 37.16 0.28 -1.12 16 2 C -0.06 -0.57 1.21 -153.60 -0.19 -0.76 16 3 C -0.13 -1.13 9.15 37.16 0.34 -0.79 16 4 C -0.13 -1.11 7.22 -25.92 -0.19 -1.30 16 5 C -0.13 -1.17 5.55 -25.92 -0.14 -1.32 16 6 C -0.13 -1.21 3.21 -90.87 -0.29 -1.50 16 7 H 0.11 0.92 8.10 -51.93 -0.42 0.50 16 8 C 0.54 6.83 6.53 -10.99 -0.07 6.76 16 9 O -0.54 -8.44 14.50 5.56 0.08 -8.36 16 10 N -0.62 -7.11 2.95 -156.82 -0.46 -7.57 16 11 C 0.06 0.58 5.13 -1.68 -0.01 0.57 16 12 C 0.05 0.52 5.19 -62.31 -0.32 0.20 16 13 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.13 -1.25 6.80 -22.32 -0.15 -1.40 16 15 C 0.11 1.26 5.23 -62.58 -0.33 0.93 16 16 H 0.13 1.49 8.06 -51.93 -0.42 1.07 16 17 C 0.04 0.62 5.57 -1.45 -0.01 0.61 16 18 N -0.49 -7.15 4.81 -218.16 -1.05 -8.20 16 19 C 0.03 0.52 4.08 -4.97 -0.02 0.50 16 20 C 0.45 10.17 7.67 -10.99 -0.08 10.09 16 21 O -0.56 -14.85 15.57 5.55 0.09 -14.76 16 22 N -0.59 -14.01 5.09 -10.97 -0.06 -14.06 16 23 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 24 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 26 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 27 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 30 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.92 7.21 -51.93 -0.37 0.55 16 33 H 0.05 0.71 6.62 -51.93 -0.34 0.37 16 34 H 0.05 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 39 H 0.07 0.57 7.97 -51.92 -0.41 0.15 16 40 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.78 4.42 -51.93 -0.23 0.55 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.03 7.40 -51.93 -0.38 0.65 16 46 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.09 1.20 8.00 -51.93 -0.42 0.78 16 48 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -34.18 383.40 -9.14 -43.32 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.15 Total: 10.58 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.43 Total: 3.79 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.79 Total: -54.88 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.18 -9.14 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318210402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.516 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds