Wall clock time and date at job start Tue Mar 31 2020 18:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 112.90674 * 2 1 4 4 C 1.53776 * 113.61630 * 131.25355 * 2 1 3 5 5 C 1.53784 * 87.17253 * 89.15395 * 4 2 1 6 6 C 1.53780 * 87.07792 * 25.39300 * 5 4 2 7 7 H 1.09005 * 113.61748 * 89.11364 * 6 5 4 8 8 C 1.50703 * 113.61063 * 219.93173 * 6 5 4 9 9 O 1.21280 * 120.00024 * 121.68220 * 8 6 5 10 10 N 1.34771 * 120.00194 * 301.67298 * 8 6 5 11 11 C 1.47869 * 126.92406 * 359.68810 * 10 8 6 12 12 C 1.56009 * 105.11978 * 181.84082 * 11 10 8 13 13 H 1.09000 * 116.82735 * 159.42306 * 12 11 10 14 14 C 1.57082 * 99.47948 * 33.13626 * 12 11 10 15 15 C 1.49278 * 126.93013 * 180.02562 * 10 8 6 16 16 H 1.09004 * 116.12741 * 16.83376 * 15 10 8 17 17 C 1.56011 * 104.12794 * 246.86975 * 15 10 8 18 18 N 1.48283 * 105.07112 * 288.79499 * 17 15 10 19 19 C 1.46906 * 111.00298 * 122.54418 * 18 17 15 20 20 C 1.50697 * 109.46907 * 78.58768 * 19 18 17 21 21 O 1.21294 * 120.00247 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99671 * 180.02562 * 20 19 18 23 23 C 1.37104 * 120.00024 * 179.97438 * 22 20 19 24 24 H 1.07995 * 119.99737 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00089 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99832 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00060 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47037 * 90.00210 * 27 25 23 29 29 H 1.48499 * 109.47212 * 210.00187 * 27 25 23 30 30 H 1.48498 * 109.47175 * 330.00200 * 27 25 23 31 31 H 1.08996 * 109.46721 * 283.40178 * 1 2 3 32 32 H 1.08997 * 109.46853 * 43.40355 * 1 2 3 33 33 H 1.08995 * 109.46980 * 163.40055 * 1 2 3 34 34 H 1.08994 * 109.46982 * 171.75029 * 3 2 1 35 35 H 1.09005 * 109.47042 * 291.74995 * 3 2 1 36 36 H 1.09001 * 109.46659 * 51.74724 * 3 2 1 37 37 H 1.09006 * 113.61513 * 334.56945 * 4 2 1 38 38 H 1.08994 * 113.61549 * 203.75139 * 4 2 1 39 39 H 1.09010 * 113.61029 * 139.93687 * 5 4 2 40 40 H 1.08994 * 113.61641 * 270.75567 * 5 4 2 41 41 H 1.09000 * 110.31350 * 300.86038 * 11 10 8 42 42 H 1.08995 * 110.31831 * 63.05019 * 11 10 8 43 43 H 1.09005 * 112.35813 * 191.56688 * 14 12 11 44 44 H 1.08999 * 112.43953 * 64.16929 * 14 12 11 45 45 H 1.09000 * 110.32259 * 47.69550 * 17 15 10 46 46 H 1.09004 * 110.32354 * 169.89456 * 17 15 10 47 47 H 1.08998 * 109.46868 * 198.58573 * 19 18 17 48 48 H 1.08999 * 109.46224 * 318.58857 * 19 18 17 49 49 H 0.96999 * 120.00784 * 359.97438 * 22 20 19 50 50 H 0.97007 * 119.99780 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 6 2.0950 -2.0438 0.0011 6 6 2.1467 -0.9314 -1.0594 7 1 3.1595 -0.6510 -1.3490 8 6 1.2482 -1.1834 -2.2427 9 8 0.3841 -0.3821 -2.5295 10 7 1.4049 -2.2990 -2.9824 11 6 2.4055 -3.3681 -2.7766 12 6 2.1653 -4.3797 -3.9397 13 1 2.9886 -5.0500 -4.1865 14 6 1.7141 -3.3793 -5.0636 15 6 0.6078 -2.7012 -4.1788 16 1 0.0221 -1.9133 -4.6524 17 6 -0.1679 -3.9711 -3.7102 18 7 0.8616 -5.0324 -3.5985 19 6 0.8933 -5.5945 -2.2417 20 6 -0.2458 -6.5667 -2.0740 21 8 -1.0093 -6.7709 -2.9941 22 7 -0.4168 -7.2085 -0.9013 23 6 -1.4535 -8.0927 -0.7485 24 1 -2.1333 -8.2745 -1.5677 25 6 -1.6295 -8.7547 0.4603 26 7 -2.6235 -9.6018 0.6069 27 14 -0.4533 -8.4408 1.8771 28 1 -0.9623 -7.3167 2.7032 29 1 -0.3494 -9.6629 2.7143 30 1 0.8869 -8.0933 1.3401 31 1 -0.3632 0.2382 0.9997 32 1 -0.3633 0.7466 -0.7061 33 1 -0.3633 -0.9848 -0.2936 34 1 3.2038 1.3482 0.1474 35 1 1.9162 1.8923 -0.9546 36 1 1.6809 1.9916 0.8070 37 1 1.4946 -1.1087 1.9145 38 1 3.1586 -0.6490 1.3500 39 1 2.9748 -2.6875 0.0021 40 1 1.1603 -2.6046 0.0025 41 1 3.4140 -2.9581 -2.8317 42 1 2.2462 -3.8554 -1.8148 43 1 1.2958 -3.8908 -5.9305 44 1 2.5051 -2.6835 -5.3433 45 1 -0.6351 -3.7934 -2.7416 46 1 -0.9199 -4.2493 -4.4487 47 1 1.8393 -6.1128 -2.0851 48 1 0.7947 -4.7900 -1.5129 49 1 0.1934 -7.0450 -0.1653 50 1 -2.7462 -10.0643 1.4507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318210402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:48 Heat of formation + Delta-G solvation = -26.267812 kcal Electronic energy + Delta-G solvation = -30916.619207 eV Core-core repulsion = 26944.859510 eV Total energy + Delta-G solvation = -3971.759697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.48591 -41.15256 -39.95212 -38.52432 -36.05599 -34.99732 -33.75883 -32.57611 -31.30852 -30.82757 -28.45146 -28.37594 -27.71073 -26.13474 -25.48632 -23.47190 -22.67663 -21.57364 -21.32610 -20.51736 -19.80937 -19.01913 -18.33302 -18.01706 -17.33235 -16.89344 -16.55356 -16.41956 -16.11802 -15.84575 -15.37214 -15.15059 -14.91439 -14.76788 -14.50182 -14.21772 -14.17792 -13.94842 -13.86309 -13.67029 -13.48101 -13.24071 -13.11183 -12.99695 -12.91134 -12.57672 -12.48706 -12.41733 -12.35221 -12.24170 -12.13878 -12.06556 -11.97141 -11.76463 -11.50822 -11.33811 -11.02622 -10.54747 -10.44221 -10.24428 -9.77024 -9.15870 -8.41355 -6.02340 1.28269 1.34927 1.43800 1.62044 1.86346 1.97040 2.22790 2.53094 3.12770 3.15286 3.30249 3.36543 3.48840 3.53879 3.63709 3.69017 3.80019 3.94783 4.01834 4.11745 4.17524 4.27188 4.30740 4.41845 4.48681 4.51360 4.58644 4.63227 4.70088 4.74545 4.79243 4.85316 4.89956 4.91892 4.95282 4.95963 4.98512 5.05446 5.09639 5.17678 5.24286 5.27271 5.47714 5.52099 5.52403 5.75651 5.87319 5.99281 6.54215 6.60082 6.88964 7.15801 7.40248 7.98824 8.76652 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.003917 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.154035 B = 7147.434211 C = 8789.832536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.128 4.128 6 C -0.119 4.119 7 H 0.141 0.859 8 C 0.533 3.467 9 O -0.580 6.580 10 N -0.619 5.619 11 C 0.062 3.938 12 C 0.058 3.942 13 H 0.169 0.831 14 C -0.117 4.117 15 C 0.105 3.895 16 H 0.115 0.885 17 C 0.046 3.954 18 N -0.511 5.511 19 C 0.050 3.950 20 C 0.449 3.551 21 O -0.609 6.609 22 N -0.593 5.593 23 C -0.328 4.328 24 H 0.052 0.948 25 C -0.016 4.016 26 N -0.937 5.937 27 Si 0.964 3.036 28 H -0.260 1.260 29 H -0.274 1.274 30 H -0.225 1.225 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.028 0.972 46 H 0.065 0.935 47 H 0.131 0.869 48 H 0.071 0.929 49 H 0.389 0.611 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.187 20.196 -0.229 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.187 4.187 4 C -0.160 4.160 5 C -0.165 4.165 6 C -0.140 4.140 7 H 0.158 0.842 8 C 0.324 3.676 9 O -0.460 6.460 10 N -0.354 5.354 11 C -0.061 4.061 12 C -0.049 4.049 13 H 0.186 0.814 14 C -0.155 4.155 15 C 0.001 3.999 16 H 0.133 0.867 17 C -0.083 4.083 18 N -0.235 5.235 19 C -0.082 4.082 20 C 0.237 3.763 21 O -0.492 6.492 22 N -0.235 5.235 23 C -0.457 4.457 24 H 0.070 0.930 25 C -0.214 4.214 26 N -0.577 5.577 27 Si 0.783 3.217 28 H -0.185 1.185 29 H -0.199 1.199 30 H -0.148 1.148 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.046 0.954 46 H 0.084 0.916 47 H 0.149 0.851 48 H 0.089 0.911 49 H 0.224 0.776 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.970 19.971 -1.160 28.981 hybrid contribution -0.823 0.146 1.240 1.495 sum 20.147 20.116 0.080 28.471 Atomic orbital electron populations 1.21498 0.94521 1.00492 1.00789 1.21757 0.94696 0.95433 0.95088 1.21694 1.01230 0.94360 1.01457 1.23037 1.02380 0.94578 0.96022 1.22868 1.02808 0.96194 0.94659 1.23052 1.00168 0.99933 0.90829 0.84172 1.20844 0.84348 0.79162 0.83269 1.90673 1.37104 1.46784 1.71440 1.49411 1.35219 1.21301 1.29443 1.23506 0.93588 0.88612 1.00401 1.25073 0.92295 0.93584 0.93911 0.81392 1.23887 0.97489 0.97245 0.96903 1.24038 0.94395 0.94745 0.86735 0.86680 1.23426 0.94978 0.90177 0.99758 1.64489 1.04830 1.30085 1.24076 1.22032 0.97960 0.96670 0.91510 1.21019 0.88472 0.84517 0.82298 1.90545 1.49026 1.67803 1.41829 1.42017 1.27945 1.40094 1.13474 1.18983 1.06835 1.19807 1.00104 0.92999 1.26129 0.99159 0.95254 1.00889 1.69814 1.32146 1.28283 1.27500 0.85388 0.79588 0.79104 0.77608 1.18491 1.19893 1.14821 0.92157 0.93213 0.95493 0.90445 0.93773 0.92038 0.91283 0.87193 0.87878 0.92203 0.87276 0.89981 0.88697 0.87357 0.95390 0.91617 0.85134 0.91086 0.77586 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 7.49 71.98 0.54 -2.20 16 2 C -0.07 -1.20 1.21 -51.59 -0.06 -1.26 16 3 C -0.13 -1.87 9.15 71.98 0.66 -1.21 16 4 C -0.12 -1.58 7.22 31.12 0.22 -1.35 16 5 C -0.13 -1.82 5.55 31.12 0.17 -1.64 16 6 C -0.12 -1.93 3.21 -10.95 -0.04 -1.97 16 7 H 0.14 1.54 8.10 -2.38 -0.02 1.52 16 8 C 0.53 12.81 6.53 87.66 0.57 13.38 16 9 O -0.58 -18.83 14.50 -3.03 -0.04 -18.87 16 10 N -0.62 -12.97 2.95 -768.46 -2.26 -15.23 16 11 C 0.06 0.87 5.13 87.16 0.45 1.31 16 12 C 0.06 0.94 5.19 46.84 0.24 1.18 16 13 H 0.17 1.70 8.14 -2.39 -0.02 1.68 16 14 C -0.12 -1.89 6.80 33.45 0.23 -1.66 16 15 C 0.10 2.45 5.23 46.92 0.25 2.69 16 16 H 0.12 2.89 8.06 -2.39 -0.02 2.87 16 17 C 0.05 1.42 5.57 87.08 0.49 1.91 16 18 N -0.51 -14.32 4.81 -844.13 -4.06 -18.38 16 19 C 0.05 1.46 4.08 85.56 0.35 1.81 16 20 C 0.45 20.42 7.67 87.66 0.67 21.10 16 21 O -0.61 -34.45 15.57 -3.07 -0.05 -34.50 16 22 N -0.59 -28.04 5.09 -306.99 -1.56 -29.60 16 23 C -0.33 -19.45 10.16 84.04 0.85 -18.59 16 24 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 25 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 26 N -0.94 -57.07 13.96 21.66 0.30 -56.77 16 27 Si 0.96 38.52 27.74 68.60 1.90 40.43 16 28 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 29 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 30 H -0.23 -7.34 6.52 99.48 0.65 -6.70 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.37 7.21 -2.39 -0.02 1.35 16 33 H 0.03 0.75 6.62 -2.39 -0.02 0.73 16 34 H 0.08 0.76 8.01 -2.39 -0.02 0.74 16 35 H 0.04 0.76 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 38 H 0.11 0.89 8.00 -2.39 -0.02 0.87 16 39 H 0.10 0.92 7.97 -2.38 -0.02 0.90 16 40 H 0.06 1.18 7.69 -2.39 -0.02 1.16 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.16 4.42 -2.39 -0.01 1.15 16 43 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 1.02 7.40 -2.39 -0.02 1.00 16 46 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.13 2.83 8.00 -2.39 -0.02 2.81 16 48 H 0.07 1.88 6.20 -2.39 -0.01 1.87 16 49 H 0.39 15.01 5.76 -92.71 -0.53 14.48 16 50 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -85.38 383.40 0.64 -84.74 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.35 Total: 35.14 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.06 Total: 13.06 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -7.58 Total: -119.99 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.09 Total: -53.37 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.43 kcal Total: -85.38 0.64 -84.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318210402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.468 kcal (2) G-P(sol) polarization free energy of solvation -85.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds